Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009369

Physical Location & Seq

Genomic Coordinates Reverse (-)

47705848 .. 47714090

Gene Structure 8243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG371700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1635 bp

ATGCGAAAAATGAGAAACATTAGCAGATTGAAGTGGTTGTGCACGATTATGGTTGAAAAACCCCATGGCGTGACGATTGGCATGAGGGTCAGAGTCGGAGCGGCTCAAACGCATTCCTTTACAACGGGAGCATACTGTGGGAAGTCAAGGGATGATGATGATGCCATAAAAATGATTGTGGATCTGCGCTCATCCTGCAGCAGCGGGTGTGTGGAGCTGAAGAAGAAGCTGGAGCAGTGCGGCGTAGCAGCCTCAGCCTCAGCCTCACCGGAGCTGGTGGTGGAGATTCTTTCGCGTTTTCGCAACGATTGGGAATCGGCCTTCACCTTCTTCCTCTGGGCAGGAAAGCAGCGACCCCATTCCGTGCGTGAATACCACTCGATGATCTCCATTCTGGGGAAGATGAGGAAATTCGACACTGCCTGGGCCCTGATCGATGAAATGCGGAGCGGTTCGGGTTCGGGTTCTTCCCTCGTCACTCCTCAGACTCTGTTACTCATGATTCGAAAATACTCTTGTGCTCATGATGTTGGGAGGGCCATTCACACTTTCTACGCCTATAAGCGGTTTGCGTTTGAGGCCGGCATGGATGACTTCCACGGCCTTCTCTCCGCCCTCTGCCGCTACAAAAATGTCCCTGAAGCTGAGCACTTGCTTTTCTGCAACTCACATGTCTTCCCATTTAACACCAAGAGCTTCAACATTATTCTCAACGGCTGGTCTAATATCATCGTTAGTCCCCGCCACGCCGACCGAATTTGGACTGAAATGACCAACCGGGGCGTCCCCCACGATGCCATTTCCTATTCATGTCTCATTTCTTGCCATTCCAAATCCTCCAATCTCACCAAGGTGCTCAACATCTTCCGCCGCATGAACAAAATGAATGTTGAGCCTGACACTAAGGTTTACAATGCCCTCATTTTCGCTCTTGGAAAAGCCGGTCTCTTCAAAGAAGCTACCAATCTCATGAAAACCATGCAAGAAAAGGGTCTTGCGCCCAACATTGTCACTTATAACTCCCTCATCAAGACTCTCTGCAAGGCCAGGGAAATTGATCAAGCTACACACATTCTCCATGACATGTTGCGCCATGGCCTTGTTCCAACAATTCGGACTTACCATGCCTTCTTCCGTGTTTTATCAACCGGGGACCAAGTGTTTGAGCTCTTGGAAAAGATGAAAAACACCGGTTGCCCTCCAAATACTGATACATACATAATGTTGATTCGGAAATTCTGTCGATGGTGCCAGCTTGATAATGTCTTCAAGATTTGGAGTCAGATGAGCGAGAATGGAGTCGGTCCTGATCGTAGCTCATATATTGTGCTCATACATGGGCTCTTTCTAAATGCCAAGTTGGAGGAAGCCCACAAATATTATATGGAGATGAAAGATAGACATTATTTGCCAGAACCAAGGACAGAAGAGATGCTTCAGGCATGGTTGTCTGGTAAGCAGACTTCCAATTTCCAAACAACAGATGGAGAAGTTGATCAAGTGGATTGTACTCAGCCAGCTACCAATACTAAACTAGTAATCCCCAAGAAATCTCCTCAGGAAAAAGATTTCCGTCGGCAACCTGAAAGTAGGAAAGTTGTAAGAGAGCGGGGTTTTTCGTTTTGGGAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

544

Amino Acids

62.31

Weight (kDa)

9.26

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	252 - 313	4.4e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	253 - 381	2.8e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	265 - 310	1.8e-07	PPR repeat family
PPR_2	PF13041	299 - 348	2e-14	PPR repeat family
PPR_3	PF13812	304 - 346	3.2e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	323 - 378	7.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	330 - 362	1.3e-09	PPR repeat
PPR_2	PF13041	334 - 381	8.3e-12	PPR repeat family
PPR_3	PF13812	358 - 411	7.5e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	385 - 415	1.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15010
fragaria_vesca	FvH4_1g14610 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380
malus_domestica	MD12G1000700.v1.1
prunus_persica	Prupe.7G001100_v2.0.a1 Prupe.7G001100_v2.0.a1 Prupe.7G001100_v2.0.a1
pyrus_communis	pycom12g00060
rosa_chinensis	RchiOBHm_Chr3g0497531
rosa_laevigata	RLG00000022455
rosa_multiflora	Rmu_sc0000093.1_g000015
rosa_roxburghii	Rroxscaffold_6G00387950
rosa_rugosa	Rorug03G0293400
rosa_samantha	Rh3AG337300 Rh3BG375700 Rh3CG371700 Rh3DG372200
rosa_wichuraiana	Rw0G018510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1017
AccB1I	GGYRCC	1 cut(s)	1248
AccBSI	CCGCTC	3 cut(s)	101, 450, 1609
AccII	CGCG	1 cut(s)	295
AclWI	GGATC	1 cut(s)	189
AcsI	RAATTY	3 cut(s)	410, 756, 1235
AcuI	CTGAAG	3 cut(s)	239, 660, 1421
AcyI	GRCGYC	1 cut(s)	783
AfaI	GTAC	1 cut(s)	1510
AfiI	CCNNNNNNNGG	2 cut(s)	396, 564
AflIII	ACRYGT	2 cut(s)	670, 1083
AgeI	ACCGGT	1 cut(s)	1190
AgsI	TTSAA	5 cut(s)	31, 56, 700, 952, 1270
AhlI	ACTAGT	1 cut(s)	1534
AjnI	CCWGG	2 cut(s)	422, 1046
AleI	CACNNNNGTG	1 cut(s)	851
Alw21I	GWGCWC	6 cut(s)	44, 523, 651, 858, 1170, 1332
Alw26I	GTCTC	2 cut(s)	818, 950
Alw44I	GTGCAC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	189
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	7 cut(s)	318, 426, 537, 579, 601, 1044, 1096
ApaI	GGGCCC	1 cut(s)	430
ApaLI	GTGCAC	1 cut(s)	40
ApeKI	GCWGC	4 cut(s)	198, 201, 248, 349
ApoI	RAATTY	3 cut(s)	410, 756, 1235
ArsI	GACNNNNNNTTYG	2 cut(s)	1145, 1177
AsiGI	ACCGGT	1 cut(s)	1190
AspLEI	GCGC	3 cut(s)	189, 1000, 1092
AspS9I	GGNCC	5 cut(s)	426, 427, 537, 1153, 1304
AsuC2I	CCSGG	2 cut(s)	779, 1150
AsuHPI	GGTGA	3 cut(s)	258, 316, 838
AsuII	TTCGAA	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	1153, 1304
AxyI	CCTNAGG	1 cut(s)	1557
BaeGI	GKGCMC	2 cut(s)	44, 430
BanI	GGYRCC	1 cut(s)	1248
BanII	GRGCYC	3 cut(s)	430, 1170, 1344
BarI	GAAGNNNNNNTAC	2 cut(s)	1447, 1479
BbsI	GAAGAC	2 cut(s)	667, 1258
Bbv12I	GWGCWC	6 cut(s)	44, 523, 651, 858, 1170, 1332
BbvCI	CCTCAGC	2 cut(s)	253, 259
BbvI	GCAGC	4 cut(s)	210, 213, 260, 361
BccI	CCATC	2 cut(s)	1239, 1478
BceAI	ACGGC	2 cut(s)	616, 730
BciT130I	CCWGG	2 cut(s)	424, 1048
BclI	TGATCA	2 cut(s)	1057, 1495
BcnI	CCSGG	2 cut(s)	779, 1150
BcoDI	GTCTC	2 cut(s)	818, 950
BcuI	ACTAGT	1 cut(s)	1534
BfaI	CTAG	1 cut(s)	1535
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	8 cut(s)	102, 199, 202, 241, 249, 350, 622, 871
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	8 cut(s)	103, 200, 203, 242, 250, 351, 623, 872
Bme1390I	CCNGG	4 cut(s)	424, 779, 1048, 1150
Bme18I	GGWCC	2 cut(s)	1153, 1304
BmgT120I	GGNCC	5 cut(s)	426, 427, 537, 1153, 1304
BmiI	GGNNCC	3 cut(s)	428, 1154, 1250
BmrFI	CCNGG	4 cut(s)	424, 779, 1048, 1150
BmsI	GCATC	3 cut(s)	151, 784, 1422
BpiI	GAAGAC	2 cut(s)	667, 1258
BpmI	CTGGAG	1 cut(s)	251
Bpu10I	CCTNAGC	2 cut(s)	253, 259
Bpu1102I	GCTNAGC	1 cut(s)	645
Bpu14I	TTCGAA	1 cut(s)	505
BpuMI	CCSGG	2 cut(s)	779, 1150
Bsa29I	ATCGAT	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	950
BsaJI	CCNNGG	9 cut(s)	64, 423, 598, 778, 849, 1047, 1093, 1149, 1418
BsaWI	WCCGGW	2 cut(s)	268, 1190
BsaXI	ACNNNNNCTCC	2 cut(s)	1059, 1089
Bsc4I	CCNNNNNNNGG	2 cut(s)	396, 564
Bse118I	RCCGGY	3 cut(s)	581, 941, 1190
Bse21I	CCTNAGG	1 cut(s)	1557
BseBI	CCWGG	2 cut(s)	424, 1048
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	9 cut(s)	64, 423, 598, 778, 849, 1047, 1093, 1149, 1418
BseGI	GGATG	3 cut(s)	157, 191, 595
BseLI	CCNNNNNNNGG	2 cut(s)	396, 564
BseMII	CTCAG	6 cut(s)	267, 273, 497, 636, 1526, 1571
BseRI	GAGGAG	2 cut(s)	471, 1545
BseSI	GKGCMC	2 cut(s)	44, 430
BseXI	GCAGC	4 cut(s)	210, 213, 260, 361
Bsh1236I	CGCG	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	754
BshFI	GGCC	7 cut(s)	320, 428, 539, 581, 603, 1046, 1098
BshNI	GGYRCC	1 cut(s)	1248
BshTI	ACCGGT	1 cut(s)	1190
BshVI	ATCGAT	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	754
BsiHKAI	GWGCWC	6 cut(s)	44, 523, 651, 858, 1170, 1332
BsiSI	CCGG	6 cut(s)	269, 582, 778, 942, 1149, 1191
BslFI	GGGAC	4 cut(s)	620, 723, 770, 1166
BslI	CCNNNNNNNGG	2 cut(s)	396, 564
BsmAI	GTCTC	2 cut(s)	818, 950
BsmFI	GGGAC	4 cut(s)	620, 723, 770, 1166
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	7 cut(s)	320, 428, 539, 581, 603, 1046, 1098
Bso31I	GGTCTC	1 cut(s)	950
Bsp119I	TTCGAA	1 cut(s)	505
Bsp120I	GGGCCC	1 cut(s)	426
Bsp1286I	GDGCHC	8 cut(s)	44, 430, 523, 651, 858, 1170, 1332, 1344
Bsp143I	GATC	6 cut(s)	181, 384, 432, 1057, 1309, 1495
Bsp1720I	GCTNAGC	1 cut(s)	645
Bsp19I	CCATGG	2 cut(s)	64, 1093
BspANI	GGCC	7 cut(s)	320, 428, 539, 581, 603, 1046, 1098
BspCNI	CTCAG	6 cut(s)	266, 272, 496, 637, 1525, 1570
BspDI	ATCGAT	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	295
BspHI	TCATGA	3 cut(s)	498, 523, 969
BspLI	GGNNCC	3 cut(s)	428, 1154, 1250
BspMAI	CTGCAG	1 cut(s)	200
BspPI	GGATC	1 cut(s)	189
BspT104I	TTCGAA	1 cut(s)	505
BspT107I	GGYRCC	1 cut(s)	1248
BspTNI	GGTCTC	1 cut(s)	950
BsrBI	CCGCTC	3 cut(s)	101, 450, 1609
BsrFI	RCCGGY	3 cut(s)	581, 941, 1190
BssAI	RCCGGY	3 cut(s)	581, 941, 1190
BssECI	CCNNGG	9 cut(s)	64, 423, 598, 778, 849, 1047, 1093, 1149, 1418
BssMI	GATC	6 cut(s)	181, 384, 432, 1057, 1309, 1495
BssNI	GRCGYC	1 cut(s)	783
BssT1I	CCWWGG	4 cut(s)	64, 849, 1093, 1418
Bst2UI	CCWGG	2 cut(s)	424, 1048
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	2 cut(s)	953, 1422
BstACI	GRCGYC	1 cut(s)	783
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	3 cut(s)	583, 1253, 1518
BstDEI	CTNAG	7 cut(s)	253, 259, 483, 645, 903, 1512, 1557
BstDSI	CCRYGG	3 cut(s)	64, 598, 1093
BstF5I	GGATG	3 cut(s)	157, 191, 595
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	3 cut(s)	189, 1000, 1092
BstKTI	GATC	6 cut(s)	184, 387, 435, 1060, 1312, 1498
BstMAI	GTCTC	2 cut(s)	818, 950
BstMBI	GATC	6 cut(s)	181, 384, 432, 1057, 1309, 1495
BstMCI	CGRYCG	1 cut(s)	754
BstMWI	GCNNNNNNNGC	3 cut(s)	195, 254, 578
BstNI	CCWGG	2 cut(s)	424, 1048
BstNSI	RCATGY	2 cut(s)	674, 1087
BstSCI	CCNGG	4 cut(s)	422, 777, 1046, 1148
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	2 cut(s)	44, 430
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	4 cut(s)	210, 213, 260, 361
BstV2I	GAAGAC	2 cut(s)	667, 1258
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
Bsu15I	ATCGAT	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	1557
BsuRI	GGCC	7 cut(s)	320, 428, 539, 581, 603, 1046, 1098
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	3 cut(s)	64, 598, 1093
BtsCI	GGATG	3 cut(s)	157, 191, 595
BtsI	GCAGTG	2 cut(s)	242, 417
BtsIMutI	CAGTG	2 cut(s)	242, 417
Cac8I	GCNNGC	3 cut(s)	583, 1253, 1518
CaiI	CAGNNNCTG	1 cut(s)	490
CciI	TCATGA	3 cut(s)	498, 523, 969
CfoI	GCGC	3 cut(s)	189, 1000, 1092
Cfr10I	RCCGGY	3 cut(s)	581, 941, 1190
Cfr13I	GGNCC	5 cut(s)	426, 427, 537, 1153, 1304
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	1 cut(s)	772
Csp6I	GTAC	1 cut(s)	1509
CspAI	ACCGGT	1 cut(s)	1190
CviQI	GTAC	1 cut(s)	1509
DdeI	CTNAG	7 cut(s)	253, 259, 483, 645, 903, 1512, 1557
DpnI	GATC	6 cut(s)	183, 386, 434, 1059, 1311, 1497
DpnII	GATC	6 cut(s)	181, 384, 432, 1057, 1309, 1495
Eam1104I	CTCTTC	2 cut(s)	953, 1422
EarI	CTCTTC	2 cut(s)	953, 1422
EciI	GGCGGA	2 cut(s)	601, 857
Ecl136II	GAGCTC	1 cut(s)	1168
Eco130I	CCWWGG	4 cut(s)	64, 849, 1093, 1418
Eco24I	GRGCYC	3 cut(s)	430, 1170, 1344
Eco31I	GGTCTC	1 cut(s)	950
Eco47I	GGWCC	2 cut(s)	1153, 1304
Eco53kI	GAGCTC	1 cut(s)	1168
Eco57I	CTGAAG	3 cut(s)	239, 660, 1421
Eco81I	CCTNAGG	1 cut(s)	1557
EcoICRI	GAGCTC	1 cut(s)	1168
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	422, 1046
EcoT14I	CCWWGG	4 cut(s)	64, 849, 1093, 1418
EcoT38I	GRGCYC	3 cut(s)	430, 1170, 1344
ErhI	CCWWGG	4 cut(s)	64, 849, 1093, 1418
FalI	AAGNNNNNCTT	2 cut(s)	1419, 1451
FaqI	GGGAC	4 cut(s)	620, 723, 770, 1166
FauI	CCCGC	3 cut(s)	197, 749, 1602
FbaI	TGATCA	2 cut(s)	1057, 1495
Fnu4HI	GCNGC	8 cut(s)	102, 199, 202, 241, 249, 350, 622, 871
FokI	GGATG	3 cut(s)	164, 178, 602
FriOI	GRGCYC	3 cut(s)	430, 1170, 1344
Fsp4HI	GCNGC	8 cut(s)	102, 199, 202, 241, 249, 350, 622, 871
FspBI	CTAG	1 cut(s)	1535
GlaI	GCGC	3 cut(s)	188, 999, 1091
GluI	GCNGC	8 cut(s)	102, 199, 202, 241, 249, 350, 622, 871
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	7 cut(s)	320, 428, 539, 581, 603, 1046, 1098
HapII	CCGG	6 cut(s)	269, 582, 778, 942, 1149, 1191
HgaI	GACGC	1 cut(s)	772
HhaI	GCGC	3 cut(s)	189, 1000, 1092
Hin1I	GRCGYC	1 cut(s)	783
Hin6I	GCGC	3 cut(s)	187, 998, 1090
HinP1I	GCGC	3 cut(s)	187, 998, 1090
HinfI	GANTC	9 cut(s)	93, 286, 314, 487, 502, 1033, 1228, 1279, 1299
HpaII	CCGG	6 cut(s)	269, 582, 778, 942, 1149, 1191
HphI	GGTGA	3 cut(s)	258, 316, 838
Hpy166II	GTNNAC	2 cut(s)	42, 910
Hpy188I	TCNGA	6 cut(s)	92, 98, 486, 1116, 1233, 1284
Hpy188III	TCNNGA	7 cut(s)	499, 524, 970, 1030, 1270, 1307, 1559
Hpy8I	GTNNAC	2 cut(s)	42, 910
Hpy99I	CGWCG	1 cut(s)	1578
HpyAV	CCTTC	4 cut(s)	331, 337, 614, 1138
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	5 cut(s)	42, 198, 663, 982, 1041
HpyF10VI	GCNNNNNNNGC	3 cut(s)	195, 254, 578
HpyF3I	CTNAG	7 cut(s)	253, 259, 483, 645, 903, 1512, 1557
Hsp92I	GRCGYC	1 cut(s)	783
HspAI	GCGC	3 cut(s)	187, 998, 1090
KroI	GCCGGC	1 cut(s)	581
KroNI	GCCGGC	1 cut(s)	583
Ksp22I	TGATCA	2 cut(s)	1057, 1495
Kzo9I	GATC	6 cut(s)	181, 384, 432, 1057, 1309, 1495
LmnI	GCTCC	7 cut(s)	98, 128, 214, 232, 271, 447, 1627
Lsp1109I	GCAGC	4 cut(s)	210, 213, 260, 361
LweI	GCATC	3 cut(s)	151, 784, 1422
MaeI	CTAG	1 cut(s)	1535
MaeIII	GTNAC	4 cut(s)	70, 475, 492, 1009
MalI	GATC	6 cut(s)	183, 386, 434, 1059, 1311, 1497
MbiI	CCGCTC	3 cut(s)	101, 450, 1609
MboI	GATC	6 cut(s)	181, 384, 432, 1057, 1309, 1495
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	8 cut(s)	44, 430, 523, 651, 858, 1170, 1332, 1344
MluCI	AATT	6 cut(s)	410, 756, 1053, 1110, 1235, 1468
MlyI	GAGTC	5 cut(s)	102, 481, 1027, 1288, 1308
MmeI	TCCRAC	3 cut(s)	76, 1130, 1341
MroNI	GCCGGC	1 cut(s)	581
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	3 cut(s)	47, 170, 851
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	6 cut(s)	269, 582, 778, 942, 1149, 1191
MspR9I	CCNGG	4 cut(s)	424, 779, 1048, 1150
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	424, 1048
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	3 cut(s)	195, 254, 578
NaeI	GCCGGC	1 cut(s)	583
NciI	CCSGG	2 cut(s)	779, 1150
NcoI	CCATGG	2 cut(s)	64, 1093
NdeII	GATC	6 cut(s)	181, 384, 432, 1057, 1309, 1495
NgoMIV	GCCGGC	1 cut(s)	581
NlaIV	GGNNCC	3 cut(s)	428, 1154, 1250
NmuCI	GTSAC	3 cut(s)	70, 475, 1009
NspI	RCATGY	2 cut(s)	674, 1087
NspV	TTCGAA	1 cut(s)	505
OliI	CACNNNNGTG	1 cut(s)	851
PagI	TCATGA	3 cut(s)	498, 523, 969
PciI	ACATGT	2 cut(s)	670, 1083
PctI	GAATGC	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	583
PfeI	GAWTC	4 cut(s)	286, 314, 502, 1228
PinAI	ACCGGT	1 cut(s)	1190
PkrI	GCNGC	8 cut(s)	103, 200, 203, 242, 250, 351, 623, 872
PleI	GAGTC	5 cut(s)	101, 481, 1027, 1287, 1307
PpsI	GAGTC	5 cut(s)	101, 481, 1027, 1287, 1307
PscI	ACATGT	2 cut(s)	670, 1083
PsiI	TTATAA	1 cut(s)	1017
Psp124BI	GAGCTC	1 cut(s)	1170
Psp6I	CCWGG	2 cut(s)	422, 1046
PspGI	CCWGG	2 cut(s)	422, 1046
PspN4I	GGNNCC	3 cut(s)	428, 1154, 1250
PspOMI	GGGCCC	1 cut(s)	426
PspPI	GGNCC	5 cut(s)	426, 427, 537, 1153, 1304
PstI	CTGCAG	1 cut(s)	200
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	1 cut(s)	181
RsaI	GTAC	1 cut(s)	1510
RsaNI	GTAC	1 cut(s)	1509
RseI	CAYNNNNRTG	3 cut(s)	47, 170, 851
SacI	GAGCTC	1 cut(s)	1170
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	8 cut(s)	102, 199, 202, 241, 249, 350, 622, 871
Sau3AI	GATC	6 cut(s)	181, 384, 432, 1057, 1309, 1495
Sau96I	GGNCC	5 cut(s)	426, 427, 537, 1153, 1304
SchI	GAGTC	5 cut(s)	102, 481, 1027, 1288, 1308
ScrFI	CCNGG	4 cut(s)	424, 779, 1048, 1150
SduI	GDGCHC	8 cut(s)	44, 430, 523, 651, 858, 1170, 1332, 1344
SfaNI	GCATC	3 cut(s)	151, 784, 1422
SfcI	CTRYAG	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	505
SinI	GGWCC	2 cut(s)	1153, 1304
SmiMI	CAYNNNNRTG	3 cut(s)	47, 170, 851
SpeI	ACTAGT	1 cut(s)	1534
Sse9I	AATT	6 cut(s)	410, 756, 1053, 1110, 1235, 1468
SspI	AATATT	1 cut(s)	1379
SspMI	CTAG	1 cut(s)	1535
SstI	GAGCTC	1 cut(s)	1170
StyD4I	CCNGG	4 cut(s)	422, 777, 1046, 1148
StyI	CCWWGG	4 cut(s)	64, 849, 1093, 1418
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	5 cut(s)	380, 414, 435, 505, 1243
TaqII	GACCGA	2 cut(s)	768, 1292
TasI	AATT	6 cut(s)	410, 756, 1053, 1110, 1235, 1468
TatI	WGTACW	1 cut(s)	1508
TauI	GCSGC	4 cut(s)	104, 243, 624, 873
TfiI	GAWTC	4 cut(s)	286, 314, 502, 1228
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	2 cut(s)	242, 424
TseFI	GTSAC	3 cut(s)	70, 475, 1009
TseI	GCWGC	4 cut(s)	198, 201, 248, 349
Tsp45I	GTSAC	3 cut(s)	70, 475, 1009
TspDTI	ATGAA	7 cut(s)	453, 798, 890, 899, 986, 1196, 1406
TspGWI	ACGGA	3 cut(s)	352, 1124, 1562
TspRI	CASTG	2 cut(s)	242, 424
VneI	GTGCAC	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	1153, 1304
XapI	RAATTY	3 cut(s)	410, 756, 1235
XceI	RCATGY	2 cut(s)	674, 1087
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1481
XspI	CTAG	1 cut(s)	1535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.