Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009369

Physical Location & Seq

Genomic Coordinates Reverse (-)

47834483 .. 47836132

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG375700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1650 bp

ATGCGAAAAATGAGAAACATTAGCAGATTGAAGTGGTTGTGCAGGATTATGGTTGAAAAAGCCCAGGGCGTGACGATTGGTGGTGCGATTGGCATGAGGGTCAGAGTGGGAGCGGCTCAAACGCATTCCTTTACAACGGGAGCATACTCTGGGAAGTCAAGGGATGATGATAATGCCATAAAAATGATTGTGGATCTGCGCTCATCCTGCAGCGGATGTGTGGAGCTGAAGAAGAAGCTGGAGCAGTGCGGCGTAGCAGCCTCAGCCTCGGCCTCACCGGAGCTGGTGGTGGAGATTCTTTCGCGTTTTCGCAACGATTGGGAATCGGCCTTCACCTTCTTCCTCTGGGCAGGAAAGCAGCGACCCCATTCCGTGCGTGAATACCACTCGATGATCTCCATTCTGGGGAAGATGAGGAAATTCGACACTGCCTGGGCCCTGATCGATGAAATGCGGAGCGGTTCGGGTTCGGGTTCGGGTTCTTCCCTTGTCACTCCTCAAACTCTGTTACTCATGATTCGAAAATACTCTTGTGCTCATGATGTTGGGAGGGCCATTCACACTTTCTACGCCTATAAGCGGTTTGCGTTTGAGGCCGGCATGGATGACTTCCAAGGCCTTCTCTCCGCCCTCTGCCGCTACAAAAATGTCCCTGAAGCTGAGCACTTGCTTTTCTGCAACTCACATGTCTTCCCATTTAACACCAAGAGCTTCAACATTATTCTCAACGGCTGGTCTAATATCATCGTTAGTCCCCGCCACGCCGACCGAATTTGGACTGAAATGACCAACCGGGGCGTCCCCCACGATGCCATTTCCTATTCATGTCTCATTTCTTGCCATTCCAAATCCTCCAATCTCACCAAGGTGCTCAACATCTTCCGCCGCATGAACAAAATGAATGTTGAGCCTGACACTAAGGTTTACAATGCCCTCATTTTCGCTCTTGGAAAAGCCGGTCTCTTCAAAGAAGCTACCAATCTCATGAAAACCATGCAAGAAAAGGGTCTTGCGCCCAACATTGTCACTTATAACTCCCTCATCAAGACTCTCTGCAAGGCCAGGGAAATTGATCAAGCTACACACATTCTCCATGACATGTTGCACCATGGCCTTGTTCCAACAATTCGGACTTACCACGCCTTCTTCCGTATTTTATCAACCGGGGACCAAGTGTTTGAGCTCTTGGAAAAGATGAAAAACACCGGTTGCCCTCCAAATACTGATACATACATAATGTTGATTCGGAAATTCTGTCGATGGTGCCAGCTTGATAATGTCTTCAAGATTTGGAGTCAGATGAGCGAGAATGGAGTCGGTCCTGATCGTAGCTCATATATTGTGCTCATACATGGGCTCTTTCTAAATGCCAAGTTGGAGGAAGCCCACAAATATTATATGGAGATGAAAGATAGACACTATTTGCCAGAACCAAGGACAGAAGAGATGCTTCAGGCATGGTTGTCTGGTAAGCAGACTTCCAAATTCCAAACAACAGATGGAGAAGTTGATCAAGTGGATTGTACTCAGCCAGCTACGAATACTAAACTAGTAATCCCCAAGAAATCTCCTCAGGAAAAAGATTTCCGTCGGCAACCTGAAAGTAGGAAAGTTGTAAGAGAGCGGGGTTTTTCGTTTTGGGAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

549

Amino Acids

62.67

Weight (kDa)

9.36

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	257 - 318	4.4e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	258 - 385	5e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	270 - 315	1.8e-07	PPR repeat family
PPR_2	PF13041	304 - 353	2e-14	PPR repeat family
PPR_3	PF13812	328 - 382	1.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	335 - 367	1.4e-09	PPR repeat
PPR_2	PF13041	339 - 384	4.2e-11	PPR repeat family
PPR_2	PF13041	390 - 420	1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15010
fragaria_vesca	FvH4_1g14610 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380
malus_domestica	MD12G1000700.v1.1
prunus_persica	Prupe.7G001100_v2.0.a1 Prupe.7G001100_v2.0.a1 Prupe.7G001100_v2.0.a1
pyrus_communis	pycom12g00060
rosa_chinensis	RchiOBHm_Chr3g0497531
rosa_laevigata	RLG00000022455
rosa_multiflora	Rmu_sc0000093.1_g000015
rosa_roxburghii	Rroxscaffold_6G00387950
rosa_rugosa	Rorug03G0293400
rosa_samantha	Rh3AG337300 Rh3BG375700 Rh3CG371700 Rh3DG372200
rosa_wichuraiana	Rw0G018510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1032
AccB1I	GGYRCC	1 cut(s)	1263
AccBSI	CCGCTC	3 cut(s)	113, 459, 1624
AccII	CGCG	1 cut(s)	304
AclWI	GGATC	1 cut(s)	201
AcsI	RAATTY	4 cut(s)	419, 771, 1250, 1484
AcuI	CTGAAG	3 cut(s)	248, 675, 1436
AcyI	GRCGYC	1 cut(s)	798
AfaI	GTAC	1 cut(s)	1525
AfiI	CCNNNNNNNGG	2 cut(s)	405, 579
AflIII	ACRYGT	2 cut(s)	685, 1098
AgeI	ACCGGT	1 cut(s)	1205
AgsI	TTSAA	5 cut(s)	31, 56, 715, 967, 1285
AhlI	ACTAGT	1 cut(s)	1549
AjnI	CCWGG	3 cut(s)	63, 431, 1061
AleI	CACNNNNGTG	1 cut(s)	866
Alw21I	GWGCWC	5 cut(s)	538, 666, 873, 1185, 1347
Alw26I	GTCTC	2 cut(s)	833, 965
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	8 cut(s)	270, 327, 435, 552, 594, 616, 1059, 1111
ApaI	GGGCCC	1 cut(s)	439
ApeKI	GCWGC	3 cut(s)	210, 257, 358
ApoI	RAATTY	4 cut(s)	419, 771, 1250, 1484
ArsI	GACNNNNNNTTYG	2 cut(s)	1160, 1192
AsiGI	ACCGGT	1 cut(s)	1205
AspLEI	GCGC	2 cut(s)	201, 1015
AspS9I	GGNCC	5 cut(s)	435, 436, 552, 1168, 1319
AsuC2I	CCSGG	2 cut(s)	794, 1165
AsuHPI	GGTGA	3 cut(s)	267, 325, 853
AsuII	TTCGAA	1 cut(s)	520
AvaII	GGWCC	2 cut(s)	1168, 1319
AxyI	CCTNAGG	1 cut(s)	1572
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	1263
BanII	GRGCYC	3 cut(s)	439, 1185, 1359
BarI	GAAGNNNNNNTAC	2 cut(s)	1462, 1494
BbsI	GAAGAC	2 cut(s)	682, 1273
Bbv12I	GWGCWC	5 cut(s)	538, 666, 873, 1185, 1347
BbvCI	CCTCAGC	1 cut(s)	262
BbvI	GCAGC	3 cut(s)	222, 269, 370
BccI	CCATC	2 cut(s)	1254, 1493
BceAI	ACGGC	1 cut(s)	745
BciT130I	CCWGG	3 cut(s)	65, 433, 1063
BclI	TGATCA	2 cut(s)	1072, 1510
BcnI	CCSGG	2 cut(s)	794, 1165
BcoDI	GTCTC	2 cut(s)	833, 965
BcuI	ACTAGT	1 cut(s)	1549
BfaI	CTAG	1 cut(s)	1550
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	7 cut(s)	114, 211, 250, 258, 359, 637, 886
BlpI	GCTNAGC	1 cut(s)	660
BlsI	GCNGC	7 cut(s)	115, 212, 251, 259, 360, 638, 887
Bme1390I	CCNGG	5 cut(s)	65, 433, 794, 1063, 1165
Bme18I	GGWCC	2 cut(s)	1168, 1319
BmgT120I	GGNCC	5 cut(s)	435, 436, 552, 1168, 1319
BmiI	GGNNCC	3 cut(s)	437, 1169, 1265
BmrFI	CCNGG	5 cut(s)	65, 433, 794, 1063, 1165
BmsI	GCATC	2 cut(s)	799, 1437
BpiI	GAAGAC	2 cut(s)	682, 1273
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	660
Bpu14I	TTCGAA	1 cut(s)	520
BpuMI	CCSGG	2 cut(s)	794, 1165
Bsa29I	ATCGAT	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	798
BsaI	GGTCTC	1 cut(s)	965
BsaWI	WCCGGW	2 cut(s)	277, 1205
BsaXI	ACNNNNNCTCC	2 cut(s)	1074, 1104
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 579
Bse118I	RCCGGY	3 cut(s)	596, 956, 1205
Bse21I	CCTNAGG	1 cut(s)	1572
BseBI	CCWGG	3 cut(s)	65, 433, 1063
BseCI	ATCGAT	1 cut(s)	444
BseGI	GGATG	4 cut(s)	169, 203, 221, 610
BseLI	CCNNNNNNNGG	2 cut(s)	405, 579
BseMII	CTCAG	4 cut(s)	276, 651, 1541, 1586
BseRI	GAGGAG	2 cut(s)	486, 1560
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	3 cut(s)	222, 269, 370
BsgI	GTGCAG	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	304
Bsh1285I	CGRYCG	1 cut(s)	769
BshFI	GGCC	8 cut(s)	272, 329, 437, 554, 596, 618, 1061, 1113
BshNI	GGYRCC	1 cut(s)	1263
BshTI	ACCGGT	1 cut(s)	1205
BshVI	ATCGAT	1 cut(s)	444
BsiEI	CGRYCG	1 cut(s)	769
BsiHKAI	GWGCWC	5 cut(s)	538, 666, 873, 1185, 1347
BsiSI	CCGG	6 cut(s)	278, 597, 793, 957, 1164, 1206
BslFI	GGGAC	4 cut(s)	635, 738, 785, 1181
BslI	CCNNNNNNNGG	2 cut(s)	405, 579
BsmAI	GTCTC	2 cut(s)	833, 965
BsmFI	GGGAC	4 cut(s)	635, 738, 785, 1181
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	8 cut(s)	272, 329, 437, 554, 596, 618, 1061, 1113
Bso31I	GGTCTC	1 cut(s)	965
Bsp119I	TTCGAA	1 cut(s)	520
Bsp120I	GGGCCC	1 cut(s)	435
Bsp1286I	GDGCHC	7 cut(s)	439, 538, 666, 873, 1185, 1347, 1359
Bsp143I	GATC	6 cut(s)	193, 393, 441, 1072, 1324, 1510
Bsp1720I	GCTNAGC	1 cut(s)	660
Bsp19I	CCATGG	1 cut(s)	1108
BspANI	GGCC	8 cut(s)	272, 329, 437, 554, 596, 618, 1061, 1113
BspCNI	CTCAG	4 cut(s)	275, 652, 1540, 1585
BspDI	ATCGAT	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	304
BspHI	TCATGA	3 cut(s)	513, 538, 984
BspLI	GGNNCC	3 cut(s)	437, 1169, 1265
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	201
BspT104I	TTCGAA	1 cut(s)	520
BspT107I	GGYRCC	1 cut(s)	1263
BspTNI	GGTCTC	1 cut(s)	965
BsrBI	CCGCTC	3 cut(s)	113, 459, 1624
BsrFI	RCCGGY	3 cut(s)	596, 956, 1205
BssAI	RCCGGY	3 cut(s)	596, 956, 1205
BssMI	GATC	6 cut(s)	193, 393, 441, 1072, 1324, 1510
BssNI	GRCGYC	1 cut(s)	798
BssT1I	CCWWGG	4 cut(s)	613, 864, 1108, 1433
Bst2UI	CCWGG	3 cut(s)	65, 433, 1063
Bst6I	CTCTTC	2 cut(s)	968, 1437
BstACI	GRCGYC	1 cut(s)	798
BstBI	TTCGAA	1 cut(s)	520
BstC8I	GCNNGC	3 cut(s)	598, 1268, 1533
BstDEI	CTNAG	5 cut(s)	262, 660, 918, 1527, 1572
BstDSI	CCRYGG	1 cut(s)	1108
BstF5I	GGATG	4 cut(s)	169, 203, 221, 610
BstFNI	CGCG	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	201, 1015
BstKTI	GATC	6 cut(s)	196, 396, 444, 1075, 1327, 1513
BstMAI	GTCTC	2 cut(s)	833, 965
BstMBI	GATC	6 cut(s)	193, 393, 441, 1072, 1324, 1510
BstMCI	CGRYCG	1 cut(s)	769
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 263, 593
BstNI	CCWGG	3 cut(s)	65, 433, 1063
BstNSI	RCATGY	2 cut(s)	689, 1102
BstSCI	CCNGG	5 cut(s)	63, 431, 792, 1061, 1163
BstSFI	CTRYAG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	439
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	222, 269, 370
BstV2I	GAAGAC	2 cut(s)	682, 1273
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	444
Bsu36I	CCTNAGG	1 cut(s)	1572
BsuRI	GGCC	8 cut(s)	272, 329, 437, 554, 596, 618, 1061, 1113
BsuTUI	ATCGAT	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	1108
BtsCI	GGATG	4 cut(s)	169, 203, 221, 610
BtsI	GCAGTG	2 cut(s)	251, 426
BtsIMutI	CAGTG	2 cut(s)	251, 426
Cac8I	GCNNGC	3 cut(s)	598, 1268, 1533
CciI	TCATGA	3 cut(s)	513, 538, 984
CfoI	GCGC	2 cut(s)	201, 1015
Cfr10I	RCCGGY	3 cut(s)	596, 956, 1205
Cfr13I	GGNCC	5 cut(s)	435, 436, 552, 1168, 1319
ClaI	ATCGAT	1 cut(s)	444
CseI	GACGC	1 cut(s)	787
Csp6I	GTAC	1 cut(s)	1524
CspAI	ACCGGT	1 cut(s)	1205
CviQI	GTAC	1 cut(s)	1524
DdeI	CTNAG	5 cut(s)	262, 660, 918, 1527, 1572
DpnI	GATC	6 cut(s)	195, 395, 443, 1074, 1326, 1512
DpnII	GATC	6 cut(s)	193, 393, 441, 1072, 1324, 1510
Eam1104I	CTCTTC	2 cut(s)	968, 1437
EarI	CTCTTC	2 cut(s)	968, 1437
EciI	GGCGGA	2 cut(s)	616, 872
Ecl136II	GAGCTC	1 cut(s)	1183
Eco130I	CCWWGG	4 cut(s)	613, 864, 1108, 1433
Eco147I	AGGCCT	1 cut(s)	618
Eco24I	GRGCYC	3 cut(s)	439, 1185, 1359
Eco31I	GGTCTC	1 cut(s)	965
Eco47I	GGWCC	2 cut(s)	1168, 1319
Eco53kI	GAGCTC	1 cut(s)	1183
Eco57I	CTGAAG	3 cut(s)	248, 675, 1436
Eco81I	CCTNAGG	1 cut(s)	1572
EcoICRI	GAGCTC	1 cut(s)	1183
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	3 cut(s)	63, 431, 1061
EcoT14I	CCWWGG	4 cut(s)	613, 864, 1108, 1433
EcoT38I	GRGCYC	3 cut(s)	439, 1185, 1359
ErhI	CCWWGG	4 cut(s)	613, 864, 1108, 1433
FalI	AAGNNNNNCTT	2 cut(s)	1434, 1466
FaqI	GGGAC	4 cut(s)	635, 738, 785, 1181
FauI	CCCGC	2 cut(s)	764, 1617
FbaI	TGATCA	2 cut(s)	1072, 1510
Fnu4HI	GCNGC	7 cut(s)	114, 211, 250, 258, 359, 637, 886
FokI	GGATG	4 cut(s)	176, 190, 228, 617
FriOI	GRGCYC	3 cut(s)	439, 1185, 1359
Fsp4HI	GCNGC	7 cut(s)	114, 211, 250, 258, 359, 637, 886
FspBI	CTAG	1 cut(s)	1550
GlaI	GCGC	2 cut(s)	200, 1014
GluI	GCNGC	7 cut(s)	114, 211, 250, 258, 359, 637, 886
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	8 cut(s)	272, 329, 437, 554, 596, 618, 1061, 1113
HapII	CCGG	6 cut(s)	278, 597, 793, 957, 1164, 1206
HgaI	GACGC	1 cut(s)	787
HhaI	GCGC	2 cut(s)	201, 1015
Hin1I	GRCGYC	1 cut(s)	798
Hin6I	GCGC	2 cut(s)	199, 1013
HinP1I	GCGC	2 cut(s)	199, 1013
HinfI	GANTC	7 cut(s)	295, 323, 517, 1048, 1243, 1294, 1314
HpaII	CCGG	6 cut(s)	278, 597, 793, 957, 1164, 1206
HphI	GGTGA	3 cut(s)	267, 325, 853
Hpy166II	GTNNAC	1 cut(s)	925
Hpy188I	TCNGA	4 cut(s)	104, 1131, 1248, 1299
Hpy188III	TCNNGA	7 cut(s)	514, 539, 985, 1045, 1285, 1322, 1574
Hpy8I	GTNNAC	1 cut(s)	925
Hpy99I	CGWCG	1 cut(s)	1593
HpyAV	CCTTC	4 cut(s)	340, 346, 629, 1153
HpyCH4V	TGCA	6 cut(s)	42, 210, 678, 997, 1056, 1105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 263, 593
HpyF3I	CTNAG	5 cut(s)	262, 660, 918, 1527, 1572
Hsp92I	GRCGYC	1 cut(s)	798
HspAI	GCGC	2 cut(s)	199, 1013
KroI	GCCGGC	1 cut(s)	596
KroNI	GCCGGC	1 cut(s)	598
Ksp22I	TGATCA	2 cut(s)	1072, 1510
Kzo9I	GATC	6 cut(s)	193, 393, 441, 1072, 1324, 1510
LmnI	GCTCC	7 cut(s)	110, 140, 223, 241, 280, 456, 1642
Lsp1109I	GCAGC	3 cut(s)	222, 269, 370
LweI	GCATC	2 cut(s)	799, 1437
MaeI	CTAG	1 cut(s)	1550
MaeIII	GTNAC	4 cut(s)	70, 490, 507, 1024
MalI	GATC	6 cut(s)	195, 395, 443, 1074, 1326, 1512
MbiI	CCGCTC	3 cut(s)	113, 459, 1624
MboI	GATC	6 cut(s)	193, 393, 441, 1072, 1324, 1510
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	7 cut(s)	439, 538, 666, 873, 1185, 1347, 1359
MluCI	AATT	6 cut(s)	419, 771, 1068, 1125, 1250, 1484
MlyI	GAGTC	3 cut(s)	1042, 1303, 1323
MmeI	TCCRAC	2 cut(s)	1145, 1356
MroNI	GCCGGC	1 cut(s)	596
MseI	TTAA	1 cut(s)	699
MslI	CAYNNNNRTG	2 cut(s)	182, 866
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	6 cut(s)	278, 597, 793, 957, 1164, 1206
MspR9I	CCNGG	5 cut(s)	65, 433, 794, 1063, 1165
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	3 cut(s)	65, 433, 1063
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	3 cut(s)	207, 263, 593
NaeI	GCCGGC	1 cut(s)	598
NciI	CCSGG	2 cut(s)	794, 1165
NcoI	CCATGG	1 cut(s)	1108
NdeII	GATC	6 cut(s)	193, 393, 441, 1072, 1324, 1510
NgoMIV	GCCGGC	1 cut(s)	596
NlaIV	GGNNCC	3 cut(s)	437, 1169, 1265
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	3 cut(s)	70, 490, 1024
NspI	RCATGY	2 cut(s)	689, 1102
NspV	TTCGAA	1 cut(s)	520
OliI	CACNNNNGTG	1 cut(s)	866
PagI	TCATGA	3 cut(s)	513, 538, 984
PasI	CCCWGGG	1 cut(s)	64
PceI	AGGCCT	1 cut(s)	618
PciI	ACATGT	2 cut(s)	685, 1098
PctI	GAATGC	1 cut(s)	124
PdiI	GCCGGC	1 cut(s)	598
PfeI	GAWTC	4 cut(s)	295, 323, 517, 1243
PinAI	ACCGGT	1 cut(s)	1205
PkrI	GCNGC	7 cut(s)	115, 212, 251, 259, 360, 638, 887
PleI	GAGTC	3 cut(s)	1042, 1302, 1322
PpsI	GAGTC	3 cut(s)	1042, 1302, 1322
PscI	ACATGT	2 cut(s)	685, 1098
PsiI	TTATAA	1 cut(s)	1032
Psp124BI	GAGCTC	1 cut(s)	1185
Psp6I	CCWGG	3 cut(s)	63, 431, 1061
PspGI	CCWGG	3 cut(s)	63, 431, 1061
PspN4I	GGNNCC	3 cut(s)	437, 1169, 1265
PspOMI	GGGCCC	1 cut(s)	435
PspPI	GGNCC	5 cut(s)	435, 436, 552, 1168, 1319
PstI	CTGCAG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	1 cut(s)	1525
RsaNI	GTAC	1 cut(s)	1524
RseI	CAYNNNNRTG	2 cut(s)	182, 866
SacI	GAGCTC	1 cut(s)	1185
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	7 cut(s)	114, 211, 250, 258, 359, 637, 886
Sau3AI	GATC	6 cut(s)	193, 393, 441, 1072, 1324, 1510
Sau96I	GGNCC	5 cut(s)	435, 436, 552, 1168, 1319
SchI	GAGTC	3 cut(s)	1042, 1303, 1323
ScrFI	CCNGG	5 cut(s)	65, 433, 794, 1063, 1165
SduI	GDGCHC	7 cut(s)	439, 538, 666, 873, 1185, 1347, 1359
SfaNI	GCATC	2 cut(s)	799, 1437
SfcI	CTRYAG	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	520
SinI	GGWCC	2 cut(s)	1168, 1319
SmiMI	CAYNNNNRTG	2 cut(s)	182, 866
SpeI	ACTAGT	1 cut(s)	1549
Sse9I	AATT	6 cut(s)	419, 771, 1068, 1125, 1250, 1484
SseBI	AGGCCT	1 cut(s)	618
SspI	AATATT	1 cut(s)	1394
SspMI	CTAG	1 cut(s)	1550
SstI	GAGCTC	1 cut(s)	1185
StuI	AGGCCT	1 cut(s)	618
StyD4I	CCNGG	5 cut(s)	63, 431, 792, 1061, 1163
StyI	CCWWGG	4 cut(s)	613, 864, 1108, 1433
TaqI	TCGA	5 cut(s)	389, 423, 444, 520, 1258
TaqII	GACCGA	2 cut(s)	783, 1307
TasI	AATT	6 cut(s)	419, 771, 1068, 1125, 1250, 1484
TatI	WGTACW	1 cut(s)	1523
TauI	GCSGC	4 cut(s)	116, 252, 639, 888
TfiI	GAWTC	4 cut(s)	295, 323, 517, 1243
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	2 cut(s)	251, 433
TseFI	GTSAC	3 cut(s)	70, 490, 1024
TseI	GCWGC	3 cut(s)	210, 257, 358
Tsp45I	GTSAC	3 cut(s)	70, 490, 1024
TspDTI	ATGAA	7 cut(s)	462, 813, 905, 914, 1001, 1211, 1421
TspGWI	ACGGA	3 cut(s)	361, 1139, 1577
TspRI	CASTG	2 cut(s)	251, 433
VpaK11BI	GGWCC	2 cut(s)	1168, 1319
XapI	RAATTY	4 cut(s)	419, 771, 1250, 1484
XceI	RCATGY	2 cut(s)	689, 1102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1496
XspI	CTAG	1 cut(s)	1550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.