Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010469

Physical Location & Seq

Genomic Coordinates Forward (+)

3408354 .. 3415374

Gene Structure 7021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGAAACTCGCCAAGTTCAGGAGGACCCACCTTGAGGAGACACTCCCGGAGTGGAGGGACAAGTTCCTCTGCTACAAGCTCTTGAAGAAGCTCCTCAAGCGGTTGCCCGCCACCGCGGCAACCATCGCCGCGGTGGATTCTCTCCCTCGCCACCTCGAGTTTCAGCCGGCAAATGCACATTTGGCCGTTGCTGATGGAGGTGGCGAGTTCCATCCCTTGGGGGGACTGTTCGTTCCGATTCTGAATGAGGAGCTAAAGAAGTTAAACGATTTCTATGTTGATAAGAAGGAGGAGTTCGTTATACGATTCCAGGAGCTGAAAGGAAGAATCGAGAGCATCAGGGAAAGGAGCAGCAGTGGAGGAGTTTTTACATCAGAGACCTTCAGGAAAGAAGTGATGGACATCCAAAAGGACTTTGTCACCATTCATGGGGAGATGGTGCTTCTCGAAAAACATAGCTGGTGGAATTTTAGAGCGCTTGTCAAAATTCTAAAGAAGTACGATAAACGAACTGGAGGAGTGTTGCGTTTACGTTTCACGCAACTAGATCACCAGCCTCTCTTTACAACAGAAACTCTCACGAGGCTAGTCCGTGAAAACGAGGCAACTCTCGAGCTTCCTTTCCCATTGGAAGCAGAAGTCATTGAAGGTACACCAACCACACAAAATAAACTAATAACCACCCCAGACAGAAGTCATTCAAACCCACAATCGAATGATTCCGCAAATATTGCATCTGAGACACCTTCAGACATGGAGGCAAACATAAATATACATCGTGGAACCGTTGCTGCAATGAAGGCCATTCAAGGCCTTCAAAAACCAAGCTCCACTTCCGGTCCATGGTCACTTTCAAATCACTTTAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

291

Amino Acids

33.02

Weight (kDa)

9.04

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15330 AT5G15330
fragaria_vesca	FvH4_6g48080
malus_domestica	MD09G1054300.v1.1 MD17G1052000.v1.1 MD17G1052100.v1.1
prunus_persica	Prupe.3G264200_v2.0.a1 Prupe.3G264200_v2.0.a1
pyrus_communis	pycom111g04560 pycom17g04910 pycom17g04920
rosa_chinensis	RchiOBHm_Chr2g0167401
rosa_laevigata	RLG00000021714
rosa_multiflora	Rmu_sc0001840.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083540
rosa_rugosa	Rorug02G0530200
rosa_samantha	Rh2AG597100 Rh2BG608500 Rh2CG579300 Rh2DG619700
rosa_wichuraiana	Rw2G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccII	CGCG	2 cut(s)	116, 131
AciI	CCGC	7 cut(s)	100, 108, 114, 116, 129, 131, 723
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	2 cut(s)	466, 486
AcuI	CTGAAG	2 cut(s)	367, 732
AfaI	GTAC	2 cut(s)	500, 652
AfeI	AGCGCT	1 cut(s)	477
AfiI	CCNNNNNNNGG	6 cut(s)	18, 34, 217, 221, 429, 843
AgsI	TTSAA	6 cut(s)	85, 647, 702, 809, 818, 855
AjnI	CCWGG	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	817, 849
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
AluBI	AGCT	8 cut(s)	79, 91, 253, 316, 459, 616, 828, 870
AluI	AGCT	8 cut(s)	79, 91, 253, 316, 459, 616, 828, 870
Alw26I	GTCTC	3 cut(s)	32, 371, 734
AlwNI	CAGNNNCTG	1 cut(s)	316
Ama87I	CYCGRG	2 cut(s)	155, 611
Aor51HI	AGCGCT	1 cut(s)	477
AoxI	GGCC	3 cut(s)	183, 801, 811
ApeKI	GCWGC	2 cut(s)	351, 791
ApoI	RAATTY	2 cut(s)	466, 486
Asp700I	GAANNNNTTC	1 cut(s)	697
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	2 cut(s)	24, 839
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	412, 542
AvaI	CYCGRG	2 cut(s)	155, 611
AvaII	GGWCC	2 cut(s)	24, 839
BauI	CACGAG	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	363, 778
BccI	CCATC	5 cut(s)	131, 188, 219, 391, 430
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	3 cut(s)	32, 371, 734
BfaI	CTAG	3 cut(s)	545, 587, 871
BfoI	RGCGCY	1 cut(s)	479
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	4 cut(s)	117, 129, 352, 792
BlsI	GCNGC	4 cut(s)	118, 130, 353, 793
Bme1390I	CCNGG	2 cut(s)	47, 311
Bme18I	GGWCC	2 cut(s)	24, 839
BmeT110I	CYCGRG	2 cut(s)	155, 611
BmgT120I	GGNCC	2 cut(s)	24, 839
BmiI	GGNNCC	2 cut(s)	26, 784
BmrFI	CCNGG	2 cut(s)	47, 311
BmsI	GCATC	2 cut(s)	345, 743
BoxI	GACNNNNGTC	1 cut(s)	693
BpmI	CTGGAG	1 cut(s)	534
BpuEI	CTTGAG	2 cut(s)	53, 80
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	4 cut(s)	114, 129, 216, 842
BsaWI	WCCGGW	1 cut(s)	836
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 34, 217, 221, 429, 843
Bse118I	RCCGGY	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	801
Bse8I	GATNNNNATC	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	4 cut(s)	114, 129, 216, 842
BseGI	GGATG	2 cut(s)	211, 402
BseJI	GATNNNNATC	1 cut(s)	401
BseLI	CCNNNNNNNGG	6 cut(s)	18, 34, 217, 221, 429, 843
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	6 cut(s)	50, 83, 263, 305, 375, 531
BseXI	GCAGC	2 cut(s)	363, 778
Bsh1236I	CGCG	2 cut(s)	116, 131
BshFI	GGCC	3 cut(s)	185, 803, 813
BsiHKCI	CYCGRG	2 cut(s)	155, 611
BsiSI	CCGG	3 cut(s)	47, 167, 837
BslFI	GGGAC	2 cut(s)	71, 237
BslI	CCNNNNNNNGG	6 cut(s)	18, 34, 217, 221, 429, 843
BsmAI	GTCTC	3 cut(s)	32, 371, 734
BsmFI	GGGAC	2 cut(s)	71, 237
BsnI	GGCC	3 cut(s)	185, 803, 813
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	2 cut(s)	155, 611
Bsp143I	GATC	1 cut(s)	547
Bsp19I	CCATGG	1 cut(s)	842
BspACI	CCGC	7 cut(s)	100, 108, 114, 116, 129, 131, 723
BspANI	GGCC	3 cut(s)	185, 803, 813
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	2 cut(s)	116, 131
BspLI	GGNNCC	2 cut(s)	26, 784
BspTNI	GGTCTC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	801
BsrFI	RCCGGY	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	166
BssECI	CCNNGG	4 cut(s)	114, 129, 216, 842
BssMI	GATC	1 cut(s)	547
BssSI	CACGAG	1 cut(s)	580
BssT1I	CCWWGG	2 cut(s)	216, 842
Bst2BI	CACGAG	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	228, 787
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	108, 168
BstDEI	CTNAG	1 cut(s)	738
BstDSI	CCRYGG	3 cut(s)	114, 129, 842
BstF5I	GGATG	2 cut(s)	211, 402
BstFNI	CGCG	2 cut(s)	116, 131
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	1 cut(s)	550
BstMAI	GTCTC	3 cut(s)	32, 371, 734
BstMBI	GATC	1 cut(s)	547
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 116, 125, 182, 731, 800
BstNI	CCWGG	1 cut(s)	311
BstPAI	GACNNNNGTC	1 cut(s)	693
BstSCI	CCNGG	2 cut(s)	45, 309
BstUI	CGCG	2 cut(s)	116, 131
BstV1I	GCAGC	2 cut(s)	363, 778
BsuRI	GGCC	3 cut(s)	185, 803, 813
BtgI	CCRYGG	3 cut(s)	114, 129, 842
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	211, 402
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	108, 168
CaiI	CAGNNNCTG	1 cut(s)	316
CfoI	GCGC	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	166
Cfr13I	GGNCC	2 cut(s)	24, 839
Cfr42I	CCGCGG	2 cut(s)	117, 132
Csp6I	GTAC	2 cut(s)	499, 651
CviAII	CATG	3 cut(s)	428, 754, 843
CviQI	GTAC	2 cut(s)	499, 651
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
EaeI	YGGCCR	1 cut(s)	183
Eco130I	CCWWGG	2 cut(s)	216, 842
Eco147I	AGGCCT	1 cut(s)	813
Eco31I	GGTCTC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	24, 839
Eco47III	AGCGCT	1 cut(s)	477
Eco57I	CTGAAG	2 cut(s)	367, 732
Eco88I	CYCGRG	2 cut(s)	155, 611
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	2 cut(s)	216, 842
ErhI	CCWWGG	2 cut(s)	216, 842
FaeI	CATG	3 cut(s)	431, 757, 846
FaiI	YATR	8 cut(s)	276, 302, 429, 456, 755, 767, 773, 844
FalI	AAGNNNNNCTT	2 cut(s)	817, 849
FaqI	GGGAC	2 cut(s)	71, 237
FatI	CATG	3 cut(s)	427, 753, 842
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	4 cut(s)	117, 129, 352, 792
FokI	GGATG	2 cut(s)	198, 389
Fsp4HI	GCNGC	4 cut(s)	117, 129, 352, 792
FspBI	CTAG	3 cut(s)	545, 587, 871
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	4 cut(s)	117, 129, 352, 792
GsuI	CTGGAG	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	3 cut(s)	185, 803, 813
HapII	CCGG	3 cut(s)	47, 167, 837
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	3 cut(s)	431, 757, 846
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HinfI	GANTC	5 cut(s)	137, 238, 306, 327, 719
HpaII	CCGG	3 cut(s)	47, 167, 837
HphI	GGTGA	2 cut(s)	412, 542
Hpy166II	GTNNAC	2 cut(s)	530, 653
Hpy188I	TCNGA	5 cut(s)	237, 243, 376, 739, 751
Hpy188III	TCNNGA	7 cut(s)	19, 82, 331, 385, 446, 580, 611
Hpy8I	GTNNAC	2 cut(s)	530, 653
HpyAV	CCTTC	6 cut(s)	280, 391, 641, 756, 793, 824
HpyCH4III	ACNGT	2 cut(s)	228, 787
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	3 cut(s)	176, 734, 794
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 116, 125, 182, 731, 800
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	3 cut(s)	431, 757, 846
HspAI	GCGC	1 cut(s)	476
KroI	GCCGGC	1 cut(s)	166
KroNI	GCCGGC	1 cut(s)	168
KspI	CCGCGG	2 cut(s)	117, 132
Kzo9I	GATC	1 cut(s)	547
LmnI	GCTCC	5 cut(s)	96, 250, 313, 348, 833
Lsp1109I	GCAGC	2 cut(s)	363, 778
LweI	GCATC	2 cut(s)	345, 743
MaeI	CTAG	3 cut(s)	545, 587, 871
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	2 cut(s)	418, 846
MalI	GATC	1 cut(s)	549
MboI	GATC	1 cut(s)	547
MboII	GAAGA	2 cut(s)	97, 336
MluCI	AATT	2 cut(s)	466, 486
MroNI	GCCGGC	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	697
MseI	TTAA	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	116, 131
MspI	CCGG	3 cut(s)	47, 167, 837
MspR9I	CCNGG	2 cut(s)	47, 311
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	2 cut(s)	116, 131
MwoI	GCNNNNNNNGC	6 cut(s)	97, 116, 125, 182, 731, 800
NaeI	GCCGGC	1 cut(s)	168
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	842
NdeII	GATC	1 cut(s)	547
NgoMIV	GCCGGC	1 cut(s)	166
NlaIII	CATG	3 cut(s)	431, 757, 846
NlaIV	GGNNCC	2 cut(s)	26, 784
NmuCI	GTSAC	2 cut(s)	418, 846
PaeR7I	CTCGAG	2 cut(s)	155, 611
PceI	AGGCCT	1 cut(s)	813
PdiI	GCCGGC	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	5 cut(s)	137, 238, 306, 327, 719
PflFI	GACNNNGTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	217
PfoI	TCCNGGA	2 cut(s)	45, 309
PkrI	GCNGC	4 cut(s)	118, 130, 353, 793
PpuMI	RGGWCCY	1 cut(s)	24
PshAI	GACNNNNGTC	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	26, 784
PspPI	GGNCC	2 cut(s)	24, 839
PspPPI	RGGWCCY	1 cut(s)	24
PspXI	VCTCGAGB	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	416
RsaI	GTAC	2 cut(s)	500, 652
RsaNI	GTAC	2 cut(s)	499, 651
SacII	CCGCGG	2 cut(s)	117, 132
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	4 cut(s)	117, 129, 352, 792
Sau3AI	GATC	1 cut(s)	547
Sau96I	GGNCC	2 cut(s)	24, 839
ScrFI	CCNGG	2 cut(s)	47, 311
SfaNI	GCATC	2 cut(s)	345, 743
Sfr274I	CTCGAG	2 cut(s)	155, 611
Sfr303I	CCGCGG	2 cut(s)	117, 132
SgrBI	CCGCGG	2 cut(s)	117, 132
SinI	GGWCC	2 cut(s)	24, 839
SlaI	CTCGAG	2 cut(s)	155, 611
SmlI	CTYRAG	4 cut(s)	32, 95, 155, 611
SmoI	CTYRAG	4 cut(s)	32, 95, 155, 611
Sse9I	AATT	2 cut(s)	466, 486
SseBI	AGGCCT	1 cut(s)	813
SsiI	CCGC	7 cut(s)	100, 108, 114, 116, 129, 131, 723
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	3 cut(s)	545, 587, 871
StuI	AGGCCT	1 cut(s)	813
StyD4I	CCNGG	2 cut(s)	45, 309
StyI	CCWWGG	2 cut(s)	216, 842
TaaI	ACNGT	2 cut(s)	228, 787
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	5 cut(s)	156, 330, 447, 612, 713
TasI	AATT	2 cut(s)	466, 486
TauI	GCSGC	2 cut(s)	119, 131
TfiI	GAWTC	5 cut(s)	137, 238, 306, 327, 719
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	2 cut(s)	418, 846
TseI	GCWGC	2 cut(s)	351, 791
Tsp45I	GTSAC	2 cut(s)	418, 846
TspDTI	ATGAA	3 cut(s)	17, 416, 812
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	1 cut(s)	361
Tth111I	GACNNNGTC	1 cut(s)	416
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	24, 839
XapI	RAATTY	2 cut(s)	466, 486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XhoI	CTCGAG	2 cut(s)	155, 611
XmnI	GAANNNNTTC	1 cut(s)	697
XspI	CTAG	3 cut(s)	545, 587, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.