Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009369

Physical Location & Seq

Genomic Coordinates Forward (+)

546591 .. 549854

Gene Structure 3264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022455

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGAGAAACATAAGCAGATTGAAGTGGTTGTGCACGATTATGGATGGCGTAGCGATTGGCGTGAGGGTCAGAGTCGGAGCGGCTCAAACGCATTCCTTTACAACTGGAGCATACTCTGTGAAGTCAAAGGGTGATGATGCCATAAAAATGATTGTGGATCTGCGCTCATCCAGCAGCGGGTGTGTGGAGTTGAAGAAGAAGCTGGAGCAGTGCGGCGTAGCAGCCTCAGCCTCACCGGAGCTGGTGGTGGAGATTCTTTCGCGTTTTCGCAACGATTGGGAATCGGCCTTCACCTTCTTCCTCTGGGCAGGAAAGCGGCGACCTCATTCGGTGCGTGAATACCACTCGATGATCTCCATTCTGGGGAAGATGAGGAAATTCGACACTGCCTGGGCCCTGATCGATGAAATGCGGAGCGGTTCGGGTTCTTCCCTTGTCACTCCTCAAACTCTGTTACTCATGATTCGAAAATACTCTTGTGCTCATGATGTTGGGAGGGCCATTCACACTTTCTACGCCTATAAGCGGTTTGCGTTTGAGGCCGGCATGGATGACTTCCACGGCCTTCTCTCCGCCCTCTGCCGCTACAAAAATGTCCCTGAAGCTGAGCACTTGCTTTTCTGCAACTCACATGTCTTCCCATTTAACACCAAGAGCTTCAACATTATTCTCAACGGCTGGTCTAACATCATCGTTAGTCCCCGCCACGCTGACCGAATTTGGACTGAGATGACCAACCGGGGCGTCCCCCACGATGCCATTTCCTATTCATGTCTCATTTCTTGCCATTCCAAATCCTCCAATCTCACCAAGGTGCTCAACATCTTCCGCCGCATGAACAAAATGAATGTTGAGCCTGACACTAAGGTTTACAATGCCCTCATTTTTGCTCTTGGAAAAGCCGGTCTCTTCAAAGAAGCTACCAATCTCATGAAAACCATGCAAGAAAAGGGTCTTGCGCCCAACATTGTCACTTATAACTCCCTCATCAAGACTCTCTGCAAGGCCAGGGAAATTGATCAAGCTACACACATCCTCCATGACATGTTGCACCATGGCCTTGTTCCAACAATTCGGACTTACCATGCCTTCTTCCGTATTTTATCAACCGGGGACCAAGTGTTTGAGCTCTTGGAAAAGATGAAAAACACCGGTTGCCCTCCAAATACTGATACATACATAATGTTGATTCGGAAATTCTGTCGATGGCGCCAGCTTGATAATGTTTTCGAGATTTGGAGTCAGATGAGCGAGAATGGAGTCGGTCCTGATCGTAGCTCATATATTGTGCTCATACATGGGCTCTTTCTAAATGCCAAGTTGGAGGAAGCCCACAAATATTATATGGAGATGAAAGATAGACACTATTTGCCAGAACCAAGGACAGAAGAGATGCTTCAGGCATGGTTGTCTGGTAAGCAGACTTCCAAATTCCAAACAACAGATGGAGAAGCTGATCAAGTAGACTGTCCTCAGCCAGCTACGAATACTAAATTAGTAATCTCCAAGAAATCTCCTCTGGAAAAAGATTTCCGTCGGCAACCTGAAAGTAGGAAAGTTCTGGTCAGCAACCTTGAGCATCAGATTTCCATGAGCTTAAAAAGATCACGACTTTGCAAGTGTGCCCAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

545

Amino Acids

62.1

Weight (kDa)

9.36

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	239 - 300	4.4e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	240 - 367	5e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	252 - 297	1.8e-07	PPR repeat family
PPR_2	PF13041	286 - 335	2e-14	PPR repeat family
PPR_3	PF13812	310 - 364	1.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	317 - 349	1.3e-09	PPR repeat
PPR_2	PF13041	321 - 366	4.2e-11	PPR repeat family
PPR_2	PF13041	372 - 402	1e-06	PPR repeat family
PPR_2	PF13041	396 - 435	5.9e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15010
fragaria_vesca	FvH4_1g14610 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380
malus_domestica	MD12G1000700.v1.1
prunus_persica	Prupe.7G001100_v2.0.a1 Prupe.7G001100_v2.0.a1 Prupe.7G001100_v2.0.a1
pyrus_communis	pycom12g00060
rosa_chinensis	RchiOBHm_Chr3g0497531
rosa_laevigata	RLG00000022455
rosa_multiflora	Rmu_sc0000093.1_g000015
rosa_roxburghii	Rroxscaffold_6G00387950
rosa_rugosa	Rorug03G0293400
rosa_samantha	Rh3AG337300 Rh3BG375700 Rh3CG371700 Rh3DG372200
rosa_wichuraiana	Rw0G018510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	978
AccB1I	GGYRCC	1 cut(s)	1209
AccBSI	CCGCTC	2 cut(s)	80, 417
AccI	GTMKAC	1 cut(s)	1464
AccII	CGCG	1 cut(s)	262
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	4 cut(s)	377, 717, 1196, 1430
AcuI	CTGAAG	2 cut(s)	621, 1382
AcyI	GRCGYC	2 cut(s)	744, 1210
AfiI	CCNNNNNNNGG	3 cut(s)	177, 363, 525
AflIII	ACRYGT	2 cut(s)	631, 1044
AgeI	ACCGGT	1 cut(s)	1151
AgsI	TTSAA	4 cut(s)	22, 193, 661, 913
AjnI	CCWGG	2 cut(s)	389, 1007
AleI	CACNNNNGTG	1 cut(s)	812
Alw21I	GWGCWC	6 cut(s)	35, 484, 612, 819, 1131, 1293
Alw26I	GTCTC	2 cut(s)	779, 911
Alw44I	GTGCAC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	7 cut(s)	285, 393, 498, 540, 562, 1005, 1057
ApaI	GGGCCC	1 cut(s)	397
ApaLI	GTGCAC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	174, 221
ApoI	RAATTY	4 cut(s)	377, 717, 1196, 1430
ArsI	GACNNNNNNTTYG	2 cut(s)	1106, 1138
AsiGI	ACCGGT	1 cut(s)	1151
AspLEI	GCGC	3 cut(s)	165, 961, 1212
AspS9I	GGNCC	5 cut(s)	393, 394, 498, 1114, 1265
AsuC2I	CCSGG	2 cut(s)	740, 1111
AsuHPI	GGTGA	4 cut(s)	143, 225, 283, 799
AsuII	TTCGAA	1 cut(s)	466
AvaII	GGWCC	2 cut(s)	1114, 1265
BaeGI	GKGCMC	3 cut(s)	35, 397, 1627
BanI	GGYRCC	1 cut(s)	1209
BanII	GRGCYC	3 cut(s)	397, 1131, 1305
BarI	GAAGNNNNNNTAC	2 cut(s)	1408, 1440
BbsI	GAAGAC	1 cut(s)	628
Bbv12I	GWGCWC	6 cut(s)	35, 484, 612, 819, 1131, 1293
BbvCI	CCTCAGC	2 cut(s)	226, 1473
BbvI	GCAGC	2 cut(s)	186, 233
BccI	CCATC	3 cut(s)	38, 1200, 1439
BceAI	ACGGC	2 cut(s)	577, 691
BciT130I	CCWGG	2 cut(s)	391, 1009
BclI	TGATCA	2 cut(s)	1018, 1456
BcnI	CCSGG	2 cut(s)	740, 1111
BcoDI	GTCTC	2 cut(s)	779, 911
BfoI	RGCGCY	1 cut(s)	1213
BisI	GCNGC	7 cut(s)	81, 175, 214, 222, 317, 583, 832
BlpI	GCTNAGC	1 cut(s)	606
BlsI	GCNGC	7 cut(s)	82, 176, 215, 223, 318, 584, 833
Bme1390I	CCNGG	4 cut(s)	391, 740, 1009, 1111
Bme18I	GGWCC	2 cut(s)	1114, 1265
BmgT120I	GGNCC	5 cut(s)	393, 394, 498, 1114, 1265
BmiI	GGNNCC	3 cut(s)	395, 1115, 1211
BmrFI	CCNGG	4 cut(s)	391, 740, 1009, 1111
BmsI	GCATC	4 cut(s)	127, 745, 1383, 1588
BpiI	GAAGAC	1 cut(s)	628
BpmI	CTGGAG	2 cut(s)	126, 224
Bpu10I	CCTNAGC	2 cut(s)	226, 1473
Bpu1102I	GCTNAGC	1 cut(s)	606
Bpu14I	TTCGAA	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	1595
BpuMI	CCSGG	2 cut(s)	740, 1111
Bsa29I	ATCGAT	1 cut(s)	402
BsaHI	GRCGYC	2 cut(s)	744, 1210
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	8 cut(s)	390, 559, 739, 810, 1008, 1054, 1110, 1379
BsaWI	WCCGGW	2 cut(s)	235, 1151
BsaXI	ACNNNNNCTCC	2 cut(s)	1020, 1050
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 363, 525
Bse118I	RCCGGY	3 cut(s)	542, 902, 1151
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	2 cut(s)	391, 1009
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	8 cut(s)	390, 559, 739, 810, 1008, 1054, 1110, 1379
BseGI	GGATG	4 cut(s)	49, 167, 556, 1032
BseLI	CCNNNNNNNGG	3 cut(s)	177, 363, 525
BseMII	CTCAG	4 cut(s)	240, 597, 717, 1487
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	432, 1506
BseSI	GKGCMC	3 cut(s)	35, 397, 1627
BseXI	GCAGC	2 cut(s)	186, 233
Bsh1236I	CGCG	1 cut(s)	262
BshFI	GGCC	7 cut(s)	287, 395, 500, 542, 564, 1007, 1059
BshNI	GGYRCC	1 cut(s)	1209
BshTI	ACCGGT	1 cut(s)	1151
BshVI	ATCGAT	1 cut(s)	402
BsiHKAI	GWGCWC	6 cut(s)	35, 484, 612, 819, 1131, 1293
BsiSI	CCGG	6 cut(s)	236, 543, 739, 903, 1110, 1152
BslFI	GGGAC	4 cut(s)	581, 684, 731, 1127
BslI	CCNNNNNNNGG	3 cut(s)	177, 363, 525
BsmAI	GTCTC	2 cut(s)	779, 911
BsmFI	GGGAC	4 cut(s)	581, 684, 731, 1127
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	7 cut(s)	287, 395, 500, 542, 564, 1007, 1059
Bso31I	GGTCTC	1 cut(s)	911
Bsp119I	TTCGAA	1 cut(s)	466
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	9 cut(s)	35, 397, 484, 612, 819, 1131, 1293, 1305, 1627
Bsp143I	GATC	7 cut(s)	157, 351, 399, 1018, 1270, 1456, 1604
Bsp1720I	GCTNAGC	1 cut(s)	606
Bsp19I	CCATGG	1 cut(s)	1054
BspANI	GGCC	7 cut(s)	287, 395, 500, 542, 564, 1007, 1059
BspCNI	CTCAG	4 cut(s)	239, 598, 718, 1486
BspDI	ATCGAT	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	262
BspHI	TCATGA	3 cut(s)	459, 484, 930
BspLI	GGNNCC	3 cut(s)	395, 1115, 1211
BspPI	GGATC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	1209
BspTNI	GGTCTC	1 cut(s)	911
BsrBI	CCGCTC	2 cut(s)	80, 417
BsrFI	RCCGGY	3 cut(s)	542, 902, 1151
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	3 cut(s)	542, 902, 1151
BssECI	CCNNGG	8 cut(s)	390, 559, 739, 810, 1008, 1054, 1110, 1379
BssMI	GATC	7 cut(s)	157, 351, 399, 1018, 1270, 1456, 1604
BssNI	GRCGYC	2 cut(s)	744, 1210
BssT1I	CCWWGG	3 cut(s)	810, 1054, 1379
Bst2UI	CCWGG	2 cut(s)	391, 1009
Bst4CI	ACNGT	1 cut(s)	1469
Bst6I	CTCTTC	2 cut(s)	914, 1383
BstACI	GRCGYC	2 cut(s)	744, 1210
BstBI	TTCGAA	1 cut(s)	466
BstC8I	GCNNGC	3 cut(s)	544, 1214, 1479
BstDEI	CTNAG	5 cut(s)	226, 606, 726, 864, 1473
BstDSI	CCRYGG	2 cut(s)	559, 1054
BstF5I	GGATG	4 cut(s)	49, 167, 556, 1032
BstFNI	CGCG	1 cut(s)	262
BstH2I	RGCGCY	1 cut(s)	1213
BstHHI	GCGC	3 cut(s)	165, 961, 1212
BstKTI	GATC	7 cut(s)	160, 354, 402, 1021, 1273, 1459, 1607
BstMAI	GTCTC	2 cut(s)	779, 911
BstMBI	GATC	7 cut(s)	157, 351, 399, 1018, 1270, 1456, 1604
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 227, 539
BstNI	CCWGG	2 cut(s)	391, 1009
BstNSI	RCATGY	2 cut(s)	635, 1048
BstSCI	CCNGG	4 cut(s)	389, 738, 1007, 1109
BstSLI	GKGCMC	3 cut(s)	35, 397, 1627
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	186, 233
BstV2I	GAAGAC	1 cut(s)	628
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	402
BsuRI	GGCC	7 cut(s)	287, 395, 500, 542, 564, 1007, 1059
BsuTUI	ATCGAT	1 cut(s)	402
BtgI	CCRYGG	2 cut(s)	559, 1054
BtsCI	GGATG	4 cut(s)	49, 167, 556, 1032
BtsI	GCAGTG	2 cut(s)	215, 384
BtsIMutI	CAGTG	2 cut(s)	215, 384
Cac8I	GCNNGC	3 cut(s)	544, 1214, 1479
CciI	TCATGA	3 cut(s)	459, 484, 930
CfoI	GCGC	3 cut(s)	165, 961, 1212
Cfr10I	RCCGGY	3 cut(s)	542, 902, 1151
Cfr13I	GGNCC	5 cut(s)	393, 394, 498, 1114, 1265
ClaI	ATCGAT	1 cut(s)	402
CseI	GACGC	1 cut(s)	733
CspAI	ACCGGT	1 cut(s)	1151
DdeI	CTNAG	5 cut(s)	226, 606, 726, 864, 1473
DinI	GGCGCC	1 cut(s)	1211
DpnI	GATC	7 cut(s)	159, 353, 401, 1020, 1272, 1458, 1606
DpnII	GATC	7 cut(s)	157, 351, 399, 1018, 1270, 1456, 1604
Eam1104I	CTCTTC	2 cut(s)	914, 1383
EarI	CTCTTC	2 cut(s)	914, 1383
EciI	GGCGGA	2 cut(s)	562, 818
Ecl136II	GAGCTC	1 cut(s)	1129
Eco130I	CCWWGG	3 cut(s)	810, 1054, 1379
Eco24I	GRGCYC	3 cut(s)	397, 1131, 1305
Eco31I	GGTCTC	1 cut(s)	911
Eco47I	GGWCC	2 cut(s)	1114, 1265
Eco53kI	GAGCTC	1 cut(s)	1129
Eco57I	CTGAAG	2 cut(s)	621, 1382
EcoICRI	GAGCTC	1 cut(s)	1129
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	389, 1007
EcoT14I	CCWWGG	3 cut(s)	810, 1054, 1379
EcoT38I	GRGCYC	3 cut(s)	397, 1131, 1305
EgeI	GGCGCC	1 cut(s)	1211
EheI	GGCGCC	1 cut(s)	1211
ErhI	CCWWGG	3 cut(s)	810, 1054, 1379
FalI	AAGNNNNNCTT	2 cut(s)	1380, 1412
FaqI	GGGAC	4 cut(s)	581, 684, 731, 1127
FauI	CCCGC	2 cut(s)	170, 710
FbaI	TGATCA	2 cut(s)	1018, 1456
FblI	GTMKAC	1 cut(s)	1464
Fnu4HI	GCNGC	7 cut(s)	81, 175, 214, 222, 317, 583, 832
FokI	GGATG	4 cut(s)	56, 154, 563, 1019
FriOI	GRGCYC	3 cut(s)	397, 1131, 1305
Fsp4HI	GCNGC	7 cut(s)	81, 175, 214, 222, 317, 583, 832
GlaI	GCGC	3 cut(s)	164, 960, 1211
GluI	GCNGC	7 cut(s)	81, 175, 214, 222, 317, 583, 832
GsuI	CTGGAG	2 cut(s)	126, 224
HaeII	RGCGCY	1 cut(s)	1213
HaeIII	GGCC	7 cut(s)	287, 395, 500, 542, 564, 1007, 1059
HapII	CCGG	6 cut(s)	236, 543, 739, 903, 1110, 1152
HgaI	GACGC	1 cut(s)	733
HhaI	GCGC	3 cut(s)	165, 961, 1212
Hin1I	GRCGYC	2 cut(s)	744, 1210
Hin6I	GCGC	3 cut(s)	163, 959, 1210
HinP1I	GCGC	3 cut(s)	163, 959, 1210
HinfI	GANTC	8 cut(s)	72, 253, 281, 463, 994, 1189, 1240, 1260
HpaII	CCGG	6 cut(s)	236, 543, 739, 903, 1110, 1152
HphI	GGTGA	4 cut(s)	143, 225, 283, 799
Hpy166II	GTNNAC	3 cut(s)	33, 871, 1465
Hpy188I	TCNGA	6 cut(s)	71, 77, 1077, 1194, 1245, 1584
Hpy188III	TCNNGA	8 cut(s)	460, 485, 931, 991, 1231, 1268, 1520, 1608
Hpy8I	GTNNAC	3 cut(s)	33, 871, 1465
Hpy99I	CGWCG	1 cut(s)	1539
HpyAV	CCTTC	4 cut(s)	298, 304, 575, 1099
HpyCH4III	ACNGT	1 cut(s)	1469
HpyCH4V	TGCA	6 cut(s)	33, 624, 943, 1002, 1051, 1617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 227, 539
HpyF3I	CTNAG	5 cut(s)	226, 606, 726, 864, 1473
Hsp92I	GRCGYC	2 cut(s)	744, 1210
HspAI	GCGC	3 cut(s)	163, 959, 1210
KasI	GGCGCC	1 cut(s)	1209
KroI	GCCGGC	1 cut(s)	542
KroNI	GCCGGC	1 cut(s)	544
Ksp22I	TGATCA	2 cut(s)	1018, 1456
Kzo9I	GATC	7 cut(s)	157, 351, 399, 1018, 1270, 1456, 1604
LmnI	GCTCC	5 cut(s)	77, 107, 205, 238, 414
Lsp1109I	GCAGC	2 cut(s)	186, 233
LweI	GCATC	4 cut(s)	127, 745, 1383, 1588
MaeIII	GTNAC	3 cut(s)	436, 453, 970
MalI	GATC	7 cut(s)	159, 353, 401, 1020, 1272, 1458, 1606
MbiI	CCGCTC	2 cut(s)	80, 417
MboI	GATC	7 cut(s)	157, 351, 399, 1018, 1270, 1456, 1604
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	9 cut(s)	35, 397, 484, 612, 819, 1131, 1293, 1305, 1627
MluCI	AATT	7 cut(s)	377, 717, 1014, 1071, 1196, 1430, 1493
Mly113I	GGCGCC	1 cut(s)	1210
MlyI	GAGTC	4 cut(s)	81, 988, 1249, 1269
MmeI	TCCRAC	3 cut(s)	55, 1091, 1302
MroNI	GCCGGC	1 cut(s)	542
MseI	TTAA	3 cut(s)	645, 1598, 1633
MslI	CAYNNNNRTG	3 cut(s)	38, 146, 812
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	6 cut(s)	236, 543, 739, 903, 1110, 1152
MspR9I	CCNGG	4 cut(s)	391, 740, 1009, 1111
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	391, 1009
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	3 cut(s)	171, 227, 539
NaeI	GCCGGC	1 cut(s)	544
NarI	GGCGCC	1 cut(s)	1210
NciI	CCSGG	2 cut(s)	740, 1111
NcoI	CCATGG	1 cut(s)	1054
NdeII	GATC	7 cut(s)	157, 351, 399, 1018, 1270, 1456, 1604
NgoMIV	GCCGGC	1 cut(s)	542
NlaIV	GGNNCC	3 cut(s)	395, 1115, 1211
NmuCI	GTSAC	2 cut(s)	436, 970
NspI	RCATGY	2 cut(s)	635, 1048
NspV	TTCGAA	1 cut(s)	466
OliI	CACNNNNGTG	1 cut(s)	812
PagI	TCATGA	3 cut(s)	459, 484, 930
PciI	ACATGT	2 cut(s)	631, 1044
PctI	GAATGC	1 cut(s)	91
PdiI	GCCGGC	1 cut(s)	544
PfeI	GAWTC	4 cut(s)	253, 281, 463, 1189
PinAI	ACCGGT	1 cut(s)	1151
PkrI	GCNGC	7 cut(s)	82, 176, 215, 223, 318, 584, 833
PleI	GAGTC	4 cut(s)	80, 988, 1248, 1268
PluTI	GGCGCC	1 cut(s)	1213
PpsI	GAGTC	4 cut(s)	80, 988, 1248, 1268
PscI	ACATGT	2 cut(s)	631, 1044
PsiI	TTATAA	1 cut(s)	978
Psp124BI	GAGCTC	1 cut(s)	1131
Psp6I	CCWGG	2 cut(s)	389, 1007
PspGI	CCWGG	2 cut(s)	389, 1007
PspN4I	GGNNCC	3 cut(s)	395, 1115, 1211
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	5 cut(s)	393, 394, 498, 1114, 1265
PsuI	RGATCY	1 cut(s)	157
RseI	CAYNNNNRTG	3 cut(s)	38, 146, 812
SacI	GAGCTC	1 cut(s)	1131
SaqAI	TTAA	3 cut(s)	645, 1598, 1633
SatI	GCNGC	7 cut(s)	81, 175, 214, 222, 317, 583, 832
Sau3AI	GATC	7 cut(s)	157, 351, 399, 1018, 1270, 1456, 1604
Sau96I	GGNCC	5 cut(s)	393, 394, 498, 1114, 1265
SchI	GAGTC	4 cut(s)	81, 988, 1249, 1269
ScrFI	CCNGG	4 cut(s)	391, 740, 1009, 1111
SduI	GDGCHC	9 cut(s)	35, 397, 484, 612, 819, 1131, 1293, 1305, 1627
SfaNI	GCATC	4 cut(s)	127, 745, 1383, 1588
SfoI	GGCGCC	1 cut(s)	1211
SfuI	TTCGAA	1 cut(s)	466
SinI	GGWCC	2 cut(s)	1114, 1265
SmiMI	CAYNNNNRTG	3 cut(s)	38, 146, 812
SmlI	CTYRAG	1 cut(s)	1574
SmoI	CTYRAG	1 cut(s)	1574
Sse9I	AATT	7 cut(s)	377, 717, 1014, 1071, 1196, 1430, 1493
SspDI	GGCGCC	1 cut(s)	1209
SspI	AATATT	1 cut(s)	1340
SstI	GAGCTC	1 cut(s)	1131
StyD4I	CCNGG	4 cut(s)	389, 738, 1007, 1109
StyI	CCWWGG	3 cut(s)	810, 1054, 1379
TaaI	ACNGT	1 cut(s)	1469
TaqI	TCGA	6 cut(s)	347, 381, 402, 466, 1204, 1230
TaqII	GACCGA	2 cut(s)	729, 1253
TasI	AATT	7 cut(s)	377, 717, 1014, 1071, 1196, 1430, 1493
TauI	GCSGC	5 cut(s)	83, 216, 319, 585, 834
TfiI	GAWTC	4 cut(s)	253, 281, 463, 1189
Tru1I	TTAA	3 cut(s)	645, 1598, 1633
Tru9I	TTAA	3 cut(s)	645, 1598, 1633
TscAI	CASTG	2 cut(s)	215, 391
TseFI	GTSAC	2 cut(s)	436, 970
TseI	GCWGC	2 cut(s)	174, 221
Tsp45I	GTSAC	2 cut(s)	436, 970
TspDTI	ATGAA	7 cut(s)	420, 759, 851, 860, 947, 1157, 1367
TspGWI	ACGGA	2 cut(s)	1085, 1523
TspRI	CASTG	2 cut(s)	215, 391
VneI	GTGCAC	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	1114, 1265
XapI	RAATTY	4 cut(s)	377, 717, 1196, 1430
XceI	RCATGY	2 cut(s)	635, 1048
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1442
XmiI	GTMKAC	1 cut(s)	1464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.