Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010469

Physical Location & Seq

Genomic Coordinates Forward (+)

4109113 .. 4109541

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1052100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGACATCCGTAAGGACTTTGTCACCATTCACGGGGAGATGGTGCTTCTCAAAAAACATGGCTGGTGGAATTTTAGAGGTACAGCAGCTATTTCTTTTCACCTTCCATATCTAACCTGTATTGTACAACCGTTAGTATCAGTGAATTTCTTCATTCTATATCTGCGTTATCTATTGCTAAAATCAGCTGTGTCTTTTGGCTCAATAGCGCTTGTCAAAATTCTAAAAAAGTACGATAAACGAACTGGAGGAGAGTTGCGTTTATGTTTCACGCAACTAGATCACCAGCCTCTCTTTACAACAGAAACTCTCACGAGGCTAGTCCGTGAATGCAAGGCAACTCTCGAGCTTCTCTTCCCATTGGAAGCAGAAGTCATTGAAGGTACACCAACCACACAAGTGAAACCACTGTTGAATAGTAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

143

Amino Acids

16.31

Weight (kDa)

9.38

Isoelectric Point (pI)

20.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15330 AT5G15330
fragaria_vesca	FvH4_6g48080
malus_domestica	MD09G1054300.v1.1 MD17G1052000.v1.1 MD17G1052100.v1.1
prunus_persica	Prupe.3G264200_v2.0.a1 Prupe.3G264200_v2.0.a1
pyrus_communis	pycom111g04560 pycom17g04910 pycom17g04920
rosa_chinensis	RchiOBHm_Chr2g0167401
rosa_laevigata	RLG00000021714
rosa_multiflora	Rmu_sc0001840.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083540
rosa_rugosa	Rorug02G0530200
rosa_samantha	Rh2AG597100 Rh2BG608500 Rh2CG579300 Rh2DG619700
rosa_wichuraiana	Rw2G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	70, 145, 219
AfaI	GTAC	4 cut(s)	82, 126, 233, 385
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	2 cut(s)	380, 415
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	3 cut(s)	89, 188, 349
AluI	AGCT	3 cut(s)	89, 188, 349
Ama87I	CYCGRG	1 cut(s)	344
Aor51HI	AGCGCT	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	3 cut(s)	70, 145, 219
Asp700I	GAANNNNTTC	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	211
AsuHPI	GGTGA	3 cut(s)	16, 92, 275
AvaI	CYCGRG	1 cut(s)	344
BauI	CACGAG	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	278, 320
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmI	GAATGC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	344
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	280
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	313
Bst2BI	CACGAG	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	132, 411
Bst6I	CTCTTC	1 cut(s)	359
BstAUI	TGTACA	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	6
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	6
BtsIMutI	CAGTG	2 cut(s)	147, 407
CfoI	GCGC	1 cut(s)	211
Csp6I	GTAC	4 cut(s)	81, 125, 232, 384
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	7 cut(s)	63, 89, 188, 201, 289, 319, 349
CviKI_1	RGCY	7 cut(s)	63, 89, 188, 201, 289, 319, 349
CviQI	GTAC	4 cut(s)	81, 125, 232, 384
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco47III	AGCGCT	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	344
FaeI	CATG	1 cut(s)	62
FaiI	YATR	4 cut(s)	60, 109, 160, 265
FatI	CATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	2 cut(s)	278, 320
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	212
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HphI	GGTGA	3 cut(s)	16, 92, 275
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188III	TCNNGA	2 cut(s)	313, 344
Hpy8I	GTNNAC	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	113, 374
HpyCH4III	ACNGT	2 cut(s)	132, 411
HpyCH4V	TGCA	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	62
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	4 cut(s)	49, 130, 231, 299
Lsp1109I	GCAGC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	278, 320
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	2 cut(s)	142, 346
MluCI	AATT	3 cut(s)	70, 145, 219
MnlI	CCTC	4 cut(s)	71, 242, 300, 309
MroXI	GAANNNNTTC	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	335
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	22
OliI	CACNNNNGTG	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	344
PctI	GAATGC	1 cut(s)	335
PdmI	GAANNNNTTC	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	88
PsyI	GACNNNGTC	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	4 cut(s)	82, 126, 233, 385
RsaNI	GTAC	4 cut(s)	81, 125, 232, 384
RseI	CAYNNNNRTG	1 cut(s)	398
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	280
SetI	ASST	7 cut(s)	82, 91, 105, 119, 190, 351, 385
Sfr274I	CTCGAG	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	70, 145, 219
SspMI	CTAG	2 cut(s)	278, 320
TaaI	ACNGT	2 cut(s)	132, 411
TaqI	TCGA	1 cut(s)	345
TasI	AATT	3 cut(s)	70, 145, 219
TatI	WGTACW	1 cut(s)	124
TscAI	CASTG	2 cut(s)	147, 414
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	142
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	147, 414
Tth111I	GACNNNGTC	1 cut(s)	20
XapI	RAATTY	3 cut(s)	70, 145, 219
XhoI	CTCGAG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	149
XspI	CTAG	2 cut(s)	278, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.