Rmu_sc0000093.1_g000015

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000093.1
Physical Location & Seq
Reverse (-)
33568 .. 35166
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000093.1_g000015.1.cds

Sequence Viewer

Length: 1599 bp
atggttgaaaaaccccatggcgtgacgattggcatgagggtcagagtgggagcggctcaaacgcattcctttacaacgggagcatactgtgggaagtcaagggatgatgatgatgccataaaaatgattgtggatctgcgctcatcctgcagcagcgggtgtgtggagctgaagaagaagctggagcagtgcggcgtagcagcctcagcctcagcctcagcctcaccggagctggtggtggagattctttcgcgttttcgcaacgattgggaatcggccttcaccttcttcctctgggcaggaaagcagcgaccccattccgtgcgtgaataccactcgatgatctccattctggggaagatgaggaaattcgacactgcctgggccctgatcgatgaaatgcggggcggttcgggttcgggttcggcttcttccctcgtcactcctcagactctgttactcatgatccgaaaatactcttgcgctcatgatgttgggagggccattcacactttctacgcctataagcggtttgcgtttgaggccggcatggatgacttccacggccttctctccgccctctgccgctacaaaaatgtccctgaagctgagcacttgcttttctgcaactcacatgtcttcccatttaacaccaagagcttcaacattattctcaacggctggtctaatatcatcgttagtccccgccacgccgaccgaatttggactgaaatgaccaaccggggcgtcccccacgatgccatttcctattcatgtctcatttcttgccattccaaatcctccaatctcaccaaggtgctcaacatcttccgccgcatgaacaaaatgaatgttgagcctgacactaaggtttacaatgccctcattttcgctcttggaaaagccggtctcttcaaagaagctaccaatctcatgaaaaccatgcaagaaaagggtcttgcgcccaacattgtcacttataactccctcatcaagactctctgcaaggccagggaaattgatcaagctacacacattctccatgacatgttgcgccatggccttgttccaacaattcggacttaccatgccttcttccgtgttttatcaaccggggaccaagtgtttgagctcttggaaaagatgaaaaacaccggttgcccaccaaatactgatacatacataatgttgattaggaaattctgtcgatggtgccagcttgataatgtcttcaagatttggagtcagatgagcgagaatggagtcggtcctgatcgtagctcatatattgtgctcatacatgggctctttctaaatgccaagctggaggaagcccacaaatattatgtggagatgaaagatagacactatttgccagaaccaaggacagaagagatgcttcaggcatggttgtctggtaagcagacttccaaattccaaacaacagatggagaagttgatcaagtggattgtactcagccagctacgaatactaaactagtaatccccaagaaatctcctcaggaaaaagatttccgtcggcaacctgaaagtaggaaagttgtaagagagcggggtttttcgttttgggagcagtag

Protein Analysis

532

Amino Acids

60.55

Weight (kDa)

9.12

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 981
AccB1I GGYRCC 1 cut(s) 1212
AccBSI CCGCTC 2 cut(s) 53, 1573
AccII CGCG 1 cut(s) 253
AclWI GGATC 2 cut(s) 141, 460
AcsI RAATTY 4 cut(s) 368, 720, 1199, 1433
AcuI CTGAAG 3 cut(s) 191, 624, 1385
AcyI GRCGYC 1 cut(s) 747
AfaI GTAC 1 cut(s) 1474
AfiI CCNNNNNNNGG 2 cut(s) 354, 528
AflIII ACRYGT 2 cut(s) 634, 1047
AgeI ACCGGT 1 cut(s) 1154
AgsI TTSAA 4 cut(s) 8, 664, 916, 1234
AhlI ACTAGT 1 cut(s) 1498
AjnI CCWGG 2 cut(s) 380, 1010
AleI CACNNNNGTG 1 cut(s) 815
Alw21I GWGCWC 4 cut(s) 615, 822, 1134, 1296
Alw26I GTCTC 2 cut(s) 782, 914
AlwI GGATC 2 cut(s) 141, 460
AlwNI CAGNNNCTG 1 cut(s) 454
AoxI GGCC 7 cut(s) 276, 384, 501, 543, 565, 1008, 1060
ApaI GGGCCC 1 cut(s) 388
ApeKI GCWGC 4 cut(s) 150, 153, 200, 307
ApoI RAATTY 4 cut(s) 368, 720, 1199, 1433
ArsI GACNNNNNNTTYG 2 cut(s) 1109, 1141
AsiGI ACCGGT 1 cut(s) 1154
AspLEI GCGC 4 cut(s) 141, 485, 964, 1056
AspS9I GGNCC 5 cut(s) 384, 385, 501, 1117, 1268
AsuC2I CCSGG 2 cut(s) 743, 1114
AsuHPI GGTGA 3 cut(s) 216, 274, 802
AvaII GGWCC 2 cut(s) 1117, 1268
AxyI CCTNAGG 1 cut(s) 1521
BaeGI GKGCMC 1 cut(s) 388
BanI GGYRCC 1 cut(s) 1212
BanII GRGCYC 3 cut(s) 388, 1134, 1308
BarI GAAGNNNNNNTAC 2 cut(s) 1411, 1443
BbsI GAAGAC 2 cut(s) 631, 1222
Bbv12I GWGCWC 4 cut(s) 615, 822, 1134, 1296
BbvCI CCTCAGC 3 cut(s) 205, 211, 217
BbvI GCAGC 4 cut(s) 162, 165, 212, 319
BccI CCATC 2 cut(s) 1203, 1442
BceAI ACGGC 2 cut(s) 580, 694
BciT130I CCWGG 2 cut(s) 382, 1012
BclI TGATCA 2 cut(s) 1021, 1459
BcnI CCSGG 2 cut(s) 743, 1114
BcoDI GTCTC 2 cut(s) 782, 914
BcuI ACTAGT 1 cut(s) 1498
BfaI CTAG 1 cut(s) 1499
BfmI CTRYAG 1 cut(s) 148
BisI GCNGC 8 cut(s) 54, 151, 154, 193, 201, 308, 586, 835
BlpI GCTNAGC 1 cut(s) 609
BlsI GCNGC 8 cut(s) 55, 152, 155, 194, 202, 309, 587, 836
Bme1390I CCNGG 4 cut(s) 382, 743, 1012, 1114
Bme18I GGWCC 2 cut(s) 1117, 1268
BmgT120I GGNCC 5 cut(s) 384, 385, 501, 1117, 1268
BmiI GGNNCC 3 cut(s) 386, 1118, 1214
BmrFI CCNGG 4 cut(s) 382, 743, 1012, 1114
BmsI GCATC 3 cut(s) 103, 748, 1386
BpiI GAAGAC 2 cut(s) 631, 1222
BpmI CTGGAG 2 cut(s) 203, 1346
Bpu10I CCTNAGC 3 cut(s) 205, 211, 217
Bpu1102I GCTNAGC 1 cut(s) 609
BpuMI CCSGG 2 cut(s) 743, 1114
Bsa29I ATCGAT 1 cut(s) 393
BsaHI GRCGYC 1 cut(s) 747
BsaI GGTCTC 1 cut(s) 914
BsaJI CCNNGG 9 cut(s) 16, 381, 562, 742, 813, 1011, 1057, 1113, 1382
BsaWI WCCGGW 2 cut(s) 226, 1154
BsaXI ACNNNNNCTCC 2 cut(s) 1023, 1053
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 528
Bse118I RCCGGY 3 cut(s) 545, 905, 1154
Bse21I CCTNAGG 1 cut(s) 1521
BseBI CCWGG 2 cut(s) 382, 1012
BseCI ATCGAT 1 cut(s) 393
BseDI CCNNGG 9 cut(s) 16, 381, 562, 742, 813, 1011, 1057, 1113, 1382
BseGI GGATG 3 cut(s) 109, 143, 559
BseLI CCNNNNNNNGG 2 cut(s) 354, 528
BseMII CTCAG 7 cut(s) 219, 225, 231, 461, 600, 1490, 1535
BseRI GAGGAG 2 cut(s) 435, 1509
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 4 cut(s) 162, 165, 212, 319
Bsh1236I CGCG 1 cut(s) 253
Bsh1285I CGRYCG 1 cut(s) 718
BshFI GGCC 7 cut(s) 278, 386, 503, 545, 567, 1010, 1062
BshNI GGYRCC 1 cut(s) 1212
BshTI ACCGGT 1 cut(s) 1154
BshVI ATCGAT 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 718
BsiHKAI GWGCWC 4 cut(s) 615, 822, 1134, 1296
BsiSI CCGG 6 cut(s) 227, 546, 742, 906, 1113, 1155
BslFI GGGAC 4 cut(s) 584, 687, 734, 1130
BslI CCNNNNNNNGG 2 cut(s) 354, 528
BsmAI GTCTC 2 cut(s) 782, 914
BsmFI GGGAC 4 cut(s) 584, 687, 734, 1130
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 7 cut(s) 278, 386, 503, 545, 567, 1010, 1062
Bso31I GGTCTC 1 cut(s) 914
Bsp120I GGGCCC 1 cut(s) 384
Bsp1286I GDGCHC 6 cut(s) 388, 615, 822, 1134, 1296, 1308
Bsp143I GATC 7 cut(s) 133, 342, 390, 465, 1021, 1273, 1459
Bsp1720I GCTNAGC 1 cut(s) 609
Bsp19I CCATGG 2 cut(s) 16, 1057
BspANI GGCC 7 cut(s) 278, 386, 503, 545, 567, 1010, 1062
BspCNI CTCAG 7 cut(s) 218, 224, 230, 460, 601, 1489, 1534
BspDI ATCGAT 1 cut(s) 393
BspFNI CGCG 1 cut(s) 253
BspHI TCATGA 3 cut(s) 462, 487, 933
BspLI GGNNCC 3 cut(s) 386, 1118, 1214
BspMAI CTGCAG 1 cut(s) 152
BspPI GGATC 2 cut(s) 141, 460
BspT107I GGYRCC 1 cut(s) 1212
BspTNI GGTCTC 1 cut(s) 914
BsrBI CCGCTC 2 cut(s) 53, 1573
BsrFI RCCGGY 3 cut(s) 545, 905, 1154
BssAI RCCGGY 3 cut(s) 545, 905, 1154
BssECI CCNNGG 9 cut(s) 16, 381, 562, 742, 813, 1011, 1057, 1113, 1382
BssMI GATC 7 cut(s) 133, 342, 390, 465, 1021, 1273, 1459
BssNI GRCGYC 1 cut(s) 747
BssT1I CCWWGG 4 cut(s) 16, 813, 1057, 1382
Bst2UI CCWGG 2 cut(s) 382, 1012
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 917, 1386
BstACI GRCGYC 1 cut(s) 747
BstC8I GCNNGC 3 cut(s) 547, 1217, 1482
BstDEI CTNAG 8 cut(s) 205, 211, 217, 447, 609, 867, 1476, 1521
BstDSI CCRYGG 3 cut(s) 16, 562, 1057
BstF5I GGATG 3 cut(s) 109, 143, 559
BstFNI CGCG 1 cut(s) 253
BstHHI GCGC 4 cut(s) 141, 485, 964, 1056
BstKTI GATC 7 cut(s) 136, 345, 393, 468, 1024, 1276, 1462
BstMAI GTCTC 2 cut(s) 782, 914
BstMBI GATC 7 cut(s) 133, 342, 390, 465, 1021, 1273, 1459
BstMCI CGRYCG 1 cut(s) 718
BstMWI GCNNNNNNNGC 3 cut(s) 147, 206, 542
BstNI CCWGG 2 cut(s) 382, 1012
BstNSI RCATGY 2 cut(s) 638, 1051
BstSCI CCNGG 4 cut(s) 380, 741, 1010, 1112
BstSFI CTRYAG 1 cut(s) 148
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 4 cut(s) 162, 165, 212, 319
BstV2I GAAGAC 2 cut(s) 631, 1222
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Bsu15I ATCGAT 1 cut(s) 393
Bsu36I CCTNAGG 1 cut(s) 1521
BsuRI GGCC 7 cut(s) 278, 386, 503, 545, 567, 1010, 1062
BsuTUI ATCGAT 1 cut(s) 393
BtgI CCRYGG 3 cut(s) 16, 562, 1057
BtsCI GGATG 3 cut(s) 109, 143, 559
BtsI GCAGTG 2 cut(s) 194, 375
BtsIMutI CAGTG 2 cut(s) 194, 375
Cac8I GCNNGC 3 cut(s) 547, 1217, 1482
CaiI CAGNNNCTG 1 cut(s) 454
CciI TCATGA 3 cut(s) 462, 487, 933
CfoI GCGC 4 cut(s) 141, 485, 964, 1056
Cfr10I RCCGGY 3 cut(s) 545, 905, 1154
Cfr13I GGNCC 5 cut(s) 384, 385, 501, 1117, 1268
ClaI ATCGAT 1 cut(s) 393
CseI GACGC 1 cut(s) 736
Csp6I GTAC 1 cut(s) 1473
CspAI ACCGGT 1 cut(s) 1154
CviQI GTAC 1 cut(s) 1473
DdeI CTNAG 8 cut(s) 205, 211, 217, 447, 609, 867, 1476, 1521
DpnI GATC 7 cut(s) 135, 344, 392, 467, 1023, 1275, 1461
DpnII GATC 7 cut(s) 133, 342, 390, 465, 1021, 1273, 1459
Eam1104I CTCTTC 2 cut(s) 917, 1386
EarI CTCTTC 2 cut(s) 917, 1386
EciI GGCGGA 2 cut(s) 565, 821
Ecl136II GAGCTC 1 cut(s) 1132
Eco130I CCWWGG 4 cut(s) 16, 813, 1057, 1382
Eco24I GRGCYC 3 cut(s) 388, 1134, 1308
Eco31I GGTCTC 1 cut(s) 914
Eco47I GGWCC 2 cut(s) 1117, 1268
Eco53kI GAGCTC 1 cut(s) 1132
Eco57I CTGAAG 3 cut(s) 191, 624, 1385
Eco81I CCTNAGG 1 cut(s) 1521
EcoICRI GAGCTC 1 cut(s) 1132
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 2 cut(s) 380, 1010
EcoT14I CCWWGG 4 cut(s) 16, 813, 1057, 1382
EcoT38I GRGCYC 3 cut(s) 388, 1134, 1308
ErhI CCWWGG 4 cut(s) 16, 813, 1057, 1382
FalI AAGNNNNNCTT 2 cut(s) 1383, 1415
FaqI GGGAC 4 cut(s) 584, 687, 734, 1130
FauI CCCGC 4 cut(s) 149, 396, 713, 1566
FbaI TGATCA 2 cut(s) 1021, 1459
Fnu4HI GCNGC 8 cut(s) 54, 151, 154, 193, 201, 308, 586, 835
FokI GGATG 3 cut(s) 116, 130, 566
FriOI GRGCYC 3 cut(s) 388, 1134, 1308
Fsp4HI GCNGC 8 cut(s) 54, 151, 154, 193, 201, 308, 586, 835
FspBI CTAG 1 cut(s) 1499
GlaI GCGC 4 cut(s) 140, 484, 963, 1055
GluI GCNGC 8 cut(s) 54, 151, 154, 193, 201, 308, 586, 835
GsuI CTGGAG 2 cut(s) 203, 1346
HaeIII GGCC 7 cut(s) 278, 386, 503, 545, 567, 1010, 1062
HapII CCGG 6 cut(s) 227, 546, 742, 906, 1113, 1155
HgaI GACGC 1 cut(s) 736
HhaI GCGC 4 cut(s) 141, 485, 964, 1056
Hin1I GRCGYC 1 cut(s) 747
Hin6I GCGC 4 cut(s) 139, 483, 962, 1054
HinP1I GCGC 4 cut(s) 139, 483, 962, 1054
HinfI GANTC 6 cut(s) 244, 272, 451, 997, 1243, 1263
HpaII CCGG 6 cut(s) 227, 546, 742, 906, 1113, 1155
HphI GGTGA 3 cut(s) 216, 274, 802
Hpy166II GTNNAC 1 cut(s) 874
Hpy188I TCNGA 5 cut(s) 44, 450, 470, 1080, 1248
Hpy188III TCNNGA 7 cut(s) 463, 488, 934, 994, 1234, 1271, 1523
Hpy8I GTNNAC 1 cut(s) 874
Hpy99I CGWCG 1 cut(s) 1542
HpyAV CCTTC 4 cut(s) 289, 295, 578, 1102
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 4 cut(s) 150, 627, 946, 1005
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 206, 542
HpyF3I CTNAG 8 cut(s) 205, 211, 217, 447, 609, 867, 1476, 1521
Hsp92I GRCGYC 1 cut(s) 747
HspAI GCGC 4 cut(s) 139, 483, 962, 1054
KroI GCCGGC 1 cut(s) 545
KroNI GCCGGC 1 cut(s) 547
Ksp22I TGATCA 2 cut(s) 1021, 1459
Kzo9I GATC 7 cut(s) 133, 342, 390, 465, 1021, 1273, 1459
LmnI GCTCC 6 cut(s) 50, 80, 166, 184, 229, 1591
Lsp1109I GCAGC 4 cut(s) 162, 165, 212, 319
LweI GCATC 3 cut(s) 103, 748, 1386
MaeI CTAG 1 cut(s) 1499
MaeIII GTNAC 4 cut(s) 22, 439, 456, 973
MalI GATC 7 cut(s) 135, 344, 392, 467, 1023, 1275, 1461
MbiI CCGCTC 2 cut(s) 53, 1573
MboI GATC 7 cut(s) 133, 342, 390, 465, 1021, 1273, 1459
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 6 cut(s) 388, 615, 822, 1134, 1296, 1308
MluCI AATT 6 cut(s) 368, 720, 1017, 1074, 1199, 1433
MlyI GAGTC 4 cut(s) 445, 991, 1252, 1272
MmeI TCCRAC 1 cut(s) 1094
MroNI GCCGGC 1 cut(s) 545
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 2 cut(s) 122, 815
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 6 cut(s) 227, 546, 742, 906, 1113, 1155
MspR9I CCNGG 4 cut(s) 382, 743, 1012, 1114
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 2 cut(s) 382, 1012
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 3 cut(s) 147, 206, 542
NaeI GCCGGC 1 cut(s) 547
NciI CCSGG 2 cut(s) 743, 1114
NcoI CCATGG 2 cut(s) 16, 1057
NdeII GATC 7 cut(s) 133, 342, 390, 465, 1021, 1273, 1459
NgoMIV GCCGGC 1 cut(s) 545
NlaIV GGNNCC 3 cut(s) 386, 1118, 1214
NmuCI GTSAC 3 cut(s) 22, 439, 973
NspI RCATGY 2 cut(s) 638, 1051
OliI CACNNNNGTG 1 cut(s) 815
PagI TCATGA 3 cut(s) 462, 487, 933
PciI ACATGT 2 cut(s) 634, 1047
PctI GAATGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 547
PfeI GAWTC 2 cut(s) 244, 272
PinAI ACCGGT 1 cut(s) 1154
PkrI GCNGC 8 cut(s) 55, 152, 155, 194, 202, 309, 587, 836
PleI GAGTC 4 cut(s) 445, 991, 1251, 1271
PpsI GAGTC 4 cut(s) 445, 991, 1251, 1271
PscI ACATGT 2 cut(s) 634, 1047
PsiI TTATAA 1 cut(s) 981
Psp124BI GAGCTC 1 cut(s) 1134
Psp6I CCWGG 2 cut(s) 380, 1010
PspGI CCWGG 2 cut(s) 380, 1010
PspN4I GGNNCC 3 cut(s) 386, 1118, 1214
PspOMI GGGCCC 1 cut(s) 384
PspPI GGNCC 5 cut(s) 384, 385, 501, 1117, 1268
PstI CTGCAG 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 454
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 1474
RsaNI GTAC 1 cut(s) 1473
RseI CAYNNNNRTG 2 cut(s) 122, 815
SacI GAGCTC 1 cut(s) 1134
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 8 cut(s) 54, 151, 154, 193, 201, 308, 586, 835
Sau3AI GATC 7 cut(s) 133, 342, 390, 465, 1021, 1273, 1459
Sau96I GGNCC 5 cut(s) 384, 385, 501, 1117, 1268
SchI GAGTC 4 cut(s) 445, 991, 1252, 1272
ScrFI CCNGG 4 cut(s) 382, 743, 1012, 1114
SduI GDGCHC 6 cut(s) 388, 615, 822, 1134, 1296, 1308
SfaNI GCATC 3 cut(s) 103, 748, 1386
SfcI CTRYAG 1 cut(s) 148
SinI GGWCC 2 cut(s) 1117, 1268
SmiMI CAYNNNNRTG 2 cut(s) 122, 815
SpeI ACTAGT 1 cut(s) 1498
Sse9I AATT 6 cut(s) 368, 720, 1017, 1074, 1199, 1433
SspI AATATT 1 cut(s) 1343
SspMI CTAG 1 cut(s) 1499
SstI GAGCTC 1 cut(s) 1134
StyD4I CCNGG 4 cut(s) 380, 741, 1010, 1112
StyI CCWWGG 4 cut(s) 16, 813, 1057, 1382
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 4 cut(s) 338, 372, 393, 1207
TaqII GACCGA 2 cut(s) 732, 1256
TasI AATT 6 cut(s) 368, 720, 1017, 1074, 1199, 1433
TatI WGTACW 1 cut(s) 1472
TauI GCSGC 4 cut(s) 56, 195, 588, 837
TfiI GAWTC 2 cut(s) 244, 272
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 2 cut(s) 194, 382
TseFI GTSAC 3 cut(s) 22, 439, 973
TseI GCWGC 4 cut(s) 150, 153, 200, 307
Tsp45I GTSAC 3 cut(s) 22, 439, 973
TspDTI ATGAA 7 cut(s) 411, 762, 854, 863, 950, 1160, 1370
TspGWI ACGGA 3 cut(s) 310, 1088, 1526
TspRI CASTG 2 cut(s) 194, 382
VpaK11BI GGWCC 2 cut(s) 1117, 1268
XapI RAATTY 4 cut(s) 368, 720, 1199, 1433
XceI RCATGY 2 cut(s) 638, 1051
XcmI CCANNNNNNNNNTGG 1 cut(s) 1445
XspI CTAG 1 cut(s) 1499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.