Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010469

Physical Location & Seq

Genomic Coordinates Forward (+)

3612656 .. 3615230

Gene Structure 2575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1054300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAAATTCGGGAAGAAGTTCAGGACCCACCTGGAGGAGACGCTCCCGGAGTGGAGGGACAAGTTCCTCTGCTACAATCTCCTGAAGAAGCTCCTCAAGGGCTTCCCTGCCACCGCGGCTGCCATAGCCGCGGTGGATTCCCTCCCTCGCCAACTCGAGTTTCAGCGCCAGCCGGCAGATGCCCATCCGGCCGCTGCTGATGGAGGTGATGGTGGGTTCCACCCTTTGGCCGGACTCCAGGATTGGTTCGTTGCGATTCTGAATGAGGAGCTGGAGAAGTTAAACAATTTCTATGTGGATAAGGAGGAGGAGTTCGTTATCCGTTTCCAGGAACTGAAAGGAAGAATCGAGAGCGTCAATGAAAGGAGCAGCAGGGGTGGTGTATTTACATCAGAGAGCGAGTTCAGTGAAGAAGTGATGGACATCCGTAAGGACTTTGTCACCATCCACGGGGAGATGGTGCTTCTAAAAAATTATAGCTCGTTGAATTTTGCAGGGCTTGTCAAAATTCTAAAGAAGTACGATAAGCGAACTGGAGGAGTGTTGCGTGTACGTTTCACGCAACTAGCCGTACGCCAGCCTTTCTTTACAACAGAACCTCTCACGAGGCTAGTCCGTGAATGCGAGGCAAATCTCGAGCTTCTCTTCCCTTTGGAAGCGGAAATCATTGAAGGTACACCAACCACACAAGATGAAACCACCCCAGACACAGGTCACTCAAACCCACAATCCAATGCTTCGGCAAATATTGCATCTGAGACACCTTCAAACATGGAGGCAAACATGGAGGCAAACACGGATATATATCGTGGGACTGTTGCTGCAATCAAAGCCATTCAAGGCCTTCAAAACCCAAGCTCCACTTCCAGCCCATGGTCGCTTTCAAATCACTTAAGAAGCCAGGACGAGGAGAGCAGCGGTGCTGTCACAGCCGAAAATTCTACGTCAAACTCTGTAGGCAGCTGGCAGAGCGAAGAGGAGGATGACCAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

332

Amino Acids

36.91

Weight (kDa)

4.89

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 37	4.3e-08	SPX domain
SPX	PF03105	81 - 122	1.9e-06	SPX domain
SPX	PF03105	141 - 179	2.9e-08	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15330 AT5G15330
fragaria_vesca	FvH4_6g48080
malus_domestica	MD09G1054300.v1.1 MD17G1052000.v1.1 MD17G1052100.v1.1
prunus_persica	Prupe.3G264200_v2.0.a1 Prupe.3G264200_v2.0.a1
pyrus_communis	pycom111g04560 pycom17g04910 pycom17g04920
rosa_chinensis	RchiOBHm_Chr2g0167401
rosa_laevigata	RLG00000021714
rosa_multiflora	Rmu_sc0001840.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083540
rosa_rugosa	Rorug02G0530200
rosa_samantha	Rh2AG597100 Rh2BG608500 Rh2CG579300 Rh2DG619700
rosa_wichuraiana	Rw2G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	226, 873
AccII	CGCG	2 cut(s)	116, 131
AciI	CCGC	7 cut(s)	114, 116, 129, 131, 192, 659, 918
AcoI	YGGCCR	2 cut(s)	189, 228
AcsI	RAATTY	4 cut(s)	5, 487, 507, 937
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	4 cut(s)	521, 552, 573, 676
AfiI	CCNNNNNNNGG	8 cut(s)	34, 226, 230, 328, 450, 710, 873, 907
AflII	CTTAAG	1 cut(s)	892
AgsI	TTSAA	6 cut(s)	487, 671, 768, 839, 848, 885
AjnI	CCWGG	4 cut(s)	30, 237, 327, 900
AjuI	GAANNNNNNNTTGG	4 cut(s)	144, 176, 847, 879
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	6 cut(s)	91, 271, 480, 640, 858, 963
AluI	AGCT	6 cut(s)	91, 271, 480, 640, 858, 963
Alw26I	GTCTC	2 cut(s)	32, 752
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	2 cut(s)	155, 635
AoxI	GGCC	3 cut(s)	189, 228, 841
ApeKI	GCWGC	6 cut(s)	119, 194, 369, 821, 915, 960
ApoI	RAATTY	4 cut(s)	5, 487, 507, 937
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	218, 433
AvaI	CYCGRG	2 cut(s)	155, 635
AvaII	GGWCC	1 cut(s)	24
BauI	CACGAG	1 cut(s)	604
BbvI	GCAGC	6 cut(s)	106, 181, 381, 808, 927, 972
BccI	CCATC	6 cut(s)	192, 194, 203, 412, 451, 452
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	4 cut(s)	32, 239, 329, 902
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	32, 752
BfaI	CTAG	2 cut(s)	566, 611
BfmI	CTRYAG	1 cut(s)	954
BfoI	RGCGCY	1 cut(s)	169
BfrI	CTTAAG	1 cut(s)	892
BglI	GCCNNNNNGGC	2 cut(s)	116, 188
BisI	GCNGC	9 cut(s)	117, 120, 129, 192, 195, 370, 822, 916, 961
BlsI	GCNGC	9 cut(s)	118, 121, 130, 193, 196, 371, 823, 917, 962
Bme1390I	CCNGG	5 cut(s)	32, 47, 239, 329, 902
Bme18I	GGWCC	1 cut(s)	24
BmeT110I	CYCGRG	2 cut(s)	155, 635
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	26, 218
BmrFI	CCNGG	5 cut(s)	32, 47, 239, 329, 902
BmsI	GCATC	2 cut(s)	169, 761
BoxI	GACNNNNGTC	1 cut(s)	711
BpmI	CTGGAG	4 cut(s)	53, 221, 293, 555
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	3 cut(s)	183, 422, 804
BsaJI	CCNNGG	4 cut(s)	114, 129, 448, 872
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 842, 872
Bsc4I	CCNNNNNNNGG	8 cut(s)	34, 226, 230, 328, 450, 710, 873, 907
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	538, 988
Bse8I	GATNNNNATC	3 cut(s)	183, 422, 804
BseBI	CCWGG	4 cut(s)	32, 239, 329, 902
BseDI	CCNNGG	4 cut(s)	114, 129, 448, 872
BseGI	GGATG	4 cut(s)	184, 423, 444, 988
BseJI	GATNNNNATC	3 cut(s)	183, 422, 804
BseLI	CCNNNNNNNGG	8 cut(s)	34, 226, 230, 328, 450, 710, 873, 907
BseMII	CTCAG	1 cut(s)	747
BseNI	ACTGG	2 cut(s)	538, 988
BseRI	GAGGAG	8 cut(s)	50, 83, 281, 320, 323, 552, 923, 992
BseX3I	CGGCCG	1 cut(s)	189
BseXI	GCAGC	6 cut(s)	106, 181, 381, 808, 927, 972
Bsh1236I	CGCG	2 cut(s)	116, 131
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	3 cut(s)	191, 230, 843
BsiEI	CGRYCG	1 cut(s)	192
BsiHKCI	CYCGRG	2 cut(s)	155, 635
BsiSI	CCGG	4 cut(s)	47, 173, 188, 231
BsiWI	CGTACG	1 cut(s)	571
BslFI	GGGAC	2 cut(s)	71, 826
BslI	CCNNNNNNNGG	8 cut(s)	34, 226, 230, 328, 450, 710, 873, 907
BsmAI	GTCTC	2 cut(s)	32, 752
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	71, 826
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	3 cut(s)	191, 230, 843
BsoBI	CYCGRG	2 cut(s)	155, 635
Bsp19I	CCATGG	1 cut(s)	872
BspACI	CCGC	7 cut(s)	114, 116, 129, 131, 192, 659, 918
BspANI	GGCC	3 cut(s)	191, 230, 843
BspCNI	CTCAG	1 cut(s)	748
BspFNI	CGCG	2 cut(s)	116, 131
BspLI	GGNNCC	2 cut(s)	26, 218
BspTI	CTTAAG	1 cut(s)	892
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	2 cut(s)	538, 988
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	4 cut(s)	114, 129, 448, 872
BssSI	CACGAG	1 cut(s)	604
BssT1I	CCWWGG	1 cut(s)	872
Bst2BI	CACGAG	1 cut(s)	604
Bst2UI	CCWGG	4 cut(s)	32, 239, 329, 902
Bst4CI	ACNGT	1 cut(s)	817
Bst6I	CTCTTC	2 cut(s)	650, 969
BstAFI	CTTAAG	1 cut(s)	892
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstC8I	GCNNGC	4 cut(s)	170, 174, 578, 965
BstDEI	CTNAG	1 cut(s)	756
BstDSI	CCRYGG	4 cut(s)	114, 129, 448, 872
BstF5I	GGATG	4 cut(s)	184, 423, 444, 988
BstFNI	CGCG	2 cut(s)	116, 131
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstMAI	GTCTC	2 cut(s)	32, 752
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 125, 128, 188, 749, 830, 929, 969
BstNI	CCWGG	4 cut(s)	32, 239, 329, 902
BstPAI	GACNNNNGTC	1 cut(s)	711
BstSCI	CCNGG	5 cut(s)	30, 45, 237, 327, 900
BstSFI	CTRYAG	1 cut(s)	954
BstUI	CGCG	2 cut(s)	116, 131
BstV1I	GCAGC	6 cut(s)	106, 181, 381, 808, 927, 972
BstZI	CGGCCG	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	191, 230, 843
BtgI	CCRYGG	4 cut(s)	114, 129, 448, 872
BtsCI	GGATG	4 cut(s)	184, 423, 444, 988
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	4 cut(s)	170, 174, 578, 965
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	24
Cfr42I	CCGCGG	2 cut(s)	117, 132
CseI	GACGC	2 cut(s)	49, 343
Csp6I	GTAC	4 cut(s)	520, 551, 572, 675
CviAII	CATG	3 cut(s)	772, 784, 873
CviQI	GTAC	4 cut(s)	520, 551, 572, 675
DdeI	CTNAG	1 cut(s)	756
EaeI	YGGCCR	2 cut(s)	189, 228
EagI	CGGCCG	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	650, 969
EarI	CTCTTC	2 cut(s)	650, 969
EclXI	CGGCCG	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	872
Eco147I	AGGCCT	1 cut(s)	843
Eco47I	GGWCC	1 cut(s)	24
Eco52I	CGGCCG	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	155, 635
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	4 cut(s)	30, 237, 327, 900
EcoT14I	CCWWGG	1 cut(s)	872
ErhI	CCWWGG	1 cut(s)	872
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	3 cut(s)	775, 787, 876
FaiI	YATR	8 cut(s)	125, 294, 477, 773, 785, 803, 805, 874
FalI	AAGNNNNNCTT	2 cut(s)	847, 879
FaqI	GGGAC	2 cut(s)	71, 826
FatI	CATG	3 cut(s)	771, 783, 872
Fnu4HI	GCNGC	9 cut(s)	117, 120, 129, 192, 195, 370, 822, 916, 961
FokI	GGATG	3 cut(s)	171, 410, 431
Fsp4HI	GCNGC	9 cut(s)	117, 120, 129, 192, 195, 370, 822, 916, 961
FspBI	CTAG	2 cut(s)	566, 611
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	9 cut(s)	117, 120, 129, 192, 195, 370, 822, 916, 961
GsuI	CTGGAG	4 cut(s)	53, 221, 293, 555
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	191, 230, 843
HapII	CCGG	4 cut(s)	47, 173, 188, 231
HgaI	GACGC	2 cut(s)	49, 343
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	3 cut(s)	775, 787, 876
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	137, 234, 256, 345
HpaII	CCGG	4 cut(s)	47, 173, 188, 231
HphI	GGTGA	2 cut(s)	218, 433
Hpy166II	GTNNAC	2 cut(s)	551, 677
Hpy188I	TCNGA	3 cut(s)	261, 394, 757
Hpy188III	TCNNGA	6 cut(s)	10, 22, 82, 349, 604, 635
Hpy8I	GTNNAC	2 cut(s)	551, 677
HpyAV	CCTTC	3 cut(s)	665, 774, 854
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	2 cut(s)	553, 944
HpyCH4V	TGCA	3 cut(s)	494, 752, 824
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 125, 128, 188, 749, 830, 929, 969
HpyF3I	CTNAG	1 cut(s)	756
HpySE526I	ACGT	2 cut(s)	553, 944
Hsp92II	CATG	3 cut(s)	775, 787, 876
HspAI	GCGC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	172
KroNI	GCCGGC	1 cut(s)	174
KspI	CCGCGG	2 cut(s)	117, 132
LmnI	GCTCC	5 cut(s)	48, 96, 268, 366, 863
Lsp1109I	GCAGC	6 cut(s)	106, 181, 381, 808, 927, 972
LweI	GCATC	2 cut(s)	169, 761
MaeI	CTAG	2 cut(s)	566, 611
MaeII	ACGT	2 cut(s)	553, 944
MaeIII	GTNAC	3 cut(s)	439, 713, 925
MboII	GAAGA	6 cut(s)	25, 97, 354, 422, 637, 986
MluCI	AATT	6 cut(s)	5, 286, 472, 487, 507, 937
MlyI	GAGTC	1 cut(s)	228
MroNI	GCCGGC	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	281, 893
MspA1I	CMGCKG	5 cut(s)	116, 131, 194, 918, 963
MspCI	CTTAAG	1 cut(s)	892
MspI	CCGG	4 cut(s)	47, 173, 188, 231
MspR9I	CCNGG	5 cut(s)	32, 47, 239, 329, 902
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	4 cut(s)	32, 239, 329, 902
MvnI	CGCG	2 cut(s)	116, 131
MwoI	GCNNNNNNNGC	8 cut(s)	116, 125, 128, 188, 749, 830, 929, 969
NaeI	GCCGGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	872
NgoMIV	GCCGGC	1 cut(s)	172
NlaIII	CATG	3 cut(s)	775, 787, 876
NlaIV	GGNNCC	2 cut(s)	26, 218
NmuCI	GTSAC	3 cut(s)	439, 713, 925
PaeR7I	CTCGAG	2 cut(s)	155, 635
PceI	AGGCCT	1 cut(s)	843
PctI	GAATGC	1 cut(s)	626
PdiI	GCCGGC	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	137, 256, 345
Pfl23II	CGTACG	1 cut(s)	571
PflFI	GACNNNGTC	1 cut(s)	437
PflMI	CCANNNNNTGG	2 cut(s)	226, 873
PfoI	TCCNGGA	3 cut(s)	45, 237, 327
PkrI	GCNGC	9 cut(s)	118, 121, 130, 193, 196, 371, 823, 917, 962
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PpuMI	RGGWCCY	1 cut(s)	24
PshAI	GACNNNNGTC	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	4 cut(s)	30, 237, 327, 900
PspGI	CCWGG	4 cut(s)	30, 237, 327, 900
PspLI	CGTACG	1 cut(s)	571
PspN4I	GGNNCC	2 cut(s)	26, 218
PspPI	GGNCC	1 cut(s)	24
PspPPI	RGGWCCY	1 cut(s)	24
PspXI	VCTCGAGB	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	963
RsaI	GTAC	4 cut(s)	521, 552, 573, 676
RsaNI	GTAC	4 cut(s)	520, 551, 572, 675
SacII	CCGCGG	2 cut(s)	117, 132
SaqAI	TTAA	2 cut(s)	281, 893
SatI	GCNGC	9 cut(s)	117, 120, 129, 192, 195, 370, 822, 916, 961
Sau96I	GGNCC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	5 cut(s)	32, 47, 239, 329, 902
SfaNI	GCATC	2 cut(s)	169, 761
SfcI	CTRYAG	1 cut(s)	954
Sfr274I	CTCGAG	2 cut(s)	155, 635
Sfr303I	CCGCGG	2 cut(s)	117, 132
SgrBI	CCGCGG	2 cut(s)	117, 132
SinI	GGWCC	1 cut(s)	24
SlaI	CTCGAG	2 cut(s)	155, 635
SmlI	CTYRAG	4 cut(s)	95, 155, 635, 892
SmoI	CTYRAG	4 cut(s)	95, 155, 635, 892
Sse9I	AATT	6 cut(s)	5, 286, 472, 487, 507, 937
SseBI	AGGCCT	1 cut(s)	843
SsiI	CCGC	7 cut(s)	114, 116, 129, 131, 192, 659, 918
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	2 cut(s)	566, 611
StuI	AGGCCT	1 cut(s)	843
StyD4I	CCNGG	5 cut(s)	30, 45, 237, 327, 900
StyI	CCWWGG	1 cut(s)	872
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	2 cut(s)	556, 947
TaqI	TCGA	3 cut(s)	156, 348, 636
TasI	AATT	6 cut(s)	5, 286, 472, 487, 507, 937
TauI	GCSGC	3 cut(s)	119, 131, 194
TfiI	GAWTC	3 cut(s)	137, 256, 345
Tru1I	TTAA	2 cut(s)	281, 893
Tru9I	TTAA	2 cut(s)	281, 893
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	3 cut(s)	439, 713, 925
TseI	GCWGC	6 cut(s)	119, 194, 369, 821, 915, 960
Tsp45I	GTSAC	3 cut(s)	439, 713, 925
TspDTI	ATGAA	3 cut(s)	17, 375, 708
TspGWI	ACGGA	4 cut(s)	311, 416, 605, 812
TspRI	CASTG	1 cut(s)	412
Tth111I	GACNNNGTC	1 cut(s)	437
Van91I	CCANNNNNTGG	2 cut(s)	226, 873
Vha464I	CTTAAG	1 cut(s)	892
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	4 cut(s)	5, 487, 507, 937
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XhoI	CTCGAG	2 cut(s)	155, 635
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	566, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.