Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010469

Physical Location & Seq

Genomic Coordinates Reverse (-)

24861260 .. 24864016

Gene Structure 2757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G264200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAGTTTGGGAAAGAGTTCAGGACCCACTTGGAGGAGACCCTCCCAGAGTGGAGAGACAAGTTCCTCTGTTACAAGCTTCTGAAGAAGCTCCTCAAGCGCTTACCCGCTGCCACCGCCATCGCTGCCGTCGATTCTCTCCCTTCCCATCTCAACTTTCGGCAACAGCCATCAGATGCCGACGCTGCGGCCGCTGGTGATGGTGGCCGCGGCTTCCGTCCTTTTGCTGGGCTACAGGATTGGTTCGTTGGGATTCTCAATGAGGAGGTTGAGAAGTTGAACGATTTCTACGTTGATACGGAGGAAGATTTCGTCATTCGTTTCCAGGAACTGAAAGGAAGAATCGAGCAAGTTAAGGAAAAGAGCAGCAGGGGTGGAGCTTTTACATCAGAGAGTTCATTCAGTGAAGAAGTGATGGACATTCGTAAGGACTTTGTCACCATTCATGGGGAGATGGTGCTTCTCACAAATTATAGCTCGTTGAATTTTGCAGGGATCGTCAAAATTCTAAAGAAGTATGATAAACGAACCGGAGGATTGTTGCGTCTACCTTTCACACAACTTGCCCTTCGCCAGCCTTTCTTTATAACAGAACCTCTCACAAGACTAGTCCGTGAATGCGAGGCAAATCTGGAGCTCCTCTTCCCATTGGAAGCAGAAGTCATTGAAGCTACCCCACCCCCACCAGATGAAACTTCCCCAGACAGAGGTCATTCAAACCCAGAATTCAATAATTCGGCAAATATTGCATCTGAGACACCCTCAAACCAGGAGGCAAACATGGATATTTACCGTGGAACCCTTGCTGCAATGAGGGCCATTCGAGGCCTTCGGAAGGCAAGCTCCACTTCCAATCCATGGTCGCTTTCAAATCACTATAGAAGCCAGGATGATGAGAGCACTGGTGCTGTTACAGCTGAGAACTCTACTTCAAATTCTGCAGCAAGCTTGCACAGCGAAGAGGAGGCTGATCCAGAGGATGACCCGTCTACATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

333

Amino Acids

37.2

Weight (kDa)

4.99

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15330 AT5G15330
fragaria_vesca	FvH4_6g48080
malus_domestica	MD09G1054300.v1.1 MD17G1052000.v1.1 MD17G1052100.v1.1
prunus_persica	Prupe.3G264200_v2.0.a1 Prupe.3G264200_v2.0.a1
pyrus_communis	pycom111g04560 pycom17g04910 pycom17g04920
rosa_chinensis	RchiOBHm_Chr2g0167401
rosa_laevigata	RLG00000021714
rosa_multiflora	Rmu_sc0001840.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083540
rosa_rugosa	Rorug02G0530200
rosa_samantha	Rh2AG597100 Rh2BG608500 Rh2CG579300 Rh2DG619700
rosa_wichuraiana	Rw2G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	858
AccI	GTMKAC	2 cut(s)	547, 989
AccII	CGCG	1 cut(s)	210
AciI	CCGC	6 cut(s)	108, 117, 188, 192, 208, 210
AclWI	GGATC	2 cut(s)	503, 965
AcoI	YGGCCR	2 cut(s)	189, 205
AcsI	RAATTY	4 cut(s)	484, 504, 725, 934
AcuI	CTGAAG	1 cut(s)	104
AfeI	AGCGCT	1 cut(s)	101
AfiI	CCNNNNNNNGG	6 cut(s)	34, 227, 447, 707, 835, 858
AgsI	TTSAA	7 cut(s)	280, 484, 668, 717, 730, 870, 933
AhlI	ACTAGT	1 cut(s)	607
AjnI	CCWGG	3 cut(s)	324, 768, 885
AluBI	AGCT	9 cut(s)	79, 91, 380, 477, 637, 671, 843, 917, 948
AluI	AGCT	9 cut(s)	79, 91, 380, 477, 637, 671, 843, 917, 948
Alw21I	GWGCWC	2 cut(s)	639, 902
Alw26I	GTCTC	3 cut(s)	32, 51, 749
AlwI	GGATC	2 cut(s)	503, 965
AlwNI	CAGNNNCTG	1 cut(s)	331
Aor51HI	AGCGCT	1 cut(s)	101
AoxI	GGCC	4 cut(s)	189, 205, 816, 826
ApeKI	GCWGC	6 cut(s)	110, 125, 185, 366, 806, 941
ApoI	RAATTY	4 cut(s)	484, 504, 725, 934
Asp700I	GAANNNNTTC	2 cut(s)	17, 284
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	24, 816
AsuHPI	GGTGA	2 cut(s)	209, 430
AvaII	GGWCC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	639
Bbv12I	GWGCWC	2 cut(s)	639, 902
BbvI	GCAGC	6 cut(s)	97, 112, 172, 378, 793, 953
BccI	CCATC	6 cut(s)	128, 156, 178, 194, 409, 448
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	3 cut(s)	326, 770, 887
BcoDI	GTCTC	3 cut(s)	32, 51, 749
BcuI	ACTAGT	1 cut(s)	607
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	3 cut(s)	233, 877, 939
BfoI	RGCGCY	1 cut(s)	103
Bme1390I	CCNGG	3 cut(s)	326, 770, 887
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	24, 816
BmiI	GGNNCC	2 cut(s)	26, 799
BmrFI	CCNGG	3 cut(s)	326, 770, 887
BmsI	GCATC	2 cut(s)	166, 758
BoxI	GACNNNNGTC	1 cut(s)	708
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
BpmI	CTGGAG	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	3 cut(s)	208, 793, 857
BsaWI	WCCGGW	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 227, 447, 707, 835, 858
Bse1I	ACTGG	1 cut(s)	907
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	3 cut(s)	326, 770, 887
BseDI	CCNNGG	3 cut(s)	208, 793, 857
BseGI	GGATG	2 cut(s)	895, 985
BseLI	CCNNNNNNNGG	6 cut(s)	34, 227, 447, 707, 835, 858
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	2 cut(s)	744, 909
BseNI	ACTGG	1 cut(s)	907
BseRI	GAGGAG	5 cut(s)	50, 83, 278, 629, 977
BseX3I	CGGCCG	1 cut(s)	189
BseXI	GCAGC	6 cut(s)	97, 112, 172, 378, 793, 953
BseYI	CCCAGC	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	4 cut(s)	191, 207, 818, 828
BsiEI	CGRYCG	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	639, 902
BsiSI	CCGG	1 cut(s)	531
BslI	CCNNNNNNNGG	6 cut(s)	34, 227, 447, 707, 835, 858
BsmAI	GTCTC	3 cut(s)	32, 51, 749
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	4 cut(s)	191, 207, 818, 828
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	2 cut(s)	639, 902
Bsp143I	GATC	2 cut(s)	495, 970
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	6 cut(s)	108, 117, 188, 192, 208, 210
BspANI	GGCC	4 cut(s)	191, 207, 818, 828
BspCNI	CTCAG	2 cut(s)	745, 910
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	26, 799
BspMAI	CTGCAG	1 cut(s)	943
BspPI	GGATC	2 cut(s)	503, 965
BspTNI	GGTCTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	816
BsrI	ACTGG	1 cut(s)	907
BssECI	CCNNGG	3 cut(s)	208, 793, 857
BssMI	GATC	2 cut(s)	495, 970
BssT1I	CCWWGG	1 cut(s)	857
Bst2UI	CCWGG	3 cut(s)	326, 770, 887
Bst4CI	ACNGT	1 cut(s)	794
Bst6I	CTCTTC	2 cut(s)	647, 954
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstC8I	GCNNGC	4 cut(s)	575, 841, 946, 950
BstDEI	CTNAG	2 cut(s)	753, 918
BstDSI	CCRYGG	3 cut(s)	208, 793, 857
BstENI	CCTNNNNNAGG	1 cut(s)	833
BstF5I	GGATG	2 cut(s)	895, 985
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	498, 973
BstMAI	GTCTC	3 cut(s)	32, 51, 749
BstMBI	GATC	2 cut(s)	495, 970
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 116, 125, 185, 191, 746, 815, 914, 954
BstNI	CCWGG	3 cut(s)	326, 770, 887
BstPAI	GACNNNNGTC	1 cut(s)	708
BstSCI	CCNGG	3 cut(s)	324, 768, 885
BstSFI	CTRYAG	3 cut(s)	233, 877, 939
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	6 cut(s)	97, 112, 172, 378, 793, 953
BstZI	CGGCCG	1 cut(s)	189
BsuRI	GGCC	4 cut(s)	191, 207, 818, 828
BtgI	CCRYGG	3 cut(s)	208, 793, 857
BtgZI	GCGATG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	895, 985
BtsIMutI	CAGTG	2 cut(s)	409, 900
Cac8I	GCNNGC	4 cut(s)	575, 841, 946, 950
CaiI	CAGNNNCTG	1 cut(s)	331
CciNI	GCGGCCGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	24, 816
Cfr42I	CCGCGG	1 cut(s)	211
CseI	GACGC	2 cut(s)	191, 533
CviAII	CATG	4 cut(s)	446, 781, 858, 993
DdeI	CTNAG	2 cut(s)	753, 918
DpnI	GATC	2 cut(s)	497, 972
DpnII	GATC	2 cut(s)	495, 970
EaeI	YGGCCR	2 cut(s)	189, 205
EagI	CGGCCG	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	647, 954
EarI	CTCTTC	2 cut(s)	647, 954
Ecl136II	GAGCTC	1 cut(s)	637
EclXI	CGGCCG	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	857
Eco147I	AGGCCT	1 cut(s)	828
Eco24I	GRGCYC	1 cut(s)	639
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	24
Eco47III	AGCGCT	1 cut(s)	101
Eco52I	CGGCCG	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	637
EcoNI	CCTNNNNNAGG	1 cut(s)	833
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	725
EcoRII	CCWGG	3 cut(s)	324, 768, 885
EcoT14I	CCWWGG	1 cut(s)	857
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	857
FaeI	CATG	4 cut(s)	449, 784, 861, 996
FaiI	YATR	8 cut(s)	447, 474, 519, 587, 782, 859, 879, 994
FalI	AAGNNNNNCTT	2 cut(s)	832, 864
FatI	CATG	4 cut(s)	445, 780, 857, 992
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	2 cut(s)	547, 989
FokI	GGATG	2 cut(s)	902, 992
FriOI	GRGCYC	1 cut(s)	639
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	1 cut(s)	101
GsaI	CCCAGC	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	653
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	4 cut(s)	191, 207, 818, 828
HapII	CCGG	1 cut(s)	531
HgaI	GACGC	2 cut(s)	191, 533
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	449, 784, 861, 996
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HindIII	AAGCTT	2 cut(s)	77, 946
HinfI	GANTC	3 cut(s)	134, 253, 342
HpaII	CCGG	1 cut(s)	531
HphI	GGTGA	2 cut(s)	209, 430
Hpy166II	GTNNAC	2 cut(s)	548, 990
Hpy188I	TCNGA	5 cut(s)	84, 175, 391, 754, 834
Hpy188III	TCNNGA	3 cut(s)	22, 632, 974
Hpy8I	GTNNAC	2 cut(s)	548, 990
Hpy99I	CGWCG	2 cut(s)	134, 185
HpyAV	CCTTC	4 cut(s)	153, 578, 829, 839
HpyCH4III	ACNGT	1 cut(s)	794
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	5 cut(s)	491, 749, 809, 941, 952
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 116, 125, 185, 191, 746, 815, 914, 954
HpyF3I	CTNAG	2 cut(s)	753, 918
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	4 cut(s)	449, 784, 861, 996
HspAI	GCGC	1 cut(s)	100
KspI	CCGCGG	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	495, 970
LmnI	GCTCC	5 cut(s)	96, 377, 634, 642, 848
Lsp1109I	GCAGC	6 cut(s)	97, 112, 172, 378, 793, 953
LweI	GCATC	2 cut(s)	166, 758
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	3 cut(s)	71, 436, 910
MalI	GATC	2 cut(s)	497, 972
MboI	GATC	2 cut(s)	495, 970
MboII	GAAGA	6 cut(s)	97, 317, 351, 419, 634, 971
MhlI	GDGCHC	2 cut(s)	639, 902
MluCI	AATT	6 cut(s)	469, 484, 504, 725, 733, 934
MroXI	GAANNNNTTC	2 cut(s)	17, 284
MseI	TTAA	1 cut(s)	354
MspA1I	CMGCKG	4 cut(s)	110, 194, 210, 917
MspI	CCGG	1 cut(s)	531
MspR9I	CCNGG	3 cut(s)	326, 770, 887
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	3 cut(s)	326, 770, 887
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	9 cut(s)	97, 116, 125, 185, 191, 746, 815, 914, 954
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	2 cut(s)	495, 970
NlaIII	CATG	4 cut(s)	449, 784, 861, 996
NlaIV	GGNNCC	2 cut(s)	26, 799
NmuCI	GTSAC	1 cut(s)	436
NotI	GCGGCCGC	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 288
PctI	GAATGC	1 cut(s)	623
PdmI	GAANNNNTTC	2 cut(s)	17, 284
PfeI	GAWTC	3 cut(s)	134, 253, 342
PflFI	GACNNNGTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	858
PfoI	TCCNGGA	1 cut(s)	324
PpuMI	RGGWCCY	1 cut(s)	24
PshAI	GACNNNNGTC	1 cut(s)	708
PsiI	TTATAA	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	3 cut(s)	324, 768, 885
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	3 cut(s)	324, 768, 885
PspN4I	GGNNCC	2 cut(s)	26, 799
PspPI	GGNCC	2 cut(s)	24, 816
PspPPI	RGGWCCY	1 cut(s)	24
PsrI	GAACNNNNNNTAC	2 cut(s)	272, 304
PstI	CTGCAG	1 cut(s)	943
PstNI	CAGNNNCTG	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	917
SacI	GAGCTC	1 cut(s)	639
SacII	CCGCGG	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	2 cut(s)	495, 970
Sau96I	GGNCC	2 cut(s)	24, 816
ScrFI	CCNGG	3 cut(s)	326, 770, 887
SduI	GDGCHC	2 cut(s)	639, 902
SfaNI	GCATC	2 cut(s)	166, 758
SfcI	CTRYAG	3 cut(s)	233, 877, 939
Sfr303I	CCGCGG	1 cut(s)	211
SgrBI	CCGCGG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	607
Sse9I	AATT	6 cut(s)	469, 484, 504, 725, 733, 934
SseBI	AGGCCT	1 cut(s)	828
SsiI	CCGC	6 cut(s)	108, 117, 188, 192, 208, 210
SspI	AATATT	1 cut(s)	745
SspMI	CTAG	1 cut(s)	608
SstI	GAGCTC	1 cut(s)	639
StuI	AGGCCT	1 cut(s)	828
StyD4I	CCNGG	3 cut(s)	324, 768, 885
StyI	CCWWGG	1 cut(s)	857
TaaI	ACNGT	1 cut(s)	794
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	132, 345, 823
TasI	AATT	6 cut(s)	469, 484, 504, 725, 733, 934
TauI	GCSGC	4 cut(s)	191, 194, 210, 213
TfiI	GAWTC	3 cut(s)	134, 253, 342
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	409, 907
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	6 cut(s)	110, 125, 185, 366, 806, 941
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	4 cut(s)	17, 387, 434, 705
TspGWI	ACGGA	3 cut(s)	206, 314, 602
TspRI	CASTG	2 cut(s)	409, 907
Tth111I	GACNNNGTC	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	833
XapI	RAATTY	4 cut(s)	484, 504, 725, 934
XmiI	GTMKAC	2 cut(s)	547, 989
XmnI	GAANNNNTTC	2 cut(s)	17, 284
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.