Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010469

Physical Location & Seq

Genomic Coordinates Reverse (-)

36269164 .. 36271357

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAATTCGGGAAGGAGTTCACGAACCACTTGGAGGAGACAATCCCGGAGTGGAGGGACAAGTTCCTCTGCTACAAGCTTCTCAAGAAGCTCCTCAAACGCTTGCCCACCTCCACCGTCGATGCTCTGCCTCACCCTTTTAATCTCAATCAACGGCTCTCCGACGCCGACGCCGGTGGTGGGACCGGTCCGAGCCGGCCGTTGGGGGAGCTGCAGGATTGGTTCGTCAGGATTCTCAACGACGAGCTTGAGAAGCTCAACGATTTCTACGTTGATAAAGAGGAGGACTTCATTATTCGCTTCCAGGAGCTGAAGGGAAGAATCGAGGTGGTTAAAGAAAAGAGCAGCAAAGGTGGGGTTTTTACTTCAGAGAGTGAGTTCAGCGAGGAAGTGATGGACATTCGTAAGGACTTTGTCACCATTCATGGAGAGATGGTGCTTCTCAAGAACTACAGCTCGCTAAATTTTGCAGGGCTAGTCAAAATTCTAAAGAAGTATGATAAACGAACTGGAGAATTGTTGCGTCTACCTTTCACACAACTTGCTCTTCGTGCGCCTTTCTTTACAACACAACCTCTCACGATGCTTGTCCGTGAATGTGAGGCAAATCTTGAGCTTCTCTTCCCATTGGAAGCAGAAGTCATTGAATCTACCCCAAATATGCAAGACAATTCCAAACCACAATTGAACAGTTTGGCAACTGTTGCATCTGACACACCTTCAAACCAGGAGGCAAATGTGGATATTTACCGTGGAACAATTGCTGCAATGAGAGCCATACAAGGTCTTCAAAAGGCAAGCTCGACTTGGAATCCATGGTCAATTTCAAATCACTTACGAAATCAGGATGATGAGAGTACTGGAGCTATCACAGCCGAGAACTCTGCTTCAAACTCTGTAGCTACCTTGCACAGTGAGGAGGAGGCCGATGACGAGGATAACCAGTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

318

Amino Acids

35.85

Weight (kDa)

4.91

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 39	6.7e-10	SPX domain
SPX	PF03105	72 - 116	2.5e-06	SPX domain
SPX	PF03105	133 - 171	2.3e-08	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15330 AT5G15330
fragaria_vesca	FvH4_6g48080
malus_domestica	MD09G1054300.v1.1 MD17G1052000.v1.1 MD17G1052100.v1.1
prunus_persica	Prupe.3G264200_v2.0.a1 Prupe.3G264200_v2.0.a1
pyrus_communis	pycom111g04560 pycom17g04910 pycom17g04920
rosa_chinensis	RchiOBHm_Chr2g0167401
rosa_laevigata	RLG00000021714
rosa_multiflora	Rmu_sc0001840.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083540
rosa_rugosa	Rorug02G0530200
rosa_samantha	Rh2AG597100 Rh2BG608500 Rh2CG579300 Rh2DG619700
rosa_wichuraiana	Rw2G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	526
AcoI	YGGCCR	1 cut(s)	197
AcsI	RAATTY	3 cut(s)	5, 463, 483
AcuI	CTGAAG	2 cut(s)	332, 351
AcyI	GRCGYC	2 cut(s)	165, 171
AfaI	GTAC	1 cut(s)	859
AfiI	CCNNNNNNNGG	3 cut(s)	34, 180, 202
AgeI	ACCGGT	1 cut(s)	185
AgsI	TTSAA	6 cut(s)	647, 688, 723, 791, 828, 891
AjnI	CCWGG	2 cut(s)	303, 726
Alw26I	GTCTC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	2 cut(s)	197, 924
ApeKI	GCWGC	3 cut(s)	211, 345, 764
ApoI	RAATTY	3 cut(s)	5, 463, 483
AsiGI	ACCGGT	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	183, 188
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	125, 409
AvaII	GGWCC	2 cut(s)	183, 188
BbsI	GAAGAC	1 cut(s)	779
BbvI	GCAGC	3 cut(s)	198, 357, 751
BccI	CCATC	2 cut(s)	388, 427
BceAI	ACGGC	2 cut(s)	170, 184
BcgI	CGANNNNNNTGC	2 cut(s)	866, 900
BciT130I	CCWGG	2 cut(s)	305, 728
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	3 cut(s)	212, 451, 897
BisI	GCNGC	3 cut(s)	212, 346, 765
BlsI	GCNGC	3 cut(s)	213, 347, 766
BmcAI	AGTACT	1 cut(s)	859
Bme1390I	CCNGG	3 cut(s)	47, 305, 728
Bme18I	GGWCC	2 cut(s)	183, 188
BmgT120I	GGNCC	2 cut(s)	183, 188
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	3 cut(s)	47, 305, 728
BmsI	GCATC	3 cut(s)	112, 573, 716
BpiI	GAAGAC	1 cut(s)	779
BpmI	CTGGAG	2 cut(s)	531, 882
BpuEI	CTTGAG	4 cut(s)	68, 269, 428, 632
BpuMI	CCSGG	1 cut(s)	47
BsaHI	GRCGYC	2 cut(s)	165, 171
BsaJI	CCNNGG	2 cut(s)	751, 815
BsaWI	WCCGGW	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 180, 202
Bse118I	RCCGGY	3 cut(s)	173, 185, 195
Bse1I	ACTGG	3 cut(s)	514, 865, 943
Bse3DI	GCAATG	1 cut(s)	774
BseBI	CCWGG	2 cut(s)	305, 728
BseDI	CCNNGG	2 cut(s)	751, 815
BseGI	GGATG	1 cut(s)	853
BseLI	CCNNNNNNNGG	3 cut(s)	34, 180, 202
BseMI	GCAATG	1 cut(s)	774
BseNI	ACTGG	3 cut(s)	514, 865, 943
BseRI	GAGGAG	5 cut(s)	50, 83, 296, 932, 935
BseX3I	CGGCCG	1 cut(s)	197
BseXI	GCAGC	3 cut(s)	198, 357, 751
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	199, 926
BshTI	ACCGGT	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	200
BsiSI	CCGG	4 cut(s)	47, 174, 186, 196
BslFI	GGGAC	2 cut(s)	71, 196
BslI	CCNNNNNNNGG	3 cut(s)	34, 180, 202
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	71, 196
BsnI	GGCC	2 cut(s)	199, 926
Bsp19I	CCATGG	1 cut(s)	815
BspANI	GGCC	2 cut(s)	199, 926
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	552
BsrDI	GCAATG	1 cut(s)	774
BsrFI	RCCGGY	3 cut(s)	173, 185, 195
BsrI	ACTGG	3 cut(s)	514, 865, 943
BssAI	RCCGGY	3 cut(s)	173, 185, 195
BssECI	CCNNGG	2 cut(s)	751, 815
BssNI	GRCGYC	2 cut(s)	165, 171
BssT1I	CCWWGG	1 cut(s)	815
Bst2UI	CCWGG	2 cut(s)	305, 728
Bst4CI	ACNGT	5 cut(s)	118, 692, 703, 752, 914
Bst6I	CTCTTC	2 cut(s)	552, 626
BstACI	GRCGYC	2 cut(s)	165, 171
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstC8I	GCNNGC	4 cut(s)	104, 197, 458, 799
BstDSI	CCRYGG	2 cut(s)	751, 815
BstF5I	GGATG	1 cut(s)	853
BstHHI	GCGC	1 cut(s)	556
BstMAI	GTCTC	1 cut(s)	32
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	5 cut(s)	253, 551, 704, 773, 872
BstNI	CCWGG	2 cut(s)	305, 728
BstSCI	CCNGG	3 cut(s)	45, 303, 726
BstSFI	CTRYAG	3 cut(s)	212, 451, 897
BstV1I	GCAGC	3 cut(s)	198, 357, 751
BstV2I	GAAGAC	1 cut(s)	779
BstZI	CGGCCG	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	199, 926
BtgI	CCRYGG	2 cut(s)	751, 815
BtsCI	GGATG	1 cut(s)	853
BtsIMutI	CAGTG	1 cut(s)	919
Cac8I	GCNNGC	4 cut(s)	104, 197, 458, 799
CaiI	CAGNNNCTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	556
Cfr10I	RCCGGY	3 cut(s)	173, 185, 195
Cfr13I	GGNCC	2 cut(s)	183, 188
CpoI	CGGWCCG	1 cut(s)	188
CseI	GACGC	3 cut(s)	173, 179, 512
Csp6I	GTAC	1 cut(s)	858
CspAI	ACCGGT	1 cut(s)	185
CspI	CGGWCCG	1 cut(s)	188
CviAII	CATG	2 cut(s)	425, 816
CviQI	GTAC	1 cut(s)	858
EaeI	YGGCCR	1 cut(s)	197
EagI	CGGCCG	1 cut(s)	197
Eam1104I	CTCTTC	2 cut(s)	552, 626
EarI	CTCTTC	2 cut(s)	552, 626
EclXI	CGGCCG	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	815
Eco47I	GGWCC	2 cut(s)	183, 188
Eco52I	CGGCCG	1 cut(s)	197
Eco57I	CTGAAG	2 cut(s)	332, 351
EcoRII	CCWGG	2 cut(s)	303, 726
EcoT14I	CCWWGG	1 cut(s)	815
ErhI	CCWWGG	1 cut(s)	815
FaeI	CATG	2 cut(s)	428, 819
FaiI	YATR	5 cut(s)	426, 498, 662, 779, 817
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FaqI	GGGAC	2 cut(s)	71, 196
FatI	CATG	2 cut(s)	424, 815
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	3 cut(s)	212, 346, 765
FokI	GGATG	1 cut(s)	860
Fsp4HI	GCNGC	3 cut(s)	212, 346, 765
FspBI	CTAG	1 cut(s)	476
GlaI	GCGC	1 cut(s)	555
GluI	GCNGC	3 cut(s)	212, 346, 765
GsuI	CTGGAG	2 cut(s)	531, 882
HaeIII	GGCC	2 cut(s)	199, 926
HapII	CCGG	4 cut(s)	47, 174, 186, 196
HgaI	GACGC	3 cut(s)	173, 179, 512
HhaI	GCGC	1 cut(s)	556
Hin1I	GRCGYC	2 cut(s)	165, 171
Hin1II	CATG	2 cut(s)	428, 819
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	4 cut(s)	232, 321, 647, 811
HpaII	CCGG	4 cut(s)	47, 174, 186, 196
HphI	GGTGA	2 cut(s)	125, 409
Hpy166II	GTNNAC	2 cut(s)	21, 527
Hpy188I	TCNGA	4 cut(s)	163, 192, 370, 712
Hpy188III	TCNNGA	8 cut(s)	10, 22, 85, 229, 445, 580, 611, 845
Hpy8I	GTNNAC	2 cut(s)	21, 527
Hpy99I	CGWCG	4 cut(s)	122, 167, 173, 245
HpyAV	CCTTC	3 cut(s)	7, 307, 729
HpyCH4III	ACNGT	5 cut(s)	118, 692, 703, 752, 914
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	214, 470, 664, 707, 767, 910
HpyF10VI	GCNNNNNNNGC	5 cut(s)	253, 551, 704, 773, 872
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	2 cut(s)	165, 171
Hsp92II	CATG	2 cut(s)	428, 819
HspAI	GCGC	1 cut(s)	554
KroI	GCCGGC	1 cut(s)	195
KroNI	GCCGGC	1 cut(s)	197
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	4 cut(s)	96, 208, 307, 863
Lsp1109I	GCAGC	3 cut(s)	198, 357, 751
LweI	GCATC	3 cut(s)	112, 573, 716
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	415
MboII	GAAGA	4 cut(s)	330, 539, 613, 779
MfeI	CAATTG	2 cut(s)	683, 759
MluCI	AATT	8 cut(s)	5, 463, 483, 515, 670, 683, 759, 822
MmeI	TCCRAC	1 cut(s)	186
MroNI	GCCGGC	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	3 cut(s)	141, 333, 952
MspI	CCGG	4 cut(s)	47, 174, 186, 196
MspR9I	CCNGG	3 cut(s)	47, 305, 728
MunI	CAATTG	2 cut(s)	683, 759
MvaI	CCWGG	2 cut(s)	305, 728
MwoI	GCNNNNNNNGC	5 cut(s)	253, 551, 704, 773, 872
NaeI	GCCGGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	47
NcoI	CCATGG	1 cut(s)	815
NgoMIV	GCCGGC	1 cut(s)	195
NlaIII	CATG	2 cut(s)	428, 819
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	1 cut(s)	901
NmuCI	GTSAC	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	4 cut(s)	232, 321, 647, 811
PflFI	GACNNNGTC	1 cut(s)	413
PfoI	TCCNGGA	2 cut(s)	45, 303
PinAI	ACCGGT	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	213, 347, 766
Psp6I	CCWGG	2 cut(s)	303, 726
PspGI	CCWGG	2 cut(s)	303, 726
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	183, 188
PstI	CTGCAG	1 cut(s)	216
PstNI	CAGNNNCTG	1 cut(s)	310
PsyI	GACNNNGTC	1 cut(s)	413
RsaI	GTAC	1 cut(s)	859
RsaNI	GTAC	1 cut(s)	858
Rsr2I	CGGWCCG	1 cut(s)	188
RsrII	CGGWCCG	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	141, 333, 952
SatI	GCNGC	3 cut(s)	212, 346, 765
Sau96I	GGNCC	2 cut(s)	183, 188
ScaI	AGTACT	1 cut(s)	859
ScrFI	CCNGG	3 cut(s)	47, 305, 728
SfaNI	GCATC	3 cut(s)	112, 573, 716
SfcI	CTRYAG	3 cut(s)	212, 451, 897
SgrAI	CRCCGGYG	1 cut(s)	173
SinI	GGWCC	2 cut(s)	183, 188
SmlI	CTYRAG	4 cut(s)	83, 248, 443, 611
SmoI	CTYRAG	4 cut(s)	83, 248, 443, 611
Sse9I	AATT	8 cut(s)	5, 463, 483, 515, 670, 683, 759, 822
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	3 cut(s)	45, 303, 726
StyI	CCWWGG	1 cut(s)	815
TaaI	ACNGT	5 cut(s)	118, 692, 703, 752, 914
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	3 cut(s)	120, 324, 803
TasI	AATT	8 cut(s)	5, 463, 483, 515, 670, 683, 759, 822
TatI	WGTACW	1 cut(s)	857
TfiI	GAWTC	4 cut(s)	232, 321, 647, 811
Tru1I	TTAA	3 cut(s)	141, 333, 952
Tru9I	TTAA	3 cut(s)	141, 333, 952
TscAI	CASTG	1 cut(s)	919
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	211, 345, 764
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	17, 280, 413
TspGWI	ACGGA	1 cut(s)	581
TspRI	CASTG	1 cut(s)	919
Tth111I	GACNNNGTC	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	183, 188
XapI	RAATTY	3 cut(s)	5, 463, 483
XmiI	GTMKAC	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.