Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0009369

Physical Location & Seq

Genomic Coordinates Forward (+)

157514 .. 161529

Gene Structure 4016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1000700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1800 bp

ATGAGAAAAATGGCGAGAATTACATCACTGTACTCGAATTTGCTACGTCAAGGCACGCATAGCCATGTCTCTGTCGTGTCCATTGCTGCTGCCTTTGCCCTGAAGCAATCCCCTGCTGCTGCTGTATCAGCACCTCCAACGCATTTCTTTACTCCCGTCCTCCTTTGGTCTTCTTCTTCGACTAGCTCACACTCCAAGTCTCCAAACTCAGCTGATGACAATTCCACAGCAGAAGAATCACATGCCAATGTTGCTGTTGCTGACGACGACGACAAGGACGACGACGACGACGACGAAGATGATGATGATACTGAGTTGGGAGTCTCGGATTCGGGTCTTTCTCGAGATGTGAAAAGCATTGTCGACATCTTAAGTTTACGGAGCGAGTCGCTGGGCTCTGAGATGAAGAGGAAGCTCGATCAATGCGGCATAGCAGCCTCGTCAGAGCTGGTGGCAGCGGTTCTTTCACGCGTTCGCAATGATTGGGAATCGGCATTCACCTTCTTCCTCTGGGCCGGAAAGCAGCAGCCGGGTTACGCTCACACTGTGCGGGAATACCATTCCATGATCTCCATTCTAGGGAAAATGAGAAAGTTTGACACTGCCTGGGCCTTGATTGATGAGATGACAGGTCATTCTCTCGTCACTCCTCACACTCTCTTGATCATGATCAGGAGGTACTCTTGCGTTCATGATGTTGGCAAGGCTATCAATACTTTCTATGCTTATAAACGCTTTCACTTTGTGGCTGCCATGGATGACTTCCATGGCCTTCTCTCTGCCCTTTGCCGCTACAAAAATGTCCAAGAAGCTGAGCACTTGCTCTTCTGCAACAGAAACACCTTCCCCTTTAACACCAAGAGCTTTAACATTATCCTCAATGGTTGGTGCAATATCATCGTCAGTCCCCGTGAGGCCGAGAGAATTTGGATGGAGATGACCAACAGAGGTGTTGTGCACGATGCTGTCTCCTACTCATGTCTCATGTCTTGCTATTCAAAAGCCTCTAACCTTAACAGGGTGCTCAAGCTCTTCGATCGGATGAAGGCAATGAAGATTGAGCCCGATAGGAAAGTTTACAATGCGCTAATTTATGCTCTTGGAAAAGGCAGACTTGTGAATGAGGCTATCAATCTAGTGAAAAAAATGCAAGATAAAGGCCTTACTCCCAATGTTGTCACTTTTAACTCCATCATCAAGCCTCTCTGCAAGGCCAGGAAAATTGATGAGGCTAGACGCGTACTTGATGACATGTTGCACCAAGGCCTTCTTCCCACAATTCAGACGTACCATGCTTTCTTCCGTATTTTAAGGACTGGTGAGCAAGTGTTTGAGCTCTTGGAGAAGATGAAAAGTTTGGGTTGCCACCCAAATACTGATACCTACATAATGTTGATTCGAAAATTTTGTCGATGGCGCCAGCTTGATCACGTGTTCAAGTTGTGGAGTGAAATGAGTGAGAATGGAGTAAATCCTGATCGTAGCTCATATATTGTGCTGATACATGGGCTATTTTTTAATGGCAAGTTGGAGGAAGCCTACAAATATTATATAGAGATGAAAAAGAAACAGTATTTGCCAGAACCAAGGACAGAAGAGATGCTTCAGTCATGGTTGTCTGGTAAGCAGATTTCCACATTCCATACGACAGATAAAGAAGATGATCAATTGGACTGGAGTCACCTGGACATGAACGCTAGAGTAACCCCCAAGAAATCTCATCAGGAAAAGGATTTCCTTCGGCAGCCGGAAGCTAGGAAAGTTGTAAGAGAGCGGGGCTTTTCTTTCTGGGAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

600

Amino Acids

68.66

Weight (kDa)

7.95

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	285 - 334	2e-06	PPR repeat family
PPR_3	PF13812	308 - 369	2e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	308 - 436	3.2e-11	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	313 - 413	4.6e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	321 - 368	1.5e-09	PPR repeat family
PPR_2	PF13041	359 - 404	2.5e-11	PPR repeat family
PPR_3	PF13812	379 - 432	7.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	386 - 418	3.6e-11	PPR repeat
PPR_2	PF13041	390 - 435	2.8e-11	PPR repeat family
PPR_2	PF13041	441 - 471	1.7e-06	PPR repeat family
PPR_2	PF13041	465 - 504	1e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009369)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15010
fragaria_vesca	FvH4_1g14610 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380 FvH4_6g48380
malus_domestica	MD12G1000700.v1.1
prunus_persica	Prupe.7G001100_v2.0.a1 Prupe.7G001100_v2.0.a1 Prupe.7G001100_v2.0.a1
pyrus_communis	pycom12g00060
rosa_chinensis	RchiOBHm_Chr3g0497531
rosa_laevigata	RLG00000022455
rosa_multiflora	Rmu_sc0000093.1_g000015
rosa_roxburghii	Rroxscaffold_6G00387950
rosa_rugosa	Rorug03G0293400
rosa_samantha	Rh3AG337300 Rh3BG375700 Rh3CG371700 Rh3DG372200
rosa_wichuraiana	Rw0G018510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	729
AccB1I	GGYRCC	1 cut(s)	1416
AccBSI	CCGCTC	1 cut(s)	1774
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	2 cut(s)	471, 1239
AciI	CCGC	5 cut(s)	426, 458, 550, 790, 1774
AcsI	RAATTY	3 cut(s)	37, 924, 1403
AcuI	CTGAAG	2 cut(s)	122, 1589
AcvI	CACGTG	1 cut(s)	1432
AcyI	GRCGYC	1 cut(s)	1417
AdeI	CACNNNGTG	2 cut(s)	547, 745
AfaI	GTAC	4 cut(s)	32, 680, 1242, 1289
AfiI	CCNNNNNNNGG	2 cut(s)	579, 1018
AflII	CTTAAG	1 cut(s)	370
AflIII	ACRYGT	4 cut(s)	469, 1237, 1251, 1431
AgsI	TTSAA	2 cut(s)	999, 1438
AjnI	CCWGG	3 cut(s)	605, 1214, 1683
AjuI	GAANNNNNNNTTGG	2 cut(s)	1254, 1286
Alw21I	GWGCWC	4 cut(s)	819, 960, 1026, 1338
Alw26I	GTCTC	5 cut(s)	73, 204, 328, 973, 986
Alw44I	GTGCAC	1 cut(s)	956
Ama87I	CYCGRG	1 cut(s)	342
AoxI	GGCC	7 cut(s)	513, 609, 769, 915, 1159, 1212, 1264
ApaLI	GTGCAC	1 cut(s)	956
ApoI	RAATTY	3 cut(s)	37, 924, 1403
ArsI	GACNNNNNNTTYG	2 cut(s)	1393, 1425
AspLEI	GCGC	2 cut(s)	1087, 1419
AspS9I	GGNCC	2 cut(s)	513, 609
AsuC2I	CCSGG	1 cut(s)	531
AsuHPI	GGTGA	3 cut(s)	490, 1331, 1673
AsuII	TTCGAA	1 cut(s)	1399
AvaI	CYCGRG	1 cut(s)	342
BaeGI	GKGCMC	1 cut(s)	960
BanI	GGYRCC	1 cut(s)	1416
BanII	GRGCYC	3 cut(s)	398, 1065, 1338
BbrPI	CACGTG	1 cut(s)	1432
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	4 cut(s)	819, 960, 1026, 1338
BccI	CCATC	3 cut(s)	925, 1199, 1407
BcgI	CGANNNNNNTGC	2 cut(s)	880, 914
BciT130I	CCWGG	3 cut(s)	607, 1216, 1685
BclI	TGATCA	4 cut(s)	663, 669, 1426, 1663
BcnI	CCSGG	1 cut(s)	531
BcoDI	GTCTC	5 cut(s)	73, 204, 328, 973, 986
BfaI	CTAG	6 cut(s)	183, 578, 1136, 1233, 1698, 1755
BfoI	RGCGCY	1 cut(s)	1420
BfrI	CTTAAG	1 cut(s)	370
BlpI	GCTNAGC	1 cut(s)	813
Bme1390I	CCNGG	4 cut(s)	531, 607, 1216, 1685
BmeT110I	CYCGRG	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	513, 609
BmiI	GGNNCC	2 cut(s)	1418, 1794
BmrFI	CCNGG	4 cut(s)	531, 607, 1216, 1685
BmsI	GCATC	2 cut(s)	952, 1590
BoxI	GACNNNNGTC	1 cut(s)	1677
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	1696
Bpu1102I	GCTNAGC	1 cut(s)	813
Bpu14I	TTCGAA	1 cut(s)	1399
BpuEI	CTTGAG	1 cut(s)	1010
BpuMI	CCSGG	1 cut(s)	531
BsaAI	YACGTR	1 cut(s)	1432
BsaBI	GATNNNNATC	1 cut(s)	668
BsaHI	GRCGYC	1 cut(s)	1417
BsaJI	CCNNGG	5 cut(s)	606, 753, 766, 1261, 1586
Bsc4I	CCNNNNNNNGG	2 cut(s)	579, 1018
Bse1I	ACTGG	2 cut(s)	1321, 1679
Bse3DI	GCAATG	3 cut(s)	81, 484, 1056
Bse8I	GATNNNNATC	1 cut(s)	668
BseBI	CCWGG	3 cut(s)	607, 1216, 1685
BseDI	CCNNGG	5 cut(s)	606, 753, 766, 1261, 1586
BseGI	GGATG	3 cut(s)	763, 936, 1047
BseJI	GATNNNNATC	1 cut(s)	668
BseLI	CCNNNNNNNGG	2 cut(s)	579, 1018
BseMI	GCAATG	3 cut(s)	81, 484, 1056
BseMII	CTCAG	4 cut(s)	222, 303, 390, 804
BseNI	ACTGG	2 cut(s)	1321, 1679
BseRI	GAGGAG	1 cut(s)	639
BseSI	GKGCMC	1 cut(s)	960
BseYI	CCCAGC	1 cut(s)	391
Bsh1236I	CGCG	2 cut(s)	471, 1239
Bsh1285I	CGRYCG	1 cut(s)	1039
BshFI	GGCC	7 cut(s)	515, 611, 771, 917, 1161, 1214, 1266
BshNI	GGYRCC	1 cut(s)	1416
BsiEI	CGRYCG	1 cut(s)	1039
BsiHKAI	GWGCWC	4 cut(s)	819, 960, 1026, 1338
BsiHKCI	CYCGRG	1 cut(s)	342
BsiSI	CCGG	3 cut(s)	516, 530, 1748
BslFI	GGGAC	1 cut(s)	891
BslI	CCNNNNNNNGG	2 cut(s)	579, 1018
BsmAI	GTCTC	5 cut(s)	73, 204, 328, 973, 986
BsmFI	GGGAC	1 cut(s)	891
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	7 cut(s)	515, 611, 771, 917, 1161, 1214, 1266
BsoBI	CYCGRG	1 cut(s)	342
Bsp119I	TTCGAA	1 cut(s)	1399
Bsp1286I	GDGCHC	6 cut(s)	398, 819, 960, 1026, 1065, 1338
Bsp143I	GATC	8 cut(s)	418, 567, 663, 669, 1036, 1426, 1477, 1663
Bsp1720I	GCTNAGC	1 cut(s)	813
Bsp19I	CCATGG	2 cut(s)	753, 766
BspACI	CCGC	5 cut(s)	426, 458, 550, 790, 1774
BspANI	GGCC	7 cut(s)	515, 611, 771, 917, 1161, 1214, 1266
BspCNI	CTCAG	4 cut(s)	221, 304, 391, 805
BspFNI	CGCG	2 cut(s)	471, 1239
BspHI	TCATGA	2 cut(s)	666, 691
BspLI	GGNNCC	2 cut(s)	1418, 1794
BspQI	GCTCTTC	2 cut(s)	830, 1037
BspT104I	TTCGAA	1 cut(s)	1399
BspT107I	GGYRCC	1 cut(s)	1416
BspTI	CTTAAG	1 cut(s)	370
BsrBI	CCGCTC	1 cut(s)	1774
BsrDI	GCAATG	3 cut(s)	81, 484, 1056
BsrI	ACTGG	2 cut(s)	1321, 1679
BssECI	CCNNGG	5 cut(s)	606, 753, 766, 1261, 1586
BssMI	GATC	8 cut(s)	418, 567, 663, 669, 1036, 1426, 1477, 1663
BssNI	GRCGYC	1 cut(s)	1417
BssT1I	CCWWGG	4 cut(s)	753, 766, 1261, 1586
Bst2UI	CCWGG	3 cut(s)	607, 1216, 1685
Bst4CI	ACNGT	3 cut(s)	30, 547, 1572
Bst6I	CTCTTC	4 cut(s)	401, 830, 1037, 1590
BstACI	GRCGYC	1 cut(s)	1417
BstAFI	CTTAAG	1 cut(s)	370
BstBAI	YACGTR	1 cut(s)	1432
BstBI	TTCGAA	1 cut(s)	1399
BstC8I	GCNNGC	2 cut(s)	56, 1421
BstDEI	CTNAG	4 cut(s)	208, 312, 399, 813
BstDSI	CCRYGG	2 cut(s)	753, 766
BstF5I	GGATG	3 cut(s)	763, 936, 1047
BstFNI	CGCG	2 cut(s)	471, 1239
BstH2I	RGCGCY	1 cut(s)	1420
BstHHI	GCGC	2 cut(s)	1087, 1419
BstKTI	GATC	8 cut(s)	421, 570, 666, 672, 1039, 1429, 1480, 1666
BstMAI	GTCTC	5 cut(s)	73, 204, 328, 973, 986
BstMBI	GATC	8 cut(s)	418, 567, 663, 669, 1036, 1426, 1477, 1663
BstMCI	CGRYCG	1 cut(s)	1039
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 95, 128, 251
BstNI	CCWGG	3 cut(s)	607, 1216, 1685
BstNSI	RCATGY	2 cut(s)	245, 1255
BstPAI	GACNNNNGTC	1 cut(s)	1677
BstSCI	CCNGG	4 cut(s)	529, 605, 1214, 1683
BstSLI	GKGCMC	1 cut(s)	960
BstUI	CGCG	2 cut(s)	471, 1239
BstV2I	GAAGAC	1 cut(s)	162
BsuRI	GGCC	7 cut(s)	515, 611, 771, 917, 1161, 1214, 1266
BtgI	CCRYGG	2 cut(s)	753, 766
BtsCI	GGATG	3 cut(s)	763, 936, 1047
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	3 cut(s)	26, 543, 600
Cac8I	GCNNGC	2 cut(s)	56, 1421
CciI	TCATGA	2 cut(s)	666, 691
CfoI	GCGC	2 cut(s)	1087, 1419
Cfr13I	GGNCC	2 cut(s)	513, 609
CseI	GACGC	1 cut(s)	1245
Csp6I	GTAC	4 cut(s)	31, 679, 1241, 1288
CviQI	GTAC	4 cut(s)	31, 679, 1241, 1288
DdeI	CTNAG	4 cut(s)	208, 312, 399, 813
DinI	GGCGCC	1 cut(s)	1418
DpnI	GATC	8 cut(s)	420, 569, 665, 671, 1038, 1428, 1479, 1665
DpnII	GATC	8 cut(s)	418, 567, 663, 669, 1036, 1426, 1477, 1663
DraIII	CACNNNGTG	2 cut(s)	547, 745
Eam1104I	CTCTTC	4 cut(s)	401, 830, 1037, 1590
EarI	CTCTTC	4 cut(s)	401, 830, 1037, 1590
Ecl136II	GAGCTC	1 cut(s)	1336
Eco130I	CCWWGG	4 cut(s)	753, 766, 1261, 1586
Eco147I	AGGCCT	2 cut(s)	1161, 1266
Eco24I	GRGCYC	3 cut(s)	398, 1065, 1338
Eco53kI	GAGCTC	1 cut(s)	1336
Eco57I	CTGAAG	2 cut(s)	122, 1589
Eco72I	CACGTG	1 cut(s)	1432
Eco88I	CYCGRG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	1336
EcoRII	CCWGG	3 cut(s)	605, 1214, 1683
EcoT14I	CCWWGG	4 cut(s)	753, 766, 1261, 1586
EcoT38I	GRGCYC	3 cut(s)	398, 1065, 1338
EgeI	GGCGCC	1 cut(s)	1418
EheI	GGCGCC	1 cut(s)	1418
ErhI	CCWWGG	4 cut(s)	753, 766, 1261, 1586
FalI	AAGNNNNNCTT	6 cut(s)	1098, 1130, 1254, 1286, 1587, 1619
FaqI	GGGAC	1 cut(s)	891
FauI	CCCGC	2 cut(s)	543, 1767
FbaI	TGATCA	4 cut(s)	663, 669, 1426, 1663
FblI	GTMKAC	1 cut(s)	363
FokI	GGATG	3 cut(s)	770, 943, 1054
FriOI	GRGCYC	3 cut(s)	398, 1065, 1338
FspBI	CTAG	6 cut(s)	183, 578, 1136, 1233, 1698, 1755
GlaI	GCGC	2 cut(s)	1086, 1418
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	1696
HaeII	RGCGCY	1 cut(s)	1420
HaeIII	GGCC	7 cut(s)	515, 611, 771, 917, 1161, 1214, 1266
HapII	CCGG	3 cut(s)	516, 530, 1748
HgaI	GACGC	1 cut(s)	1245
HhaI	GCGC	2 cut(s)	1087, 1419
Hin1I	GRCGYC	1 cut(s)	1417
Hin6I	GCGC	2 cut(s)	1085, 1417
HinP1I	GCGC	2 cut(s)	1085, 1417
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	7 cut(s)	236, 321, 329, 386, 488, 1396, 1678
HpaII	CCGG	3 cut(s)	516, 530, 1748
HphI	GGTGA	3 cut(s)	490, 1331, 1673
Hpy166II	GTNNAC	4 cut(s)	364, 377, 958, 1078
Hpy188I	TCNGA	5 cut(s)	328, 400, 445, 1041, 1284
Hpy188III	TCNNGA	8 cut(s)	342, 344, 661, 667, 673, 692, 1475, 1724
Hpy8I	GTNNAC	4 cut(s)	364, 377, 958, 1078
Hpy99I	CGWCG	7 cut(s)	269, 272, 284, 287, 290, 293, 296
HpyAV	CCTTC	6 cut(s)	511, 782, 853, 1039, 1277, 1748
HpyCH4III	ACNGT	3 cut(s)	30, 547, 1572
HpyCH4IV	ACGT	3 cut(s)	46, 1286, 1431
HpyCH4V	TGCA	6 cut(s)	831, 891, 958, 1150, 1209, 1258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 95, 128, 251
HpyF3I	CTNAG	4 cut(s)	208, 312, 399, 813
HpySE526I	ACGT	3 cut(s)	46, 1286, 1431
Hsp92I	GRCGYC	1 cut(s)	1417
HspAI	GCGC	2 cut(s)	1085, 1417
KasI	GGCGCC	1 cut(s)	1416
Ksp22I	TGATCA	4 cut(s)	663, 669, 1426, 1663
Kzo9I	GATC	8 cut(s)	418, 567, 663, 669, 1036, 1426, 1477, 1663
LguI	GCTCTTC	2 cut(s)	830, 1037
LmnI	GCTCC	2 cut(s)	381, 1792
LweI	GCATC	2 cut(s)	952, 1590
MaeI	CTAG	6 cut(s)	183, 578, 1136, 1233, 1698, 1755
MaeII	ACGT	3 cut(s)	46, 1286, 1431
MaeIII	GTNAC	5 cut(s)	533, 643, 1177, 1679, 1702
MalI	GATC	8 cut(s)	420, 569, 665, 671, 1038, 1428, 1479, 1665
MbiI	CCGCTC	1 cut(s)	1774
MboI	GATC	8 cut(s)	418, 567, 663, 669, 1036, 1426, 1477, 1663
MfeI	CAATTG	1 cut(s)	1667
MhlI	GDGCHC	6 cut(s)	398, 819, 960, 1026, 1065, 1338
MluCI	AATT	9 cut(s)	18, 37, 220, 924, 1089, 1221, 1278, 1403, 1667
MluI	ACGCGT	2 cut(s)	469, 1237
Mly113I	GGCGCC	1 cut(s)	1417
MlyI	GAGTC	3 cut(s)	330, 395, 1687
MmeI	TCCRAC	2 cut(s)	161, 1509
MseI	TTAA	7 cut(s)	371, 852, 867, 1014, 1185, 1310, 1518
MslI	CAYNNNNRTG	2 cut(s)	63, 246
MspA1I	CMGCKG	2 cut(s)	212, 458
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	3 cut(s)	516, 530, 1748
MspR9I	CCNGG	4 cut(s)	531, 607, 1216, 1685
MunI	CAATTG	1 cut(s)	1667
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	3 cut(s)	607, 1216, 1685
MvnI	CGCG	2 cut(s)	471, 1239
MwoI	GCNNNNNNNGC	4 cut(s)	60, 95, 128, 251
NarI	GGCGCC	1 cut(s)	1417
NciI	CCSGG	1 cut(s)	531
NcoI	CCATGG	2 cut(s)	753, 766
NdeII	GATC	8 cut(s)	418, 567, 663, 669, 1036, 1426, 1477, 1663
NlaIV	GGNNCC	2 cut(s)	1418, 1794
NmeAIII	GCCGAG	1 cut(s)	943
NmuCI	GTSAC	3 cut(s)	643, 1177, 1679
NspI	RCATGY	2 cut(s)	245, 1255
NspV	TTCGAA	1 cut(s)	1399
PaeR7I	CTCGAG	1 cut(s)	342
PagI	TCATGA	2 cut(s)	666, 691
PceI	AGGCCT	2 cut(s)	1161, 1266
PciI	ACATGT	1 cut(s)	1251
PciSI	GCTCTTC	2 cut(s)	830, 1037
PcsI	WCGNNNNNNNCGW	4 cut(s)	276, 285, 288, 291
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	4 cut(s)	236, 329, 488, 1396
Ple19I	CGATCG	1 cut(s)	1039
PleI	GAGTC	3 cut(s)	329, 394, 1686
PluTI	GGCGCC	1 cut(s)	1420
PmaCI	CACGTG	1 cut(s)	1432
PmlI	CACGTG	1 cut(s)	1432
PpsI	GAGTC	3 cut(s)	329, 394, 1686
Ppu21I	YACGTR	1 cut(s)	1432
PscI	ACATGT	1 cut(s)	1251
PshAI	GACNNNNGTC	1 cut(s)	1677
PsiI	TTATAA	1 cut(s)	729
Psp124BI	GAGCTC	1 cut(s)	1338
Psp6I	CCWGG	3 cut(s)	605, 1214, 1683
PspCI	CACGTG	1 cut(s)	1432
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	3 cut(s)	605, 1214, 1683
PspN4I	GGNNCC	2 cut(s)	1418, 1794
PspPI	GGNCC	2 cut(s)	513, 609
PvuI	CGATCG	1 cut(s)	1039
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	4 cut(s)	32, 680, 1242, 1289
RsaNI	GTAC	4 cut(s)	31, 679, 1241, 1288
RseI	CAYNNNNRTG	2 cut(s)	63, 246
SacI	GAGCTC	1 cut(s)	1338
SalI	GTCGAC	1 cut(s)	362
SapI	GCTCTTC	2 cut(s)	830, 1037
SaqAI	TTAA	7 cut(s)	371, 852, 867, 1014, 1185, 1310, 1518
Sau3AI	GATC	8 cut(s)	418, 567, 663, 669, 1036, 1426, 1477, 1663
Sau96I	GGNCC	2 cut(s)	513, 609
SchI	GAGTC	3 cut(s)	330, 395, 1687
ScrFI	CCNGG	4 cut(s)	531, 607, 1216, 1685
SduI	GDGCHC	6 cut(s)	398, 819, 960, 1026, 1065, 1338
SfaNI	GCATC	2 cut(s)	952, 1590
SfoI	GGCGCC	1 cut(s)	1418
Sfr274I	CTCGAG	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	1399
SlaI	CTCGAG	1 cut(s)	342
SmiMI	CAYNNNNRTG	2 cut(s)	63, 246
SmlI	CTYRAG	3 cut(s)	342, 370, 1025
SmoI	CTYRAG	3 cut(s)	342, 370, 1025
Sse9I	AATT	9 cut(s)	18, 37, 220, 924, 1089, 1221, 1278, 1403, 1667
SseBI	AGGCCT	2 cut(s)	1161, 1266
SsiI	CCGC	5 cut(s)	426, 458, 550, 790, 1774
SspDI	GGCGCC	1 cut(s)	1416
SspI	AATATT	1 cut(s)	1547
SspMI	CTAG	6 cut(s)	183, 578, 1136, 1233, 1698, 1755
SstI	GAGCTC	1 cut(s)	1338
StuI	AGGCCT	2 cut(s)	1161, 1266
StyD4I	CCNGG	4 cut(s)	529, 605, 1214, 1683
StyI	CCWWGG	4 cut(s)	753, 766, 1261, 1586
TaaI	ACNGT	3 cut(s)	30, 547, 1572
TaiI	ACGT	3 cut(s)	49, 1289, 1434
TaqI	TCGA	8 cut(s)	35, 179, 343, 363, 417, 1035, 1399, 1411
TasI	AATT	9 cut(s)	18, 37, 220, 924, 1089, 1221, 1278, 1403, 1667
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	2 cut(s)	429, 792
TfiI	GAWTC	4 cut(s)	236, 329, 488, 1396
Tru1I	TTAA	7 cut(s)	371, 852, 867, 1014, 1185, 1310, 1518
Tru9I	TTAA	7 cut(s)	371, 852, 867, 1014, 1185, 1310, 1518
TscAI	CASTG	3 cut(s)	33, 550, 607
TseFI	GTSAC	3 cut(s)	643, 1177, 1679
Tsp45I	GTSAC	3 cut(s)	643, 1177, 1679
TspDTI	ATGAA	7 cut(s)	419, 680, 1058, 1067, 1364, 1574, 1706
TspGWI	ACGGA	2 cut(s)	394, 1292
TspRI	CASTG	3 cut(s)	33, 550, 607
Vha464I	CTTAAG	1 cut(s)	370
VneI	GTGCAC	1 cut(s)	956
XapI	RAATTY	3 cut(s)	37, 924, 1403
XceI	RCATGY	2 cut(s)	245, 1255
XhoI	CTCGAG	1 cut(s)	342
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	6 cut(s)	183, 578, 1136, 1233, 1698, 1755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.