Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010469

Physical Location & Seq

Genomic Coordinates Forward (+)

6248036 .. 6250229

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAAATTCGGGAAGGAGTTCACGAGCCACTTGGAGGAGACGATCCCGGAGTGGAGGGACAAGTTCCTCTGCTACAAGCTTCTCAAGAAGCTCCTCAAGAACTTGCCCGCCGCAGCCGTCGATGCCCTGCCTCACCCCTTCAATTTTCATCGACGGCTCTCAGATGCCGACAACGGTGCCAGCAGCCGGCCCTTGGCGGACCTCCAGGATTGGTTCGTCGGGATTCTCAATGACGAGCTTGAGAAGCTCAACGATTTCTACGTTGATAAAGAGGAGGACTTCATTATTCGCTTCCAGGAGTTAAAAGGAAGAATTGAGGTAGTTAAAGAAAAGAGCAGCAGAGGTGGAGTTTTTACCTCAGAGAGTGAGTTTAGTGAAGAAGTGATGGACATTCGTAAGGACTTTGTCACCATTCATGGGGAGATGGTGCTTCTCAAAAATTATAGCTCGCTAAACTTTGCAGGGCTAGTCAAAATTCTAAAGAAGTATGATAAACGAACTGGAGGATTGTTGCGTCTACCTTTCACACAACTTGCCCTTCGTGCACCTTTCTTTACAACACAACCTCTCACGATGCTAGTGCGTGAATGCGAGGCAAATCTTGAGCTTCTCTTCCCATTGGAAGCAGAAGTCATTGAATCTACCCCAACCACGCAAGACAAGTCCAACCCCCAATTGAACAGTTCGGCTAATGTGGCATCTGACACACCTTCAAACCAGGAGGCAAATATGGATATATACCGTGGAACAATTGCTGCAATGAGGGCCATACAAGGCCTTCAAAAAGCAAGCTCGACTTGGAATCCGTGGTCATTTTCTAATCACTTTAGAAATCAGGATGATGAGAGTACTGGTGCTGTCACAGCCGAGAACTCTGATTCAAACTCTGCAGCAACCTTGCACAGCGAAGAGGAGGATGATCAAGAGGATAACCAGTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0007154 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009605 GO:0009628 GO:0009987 GO:0009991 GO:0012505 GO:0016036 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070417 GO:0071496

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPX

Protein Analysis

314

Amino Acids

35.6

Weight (kDa)

4.89

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPX	PF03105	1 - 39	7.2e-10	SPX domain
SPX	PF03105	65 - 111	4.7e-06	SPX domain
SPX	PF03105	130 - 168	2.5e-08	SPX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15330 AT5G15330
fragaria_vesca	FvH4_6g48080
malus_domestica	MD09G1054300.v1.1 MD17G1052000.v1.1 MD17G1052100.v1.1
prunus_persica	Prupe.3G264200_v2.0.a1 Prupe.3G264200_v2.0.a1
pyrus_communis	pycom111g04560 pycom17g04910 pycom17g04920
rosa_chinensis	RchiOBHm_Chr2g0167401
rosa_laevigata	RLG00000021714
rosa_multiflora	Rmu_sc0001840.1_g000004
rosa_roxburghii	Rroxscaffold_2G00083540
rosa_rugosa	Rorug02G0530200
rosa_samantha	Rh2AG597100 Rh2BG608500 Rh2CG579300 Rh2DG619700
rosa_wichuraiana	Rw2G049690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	517
AciI	CCGC	3 cut(s)	108, 111, 197
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	2 cut(s)	5, 474
AfaI	GTAC	1 cut(s)	850
AfiI	CCNNNNNNNGG	4 cut(s)	34, 186, 193, 417
AgsI	TTSAA	6 cut(s)	142, 638, 679, 714, 782, 882
AjnI	CCWGG	3 cut(s)	204, 294, 717
AluBI	AGCT	7 cut(s)	79, 91, 238, 247, 447, 607, 792
AluI	AGCT	7 cut(s)	79, 91, 238, 247, 447, 607, 792
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	32
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	940
AoxI	GGCC	3 cut(s)	188, 765, 775
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	5 cut(s)	113, 183, 336, 755, 890
ApoI	RAATTY	2 cut(s)	5, 474
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	3 cut(s)	189, 199, 765
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	125, 400
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	5 cut(s)	125, 195, 348, 742, 902
BccI	CCATC	2 cut(s)	379, 418
BceAI	ACGGC	2 cut(s)	101, 170
BcgI	CGANNNNNNTGC	4 cut(s)	158, 192, 562, 596
BciT130I	CCWGG	3 cut(s)	206, 296, 719
BclI	TGATCA	1 cut(s)	919
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	467, 578
BfmI	CTRYAG	1 cut(s)	888
BisI	GCNGC	6 cut(s)	111, 114, 184, 337, 756, 891
BlsI	GCNGC	6 cut(s)	112, 115, 185, 338, 757, 892
BmcAI	AGTACT	1 cut(s)	850
Bme1390I	CCNGG	4 cut(s)	47, 206, 296, 719
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	3 cut(s)	189, 199, 765
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	4 cut(s)	47, 206, 296, 719
BmsI	GCATC	4 cut(s)	112, 154, 564, 707
BpmI	CTGGAG	2 cut(s)	188, 522
BpuEI	CTTGAG	4 cut(s)	68, 80, 260, 623
BpuMI	CCSGG	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	192, 742, 806
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 186, 193, 417
Bse118I	RCCGGY	1 cut(s)	186
Bse1I	ACTGG	3 cut(s)	505, 856, 934
Bse3DI	GCAATG	1 cut(s)	765
BseBI	CCWGG	3 cut(s)	206, 296, 719
BseDI	CCNNGG	3 cut(s)	192, 742, 806
BseGI	GGATG	2 cut(s)	844, 922
BseLI	CCNNNNNNNGG	4 cut(s)	34, 186, 193, 417
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	174, 372
BseNI	ACTGG	3 cut(s)	505, 856, 934
BseRI	GAGGAG	4 cut(s)	50, 83, 287, 926
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	5 cut(s)	125, 195, 348, 742, 902
BshFI	GGCC	3 cut(s)	190, 767, 777
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	2 cut(s)	47, 187
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	4 cut(s)	34, 186, 193, 417
BsmAI	GTCTC	1 cut(s)	32
BsmBI	CGTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	71
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	3 cut(s)	190, 767, 777
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	2 cut(s)	42, 919
BspACI	CCGC	3 cut(s)	108, 111, 197
BspANI	GGCC	3 cut(s)	190, 767, 777
BspCNI	CTCAG	2 cut(s)	173, 371
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	892
BspPI	GGATC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	765
BsrFI	RCCGGY	1 cut(s)	186
BsrI	ACTGG	3 cut(s)	505, 856, 934
BssAI	RCCGGY	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	192, 742, 806
BssMI	GATC	2 cut(s)	42, 919
BssSI	CACGAG	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	22
Bst2UI	CCWGG	3 cut(s)	206, 296, 719
Bst4CI	ACNGT	3 cut(s)	176, 683, 743
Bst6I	CTCTTC	2 cut(s)	617, 903
BstC8I	GCNNGC	5 cut(s)	108, 181, 188, 449, 790
BstDEI	CTNAG	2 cut(s)	160, 358
BstDSI	CCRYGG	2 cut(s)	742, 806
BstF5I	GGATG	2 cut(s)	844, 922
BstKTI	GATC	2 cut(s)	45, 922
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	2 cut(s)	42, 919
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 244, 542, 695, 764, 863
BstNI	CCWGG	3 cut(s)	206, 296, 719
BstSCI	CCNGG	4 cut(s)	45, 204, 294, 717
BstSFI	CTRYAG	1 cut(s)	888
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	5 cut(s)	125, 195, 348, 742, 902
BsuRI	GGCC	3 cut(s)	190, 767, 777
BtgI	CCRYGG	2 cut(s)	742, 806
BtsCI	GGATG	2 cut(s)	844, 922
Cac8I	GCNNGC	5 cut(s)	108, 181, 188, 449, 790
CaiI	CAGNNNCTG	1 cut(s)	940
Cfr10I	RCCGGY	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	189, 199, 765
CseI	GACGC	1 cut(s)	503
Csp6I	GTAC	1 cut(s)	849
CviAII	CATG	1 cut(s)	416
CviQI	GTAC	1 cut(s)	849
DdeI	CTNAG	2 cut(s)	160, 358
DpnI	GATC	2 cut(s)	44, 921
DpnII	GATC	2 cut(s)	42, 919
Eam1104I	CTCTTC	2 cut(s)	617, 903
EarI	CTCTTC	2 cut(s)	617, 903
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	777
Eco47I	GGWCC	1 cut(s)	199
EcoRII	CCWGG	3 cut(s)	204, 294, 717
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	1 cut(s)	419
FaiI	YATR	7 cut(s)	417, 444, 489, 731, 737, 739, 770
FalI	AAGNNNNNCTT	2 cut(s)	781, 813
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	415
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	919
FblI	GTMKAC	1 cut(s)	517
Fnu4HI	GCNGC	6 cut(s)	111, 114, 184, 337, 756, 891
FokI	GGATG	2 cut(s)	851, 929
Fsp4HI	GCNGC	6 cut(s)	111, 114, 184, 337, 756, 891
FspBI	CTAG	2 cut(s)	467, 578
GluI	GCNGC	6 cut(s)	111, 114, 184, 337, 756, 891
GsuI	CTGGAG	2 cut(s)	188, 522
HaeIII	GGCC	3 cut(s)	190, 767, 777
HapII	CCGG	2 cut(s)	47, 187
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	1 cut(s)	419
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	4 cut(s)	223, 638, 802, 878
HpaII	CCGG	2 cut(s)	47, 187
HphI	GGTGA	2 cut(s)	125, 400
Hpy166II	GTNNAC	3 cut(s)	21, 518, 545
Hpy188I	TCNGA	4 cut(s)	163, 361, 703, 877
Hpy188III	TCNNGA	9 cut(s)	10, 22, 85, 97, 220, 571, 602, 836, 923
Hpy8I	GTNNAC	3 cut(s)	21, 518, 545
Hpy99I	CGWCG	3 cut(s)	122, 156, 221
HpyAV	CCTTC	5 cut(s)	7, 148, 548, 720, 788
HpyCH4III	ACNGT	3 cut(s)	176, 683, 743
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	5 cut(s)	461, 545, 758, 890, 901
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 244, 542, 695, 764, 863
HpyF3I	CTNAG	2 cut(s)	160, 358
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	419
KroI	GCCGGC	1 cut(s)	186
KroNI	GCCGGC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	919
Kzo9I	GATC	2 cut(s)	42, 919
LmnI	GCTCC	1 cut(s)	96
Lsp1109I	GCAGC	5 cut(s)	125, 195, 348, 742, 902
LweI	GCATC	4 cut(s)	112, 154, 564, 707
MaeI	CTAG	2 cut(s)	467, 578
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	406, 859
MalI	GATC	2 cut(s)	44, 921
MboI	GATC	2 cut(s)	42, 919
MboII	GAAGA	4 cut(s)	321, 389, 604, 920
MfeI	CAATTG	2 cut(s)	674, 750
MhlI	GDGCHC	1 cut(s)	547
MluCI	AATT	7 cut(s)	5, 142, 312, 439, 474, 674, 750
MmeI	TCCRAC	1 cut(s)	690
MroNI	GCCGGC	1 cut(s)	186
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	302, 324
MspI	CCGG	2 cut(s)	47, 187
MspR9I	CCNGG	4 cut(s)	47, 206, 296, 719
MunI	CAATTG	2 cut(s)	674, 750
Mva1269I	GAATGC	1 cut(s)	593
MvaI	CCWGG	3 cut(s)	206, 296, 719
MwoI	GCNNNNNNNGC	6 cut(s)	122, 244, 542, 695, 764, 863
NaeI	GCCGGC	1 cut(s)	188
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	42, 919
NgoMIV	GCCGGC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	892
NmuCI	GTSAC	2 cut(s)	406, 859
PceI	AGGCCT	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PctI	GAATGC	1 cut(s)	593
PdiI	GCCGGC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	4 cut(s)	223, 638, 802, 878
PflFI	GACNNNGTC	1 cut(s)	404
PfoI	TCCNGGA	3 cut(s)	45, 204, 294
PkrI	GCNGC	6 cut(s)	112, 115, 185, 338, 757, 892
Psp6I	CCWGG	3 cut(s)	204, 294, 717
PspGI	CCWGG	3 cut(s)	204, 294, 717
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	189, 199, 765
PstI	CTGCAG	1 cut(s)	892
PstNI	CAGNNNCTG	1 cut(s)	940
PsyI	GACNNNGTC	1 cut(s)	404
RsaI	GTAC	1 cut(s)	850
RsaNI	GTAC	1 cut(s)	849
SaqAI	TTAA	2 cut(s)	302, 324
SatI	GCNGC	6 cut(s)	111, 114, 184, 337, 756, 891
Sau3AI	GATC	2 cut(s)	42, 919
Sau96I	GGNCC	3 cut(s)	189, 199, 765
ScaI	AGTACT	1 cut(s)	850
ScrFI	CCNGG	4 cut(s)	47, 206, 296, 719
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	4 cut(s)	112, 154, 564, 707
SfcI	CTRYAG	1 cut(s)	888
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	4 cut(s)	83, 95, 239, 602
SmoI	CTYRAG	4 cut(s)	83, 95, 239, 602
Sse9I	AATT	7 cut(s)	5, 142, 312, 439, 474, 674, 750
SseBI	AGGCCT	1 cut(s)	777
SsiI	CCGC	3 cut(s)	108, 111, 197
SspMI	CTAG	2 cut(s)	467, 578
StuI	AGGCCT	1 cut(s)	777
StyD4I	CCNGG	4 cut(s)	45, 204, 294, 717
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	176, 683, 743
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	120, 151, 794
TasI	AATT	7 cut(s)	5, 142, 312, 439, 474, 674, 750
TatI	WGTACW	1 cut(s)	848
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	4 cut(s)	223, 638, 802, 878
Tru1I	TTAA	2 cut(s)	302, 324
Tru9I	TTAA	2 cut(s)	302, 324
TseFI	GTSAC	2 cut(s)	406, 859
TseI	GCWGC	5 cut(s)	113, 183, 336, 755, 890
Tsp45I	GTSAC	2 cut(s)	406, 859
TspDTI	ATGAA	4 cut(s)	17, 137, 271, 404
TspGWI	ACGGA	1 cut(s)	795
Tth111I	GACNNNGTC	1 cut(s)	404
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	2 cut(s)	5, 474
XmiI	GTMKAC	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	2 cut(s)	467, 578
ZrmI	AGTACT	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.