Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010469

Physical Location & Seq

Genomic Coordinates Forward (+)

4980374 .. 4982231

Gene Structure 1858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAAATTCGGCAAAGAGTTTCGTACTCACCTCGAAGAAACTTTACCAGAGTGGAGAGACAAGTTCCTTTGCTATAAACCTTTAAAAAAGCTTCTCAAATATTATCCTTATTACTCCGCCGATTTTGGACCCGCCAATTCCGATCACAACGATTCGCGTCCAGTATTTGCTGATACTACTAACATCTCTTCCGCCGCCGACGACGGCGGTGTGGTTCCCGGCGTCAGGCCATCGGAAGATCTCCAGGGTTCGTTTGTGAGGATACTTAACGATGAACTTGAGAAGTTTAACGATTTTTACGTTGATAAGGAAGAAGATTTCGTTATCAGATTACAGGAGCTCAAGGAAAGAATCGAGCAAGTTAAAGAAAAGAATGGGGAATTTGCATCAGAAAGTGAGTTCAGCGAAGAAATGATGGATATTCGGAGAGACCTTGTTACCATTCATGGCGAGATGGTGCTCCTGAAAAACTACAGCTCCCTTAATTTTGCAGGACTTGTCAAGATTTTGAAGAAGTACGATAAAAGAACAGGTGGACTTTTACGTTTGCCTTTCACACAGCTTGTTCTCCATCAACCCTTCTTTACTACAGAGCCACTTACTAGGTTAGTCCGTGAATGTGAGGCCAATCTTGAGCTTCTTTTTCCTTCAGAAGCGGAAGTTGTAGAGTCTTCTAGCGCAGTGCAAGCACACTCAAGCTCACATCAGCACAACTCCCCAAGAATCTCAGCTGAGACTTCCTCAACTCTCGGCAATGAAAATCTTGATATATATAAGAGTACACTCGCTGCAATGAGAGCTATAAGAGGGTTACAAAAGGCTAGCTCGACGTACAACCCTTTATCATTCTCATCGCTTCTTCAGAACGAGGATGATGAGACGGTAACAGCTGAAAACTCTCCAAACTCTGGGAACAAAGATGATTCAGAGAAGGAAGATACTGGACCTTCCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

318

Amino Acids

36.04

Weight (kDa)

4.98

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	70 - 106	4.9e-08	SPX domain
SPX	PF03105	132 - 196	1e-06	SPX domain
SPX	PF03105	210 - 247	1.1e-07	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15330 AT5G15330
fragaria_vesca	FvH4_6g48080
malus_domestica	MD09G1054300.v1.1 MD17G1052000.v1.1 MD17G1052100.v1.1
prunus_persica	Prupe.3G264200_v2.0.a1 Prupe.3G264200_v2.0.a1
pyrus_communis	pycom111g04560 pycom17g04910 pycom17g04920
rosa_chinensis	RchiOBHm_Chr2g0167401
rosa_laevigata	RLG00000021714
rosa_multiflora	Rmu_sc0001840.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083540
rosa_rugosa	Rorug02G0530200
rosa_samantha	Rh2AG597100 Rh2BG608500 Rh2CG579300 Rh2DG619700
rosa_wichuraiana	Rw2G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	908
AccII	CGCG	1 cut(s)	157
AciI	CCGC	6 cut(s)	117, 132, 192, 195, 207, 656
AcsI	RAATTY	2 cut(s)	5, 380
AcuI	CTGAAG	2 cut(s)	633, 845
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	4 cut(s)	25, 518, 781, 833
AfiI	CCNNNNNNNGG	2 cut(s)	225, 908
AgsI	TTSAA	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	243
Alw21I	GWGCWC	2 cut(s)	342, 462
Alw26I	GTCTC	4 cut(s)	51, 423, 728, 872
AoxI	GGCC	2 cut(s)	227, 624
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	2 cut(s)	5, 380
AspLEI	GCGC	1 cut(s)	680
AspS9I	GGNCC	2 cut(s)	128, 944
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	20
AsuNHI	GCTAGC	1 cut(s)	821
AvaII	GGWCC	2 cut(s)	128, 944
BanII	GRGCYC	1 cut(s)	342
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	2 cut(s)	342, 462
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	4 cut(s)	238, 409, 448, 579
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	4 cut(s)	51, 423, 728, 872
BfaI	CTAG	3 cut(s)	603, 675, 822
BfmI	CTRYAG	2 cut(s)	472, 588
BfuI	GTATCC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	2 cut(s)	195, 789
BlsI	GCNGC	2 cut(s)	196, 790
Bme1390I	CCNGG	2 cut(s)	219, 245
Bme18I	GGWCC	2 cut(s)	128, 944
BmgT120I	GGNCC	2 cut(s)	128, 944
BmiI	GGNNCC	2 cut(s)	130, 216
BmrFI	CCNGG	2 cut(s)	219, 245
BmsI	GCATC	1 cut(s)	395
BmtI	GCTAGC	1 cut(s)	825
BpiI	GAAGAC	1 cut(s)	663
BplI	GAGNNNNNCTC	2 cut(s)	725, 757
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	4 cut(s)	299, 326, 653, 679
BpuMI	CCSGG	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	244
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 908
Bse1I	ACTGG	2 cut(s)	161, 946
Bse3DI	GCAATG	2 cut(s)	760, 798
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	877
BseLI	CCNNNNNNNGG	2 cut(s)	225, 908
BseMI	GCAATG	2 cut(s)	760, 798
BseMII	CTCAG	2 cut(s)	723, 741
BseNI	ACTGG	2 cut(s)	161, 946
BseXI	GCAGC	1 cut(s)	775
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	229, 626
BsiHKAI	GWGCWC	2 cut(s)	342, 462
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	225, 908
BsmAI	GTCTC	4 cut(s)	51, 423, 728, 872
BsmBI	CGTCTC	1 cut(s)	872
BsnI	GGCC	2 cut(s)	229, 626
Bso31I	GGTCTC	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	342, 462
Bsp143I	GATC	2 cut(s)	142, 238
BspACI	CCGC	6 cut(s)	117, 132, 192, 195, 207, 656
BspANI	GGCC	2 cut(s)	229, 626
BspCNI	CTCAG	2 cut(s)	724, 740
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	130, 216
BspOI	GCTAGC	1 cut(s)	825
BspTNI	GGTCTC	1 cut(s)	423
BsrDI	GCAATG	2 cut(s)	760, 798
BsrI	ACTGG	2 cut(s)	161, 946
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	2 cut(s)	142, 238
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	883
Bst6I	CTCTTC	1 cut(s)	193
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	687, 823
BstDEI	CTNAG	2 cut(s)	727, 732
BstF5I	GGATG	1 cut(s)	877
BstFNI	CGCG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	2 cut(s)	145, 241
BstMAI	GTCTC	4 cut(s)	51, 423, 728, 872
BstMBI	GATC	2 cut(s)	142, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 797
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	2 cut(s)	217, 243
BstSFI	CTRYAG	2 cut(s)	472, 588
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	229, 626
BtgZI	GCGATG	1 cut(s)	837
BtsCI	GGATG	1 cut(s)	877
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	2 cut(s)	687, 952
Cac8I	GCNNGC	2 cut(s)	687, 823
CfoI	GCGC	1 cut(s)	680
Cfr13I	GGNCC	2 cut(s)	128, 944
CseI	GACGC	2 cut(s)	146, 211
Csp6I	GTAC	4 cut(s)	24, 517, 780, 832
CviAII	CATG	1 cut(s)	446
CviQI	GTAC	4 cut(s)	24, 517, 780, 832
DdeI	CTNAG	2 cut(s)	727, 732
DpnI	GATC	2 cut(s)	144, 240
DpnII	GATC	2 cut(s)	142, 238
DraI	TTTAAA	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
EciI	GGCGGA	2 cut(s)	106, 181
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	128, 944
Eco53kI	GAGCTC	1 cut(s)	340
Eco57I	CTGAAG	2 cut(s)	633, 845
EcoICRI	GAGCTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	872
FaeI	CATG	1 cut(s)	449
FaiI	YATR	6 cut(s)	75, 447, 770, 772, 774, 803
FatI	CATG	1 cut(s)	445
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	195, 789
FokI	GGATG	1 cut(s)	884
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	2 cut(s)	195, 789
FspBI	CTAG	3 cut(s)	603, 675, 822
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	2 cut(s)	195, 789
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	229, 626
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	2 cut(s)	146, 211
HhaI	GCGC	1 cut(s)	680
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	449
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	5 cut(s)	152, 351, 668, 723, 923
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	536, 782
Hpy188I	TCNGA	8 cut(s)	142, 235, 329, 391, 426, 652, 864, 928
Hpy188III	TCNNGA	4 cut(s)	463, 502, 632, 764
Hpy8I	GTNNAC	2 cut(s)	536, 782
Hpy99I	CGWCG	3 cut(s)	203, 206, 832
HpyAV	CCTTC	4 cut(s)	589, 657, 925, 957
HpyCH4III	ACNGT	1 cut(s)	883
HpyCH4IV	ACGT	3 cut(s)	300, 544, 830
HpyCH4V	TGCA	4 cut(s)	386, 491, 685, 791
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 797
HpyF3I	CTNAG	2 cut(s)	727, 732
HpySE526I	ACGT	3 cut(s)	300, 544, 830
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	449
HspAI	GCGC	1 cut(s)	678
Kzo9I	GATC	2 cut(s)	142, 238
LmnI	GCTCC	3 cut(s)	337, 465, 482
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	3 cut(s)	603, 675, 822
MaeII	ACGT	3 cut(s)	300, 544, 830
MaeIII	GTNAC	3 cut(s)	436, 810, 883
MalI	GATC	2 cut(s)	144, 240
MboI	GATC	2 cut(s)	142, 238
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	342, 462
MluCI	AATT	4 cut(s)	5, 136, 380, 484
MlyI	GAGTC	1 cut(s)	677
MnlI	CCTC	6 cut(s)	41, 252, 616, 751, 800, 862
MseI	TTAA	5 cut(s)	83, 267, 288, 363, 483
MspA1I	CMGCKG	2 cut(s)	731, 890
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	219, 245
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	686, 797
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	2 cut(s)	142, 238
NheI	GCTAGC	1 cut(s)	821
NlaIII	CATG	1 cut(s)	449
NlaIV	GGNNCC	2 cut(s)	130, 216
NmeAIII	GCCGAG	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	4 cut(s)	152, 351, 723, 923
PflMI	CCANNNNNTGG	1 cut(s)	908
PkrI	GCNGC	2 cut(s)	196, 790
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	130, 216
PspPI	GGNCC	2 cut(s)	128, 944
PsuI	RGATCY	1 cut(s)	238
PvuII	CAGCTG	2 cut(s)	731, 890
RsaI	GTAC	4 cut(s)	25, 518, 781, 833
RsaNI	GTAC	4 cut(s)	24, 517, 780, 832
SacI	GAGCTC	1 cut(s)	342
SaqAI	TTAA	5 cut(s)	83, 267, 288, 363, 483
SatI	GCNGC	2 cut(s)	195, 789
Sau3AI	GATC	2 cut(s)	142, 238
Sau96I	GGNCC	2 cut(s)	128, 944
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	2 cut(s)	219, 245
SduI	GDGCHC	2 cut(s)	342, 462
SfaNI	GCATC	1 cut(s)	395
SfcI	CTRYAG	2 cut(s)	472, 588
SinI	GGWCC	2 cut(s)	128, 944
SmlI	CTYRAG	4 cut(s)	278, 341, 632, 694
SmoI	CTYRAG	4 cut(s)	278, 341, 632, 694
Sse9I	AATT	4 cut(s)	5, 136, 380, 484
SsiI	CCGC	6 cut(s)	117, 132, 192, 195, 207, 656
SspI	AATATT	1 cut(s)	101
SspMI	CTAG	3 cut(s)	603, 675, 822
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	217, 243
TaaI	ACNGT	1 cut(s)	883
TaiI	ACGT	3 cut(s)	303, 547, 833
TaqI	TCGA	3 cut(s)	33, 354, 827
TasI	AATT	4 cut(s)	5, 136, 380, 484
TatI	WGTACW	1 cut(s)	779
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	4 cut(s)	152, 351, 723, 923
Tru1I	TTAA	5 cut(s)	83, 267, 288, 363, 483
Tru9I	TTAA	5 cut(s)	83, 267, 288, 363, 483
TscAI	CASTG	1 cut(s)	687
TseI	GCWGC	1 cut(s)	788
TspDTI	ATGAA	4 cut(s)	17, 288, 434, 771
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	1 cut(s)	687
Van91I	CCANNNNNTGG	1 cut(s)	908
VpaK11BI	GGWCC	2 cut(s)	128, 944
XapI	RAATTY	2 cut(s)	5, 380
XspI	CTAG	3 cut(s)	603, 675, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.