Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0010469

Physical Location & Seq

Genomic Coordinates Forward (+)

2779566 .. 2781457

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAATTCGGGAAGAAGTTCAGGACCCACCTGGAGGAGACGCTCCCGGAGTGGAGGGACAAGTTCCTCTGCTACAATCTCCTGAAGAAGCTCCTCAAGGGCTTCCCTGCCACCGCGGCTGCCATAGCCGCGGTGGATTCCCTCCCTCGCCAACTCGAGCTTCAGCGGCAGCCGGCAGATGCCCATCCGGCCGCTGCTGATGGAGGTGATGGTGGGTTCCACCCTTTGGCCGGACTCCAGGATTGGTTCGTTGCGATTCTGAATGAGGAGCTGGAGAAGTTAAACGATTTCTATGTGGATAAGGAGGAGGAGTTCGTTATCCGTTTCCAGGAACTGAAAGGAAGAATCGAGAGCGTCAAGGAAAGGAGCAGCAGGGGTGGAGTATTTACATCAGAGAGCGAGTTCAGTGAAGAAATGATGGACATCCGAGGAGTGTTACGTTTACGTTTCACGCAACTAGCCGTACACCAGCCTTTCTTTACAACAGAGCCTCTCACGAGGCTAGTCCGTGAATGTGAGGCAAATCTCGAGCTTCTCTTCCCTTTGGAAGCAGAAATCATTGAAGGTACACCAACCACACAAGATGAAACCACCCCAGACAGAGGTCACTCAAACCCACAATCCAATGATTCGGCAAATATTGCATCTGAGACACCTTCAAACATGGAGGCAAACACAGATATATATCGTGGAACTGTTGCTGCAATCAAAGCCATTCAAGGCCTTCAAAAACCAAGCTCCACTTCCAGCCCATGGTCCCTTTCAAATCACTTTAGAAGCCAGGACGAGGAGAGCACCGGTGCTGTCACAGCCGAAAATTCTACTTCAAACTCTGTAGGCAGCTGGCAGAGCGAAGGGGAGGATGACCAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

292

Amino Acids

32.45

Weight (kDa)

4.75

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15330 AT5G15330
fragaria_vesca	FvH4_6g48080
malus_domestica	MD09G1054300.v1.1 MD17G1052000.v1.1 MD17G1052100.v1.1
prunus_persica	Prupe.3G264200_v2.0.a1 Prupe.3G264200_v2.0.a1
pyrus_communis	pycom111g04560 pycom17g04910 pycom17g04920
rosa_chinensis	RchiOBHm_Chr2g0167401
rosa_laevigata	RLG00000021714
rosa_multiflora	Rmu_sc0001840.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083540
rosa_rugosa	Rorug02G0530200
rosa_samantha	Rh2AG597100 Rh2BG608500 Rh2CG579300 Rh2DG619700
rosa_wichuraiana	Rw2G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	226, 753
AccII	CGCG	2 cut(s)	116, 131
AciI	CCGC	6 cut(s)	114, 116, 129, 131, 166, 192
AcoI	YGGCCR	2 cut(s)	189, 228
AcsI	RAATTY	2 cut(s)	5, 817
AcuI	CTGAAG	2 cut(s)	104, 146
AfaI	GTAC	2 cut(s)	465, 568
AfiI	CCNNNNNNNGG	7 cut(s)	34, 226, 230, 328, 602, 753, 787
AgeI	ACCGGT	1 cut(s)	797
AgsI	TTSAA	6 cut(s)	563, 660, 719, 728, 765, 828
AjnI	CCWGG	4 cut(s)	30, 237, 327, 780
AjuI	GAANNNNNNNTTGG	4 cut(s)	144, 176, 727, 759
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	6 cut(s)	91, 160, 271, 532, 738, 843
AluI	AGCT	6 cut(s)	91, 160, 271, 532, 738, 843
Alw21I	GWGCWC	1 cut(s)	797
Alw26I	GTCTC	2 cut(s)	32, 644
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	2 cut(s)	155, 527
AoxI	GGCC	3 cut(s)	189, 228, 721
ApeKI	GCWGC	6 cut(s)	119, 169, 194, 369, 701, 840
ApoI	RAATTY	2 cut(s)	5, 817
AsiGI	ACCGGT	1 cut(s)	797
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	24, 756
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	2 cut(s)	155, 527
AvaII	GGWCC	2 cut(s)	24, 756
BauI	CACGAG	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	797
BbvI	GCAGC	6 cut(s)	106, 181, 181, 381, 688, 852
BccI	CCATC	4 cut(s)	192, 194, 203, 412
BceAI	ACGGC	1 cut(s)	446
BciT130I	CCWGG	4 cut(s)	32, 239, 329, 782
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	32, 644
BfaI	CTAG	2 cut(s)	458, 503
BfmI	CTRYAG	1 cut(s)	834
BglI	GCCNNNNNGGC	2 cut(s)	116, 188
Bme1390I	CCNGG	5 cut(s)	32, 47, 239, 329, 782
Bme18I	GGWCC	2 cut(s)	24, 756
BmeT110I	CYCGRG	2 cut(s)	155, 527
BmgT120I	GGNCC	2 cut(s)	24, 756
BmiI	GGNNCC	3 cut(s)	26, 218, 758
BmrFI	CCNGG	5 cut(s)	32, 47, 239, 329, 782
BmsI	GCATC	2 cut(s)	169, 653
BoxI	GACNNNNGTC	1 cut(s)	603
BpmI	CTGGAG	3 cut(s)	53, 221, 293
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	3 cut(s)	183, 422, 684
BsaJI	CCNNGG	4 cut(s)	114, 129, 427, 752
BsaWI	WCCGGW	1 cut(s)	797
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	7 cut(s)	34, 226, 230, 328, 602, 753, 787
Bse118I	RCCGGY	2 cut(s)	172, 797
Bse1I	ACTGG	1 cut(s)	868
Bse8I	GATNNNNATC	3 cut(s)	183, 422, 684
BseBI	CCWGG	4 cut(s)	32, 239, 329, 782
BseDI	CCNNGG	4 cut(s)	114, 129, 427, 752
BseGI	GGATG	3 cut(s)	184, 423, 868
BseJI	GATNNNNATC	3 cut(s)	183, 422, 684
BseLI	CCNNNNNNNGG	7 cut(s)	34, 226, 230, 328, 602, 753, 787
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	1 cut(s)	868
BseRI	GAGGAG	7 cut(s)	50, 83, 281, 320, 323, 444, 803
BseX3I	CGGCCG	1 cut(s)	189
BseXI	GCAGC	6 cut(s)	106, 181, 181, 381, 688, 852
Bsh1236I	CGCG	2 cut(s)	116, 131
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	3 cut(s)	191, 230, 723
BshTI	ACCGGT	1 cut(s)	797
BsiEI	CGRYCG	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	797
BsiHKCI	CYCGRG	2 cut(s)	155, 527
BsiSI	CCGG	5 cut(s)	47, 173, 188, 231, 798
BslFI	GGGAC	2 cut(s)	71, 742
BslI	CCNNNNNNNGG	7 cut(s)	34, 226, 230, 328, 602, 753, 787
BsmAI	GTCTC	2 cut(s)	32, 644
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	71, 742
BsnI	GGCC	3 cut(s)	191, 230, 723
BsoBI	CYCGRG	2 cut(s)	155, 527
Bsp1286I	GDGCHC	1 cut(s)	797
Bsp19I	CCATGG	1 cut(s)	752
BspACI	CCGC	6 cut(s)	114, 116, 129, 131, 166, 192
BspANI	GGCC	3 cut(s)	191, 230, 723
BspCNI	CTCAG	1 cut(s)	640
BspFNI	CGCG	2 cut(s)	116, 131
BspLI	GGNNCC	3 cut(s)	26, 218, 758
BsrFI	RCCGGY	2 cut(s)	172, 797
BsrI	ACTGG	1 cut(s)	868
BssAI	RCCGGY	2 cut(s)	172, 797
BssECI	CCNNGG	4 cut(s)	114, 129, 427, 752
BssSI	CACGAG	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	752
Bst2BI	CACGAG	1 cut(s)	496
Bst2UI	CCWGG	4 cut(s)	32, 239, 329, 782
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	174, 845
BstDEI	CTNAG	1 cut(s)	648
BstDSI	CCRYGG	3 cut(s)	114, 129, 752
BstF5I	GGATG	3 cut(s)	184, 423, 868
BstFNI	CGCG	2 cut(s)	116, 131
BstMAI	GTCTC	2 cut(s)	32, 644
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	9 cut(s)	116, 125, 128, 166, 188, 641, 710, 809, 849
BstNI	CCWGG	4 cut(s)	32, 239, 329, 782
BstPAI	GACNNNNGTC	1 cut(s)	603
BstSCI	CCNGG	5 cut(s)	30, 45, 237, 327, 780
BstSFI	CTRYAG	1 cut(s)	834
BstUI	CGCG	2 cut(s)	116, 131
BstV1I	GCAGC	6 cut(s)	106, 181, 181, 381, 688, 852
BstZI	CGGCCG	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	191, 230, 723
BtgI	CCRYGG	3 cut(s)	114, 129, 752
BtsCI	GGATG	3 cut(s)	184, 423, 868
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	174, 845
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr10I	RCCGGY	2 cut(s)	172, 797
Cfr13I	GGNCC	2 cut(s)	24, 756
Cfr42I	CCGCGG	2 cut(s)	117, 132
CseI	GACGC	2 cut(s)	49, 343
Csp6I	GTAC	2 cut(s)	464, 567
CspAI	ACCGGT	1 cut(s)	797
CviAII	CATG	2 cut(s)	664, 753
CviQI	GTAC	2 cut(s)	464, 567
DdeI	CTNAG	1 cut(s)	648
EaeI	YGGCCR	2 cut(s)	189, 228
EagI	CGGCCG	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	542
EarI	CTCTTC	1 cut(s)	542
EclXI	CGGCCG	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	752
Eco147I	AGGCCT	1 cut(s)	723
Eco47I	GGWCC	2 cut(s)	24, 756
Eco52I	CGGCCG	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	104, 146
Eco88I	CYCGRG	2 cut(s)	155, 527
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	4 cut(s)	30, 237, 327, 780
EcoT14I	CCWWGG	1 cut(s)	752
ErhI	CCWWGG	1 cut(s)	752
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	2 cut(s)	667, 756
FaiI	YATR	6 cut(s)	125, 294, 665, 683, 685, 754
FalI	AAGNNNNNCTT	2 cut(s)	727, 759
FaqI	GGGAC	2 cut(s)	71, 742
FatI	CATG	2 cut(s)	663, 752
FokI	GGATG	2 cut(s)	171, 410
FspBI	CTAG	2 cut(s)	458, 503
GsuI	CTGGAG	3 cut(s)	53, 221, 293
HaeIII	GGCC	3 cut(s)	191, 230, 723
HapII	CCGG	5 cut(s)	47, 173, 188, 231, 798
HgaI	GACGC	2 cut(s)	49, 343
Hin1II	CATG	2 cut(s)	667, 756
HinfI	GANTC	5 cut(s)	137, 234, 256, 345, 629
HpaII	CCGG	5 cut(s)	47, 173, 188, 231, 798
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	443, 466, 569
Hpy188I	TCNGA	4 cut(s)	261, 394, 428, 649
Hpy188III	TCNNGA	6 cut(s)	10, 22, 82, 349, 496, 527
Hpy8I	GTNNAC	3 cut(s)	443, 466, 569
HpyAV	CCTTC	4 cut(s)	557, 666, 734, 848
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4IV	ACGT	2 cut(s)	439, 445
HpyCH4V	TGCA	2 cut(s)	644, 704
HpyF10VI	GCNNNNNNNGC	9 cut(s)	116, 125, 128, 166, 188, 641, 710, 809, 849
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	2 cut(s)	439, 445
Hsp92II	CATG	2 cut(s)	667, 756
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
KspI	CCGCGG	2 cut(s)	117, 132
LmnI	GCTCC	5 cut(s)	48, 96, 268, 366, 743
Lsp1109I	GCAGC	6 cut(s)	106, 181, 181, 381, 688, 852
LweI	GCATC	2 cut(s)	169, 653
MaeI	CTAG	2 cut(s)	458, 503
MaeII	ACGT	2 cut(s)	439, 445
MaeIII	GTNAC	3 cut(s)	435, 605, 805
MboII	GAAGA	5 cut(s)	25, 97, 354, 422, 529
MhlI	GDGCHC	1 cut(s)	797
MluCI	AATT	2 cut(s)	5, 817
MlyI	GAGTC	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	5 cut(s)	116, 131, 166, 194, 843
MspI	CCGG	5 cut(s)	47, 173, 188, 231, 798
MspR9I	CCNGG	5 cut(s)	32, 47, 239, 329, 782
MvaI	CCWGG	4 cut(s)	32, 239, 329, 782
MvnI	CGCG	2 cut(s)	116, 131
MwoI	GCNNNNNNNGC	9 cut(s)	116, 125, 128, 166, 188, 641, 710, 809, 849
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	752
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	667, 756
NlaIV	GGNNCC	3 cut(s)	26, 218, 758
NmuCI	GTSAC	2 cut(s)	605, 805
PaeR7I	CTCGAG	2 cut(s)	155, 527
PceI	AGGCCT	1 cut(s)	723
PdiI	GCCGGC	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	4 cut(s)	137, 256, 345, 629
PflMI	CCANNNNNTGG	2 cut(s)	226, 753
PfoI	TCCNGGA	3 cut(s)	45, 237, 327
PinAI	ACCGGT	1 cut(s)	797
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PpuMI	RGGWCCY	1 cut(s)	24
PshAI	GACNNNNGTC	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	4 cut(s)	30, 237, 327, 780
PspGI	CCWGG	4 cut(s)	30, 237, 327, 780
PspN4I	GGNNCC	3 cut(s)	26, 218, 758
PspPI	GGNCC	2 cut(s)	24, 756
PspPPI	RGGWCCY	1 cut(s)	24
PspXI	VCTCGAGB	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	843
RsaI	GTAC	2 cut(s)	465, 568
RsaNI	GTAC	2 cut(s)	464, 567
SacII	CCGCGG	2 cut(s)	117, 132
SaqAI	TTAA	1 cut(s)	281
Sau96I	GGNCC	2 cut(s)	24, 756
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	5 cut(s)	32, 47, 239, 329, 782
SduI	GDGCHC	1 cut(s)	797
SfaNI	GCATC	2 cut(s)	169, 653
SfcI	CTRYAG	1 cut(s)	834
Sfr274I	CTCGAG	2 cut(s)	155, 527
Sfr303I	CCGCGG	2 cut(s)	117, 132
SgrAI	CRCCGGYG	1 cut(s)	797
SgrBI	CCGCGG	2 cut(s)	117, 132
SinI	GGWCC	2 cut(s)	24, 756
SlaI	CTCGAG	2 cut(s)	155, 527
SmlI	CTYRAG	3 cut(s)	95, 155, 527
SmoI	CTYRAG	3 cut(s)	95, 155, 527
Sse9I	AATT	2 cut(s)	5, 817
SseBI	AGGCCT	1 cut(s)	723
SsiI	CCGC	6 cut(s)	114, 116, 129, 131, 166, 192
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	2 cut(s)	458, 503
StuI	AGGCCT	1 cut(s)	723
StyD4I	CCNGG	5 cut(s)	30, 45, 237, 327, 780
StyI	CCWWGG	1 cut(s)	752
TaaI	ACNGT	1 cut(s)	697
TaiI	ACGT	2 cut(s)	442, 448
TaqI	TCGA	3 cut(s)	156, 348, 528
TasI	AATT	2 cut(s)	5, 817
TauI	GCSGC	4 cut(s)	119, 131, 169, 194
TfiI	GAWTC	4 cut(s)	137, 256, 345, 629
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	2 cut(s)	605, 805
TseI	GCWGC	6 cut(s)	119, 169, 194, 369, 701, 840
Tsp45I	GTSAC	2 cut(s)	605, 805
TspDTI	ATGAA	2 cut(s)	17, 600
TspGWI	ACGGA	2 cut(s)	311, 497
TspRI	CASTG	1 cut(s)	412
Van91I	CCANNNNNTGG	2 cut(s)	226, 753
VpaK11BI	GGWCC	2 cut(s)	24, 756
XapI	RAATTY	2 cut(s)	5, 817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XhoI	CTCGAG	2 cut(s)	155, 527
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	458, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.