Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Forward (+)

5087219 .. 5090047

Gene Structure 2829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGACACGCCACCGACTTCTCGTATCGCATCTTTTGGTCAGACGGAGATTAACTGGGACAAACTTGACAAAAGGAGGTTCTACATTAATGGAGCTGGCCTCTTCACTGGTGTTACAGTAGCTCTGTATCCTGTATCCGTTGTGAAAACAAGGCTTCAAGTTGCTTCTAAAGAGATTGCTGAGAGAAGTGCCTTTTCTGTAGTTAAAGGAATTTTAAAGAATGATGGTGTTCCTGGTCTGTACCGAGGTTTTGGTACTGTCATTACAGGTGCTGTACCTGCAAGAATCATATTTCTAACTGCTCTTGAGACCACTAAGATTTCTGCTTTTAAGTTGGTTGCACCTTTGGAGTTAAGTGAACCTACACAAGCCGCCATTGCAAATGGAATTGCTGGCATGACAGCATCTCTTTTCTCACAGGCTGTGTTTGTCCCAATTGATGTTGTTAGCCAAAAGTTGATGGTACAAGGATACTCAGGTCATGCTACATATACTGGTGGTATCGATGTTGCCACAAAAATCATTAAGTCATATGGTGTAAGGGGATTATACAGAGGGTTTGGTCTGTCTGTTATGACCTATTCTCCTTCAAGTGCCGCTTGGTGGGCTAGCTATGGATCAAGCCAACGTGTTATCTGGAGATTCTTAGGTTATGGTGGTGACTCGGATGCAACTGCTGCTCCTAGTAAGTCAAAAATTGTTATGGTCCAGGCTGCTGGAGGAATTATTGCTGGTGCAACAGCATCCTCAATTACAACACCATTAGACACAATCAAAACGCGACTGCAGGTCATGGGACATCAAGAAAATAGACCTTCAGCGAAACAAGTGGTGAAAAAACTGCTAGCAGAAGATGGCTGGAAAGGATTCTATAGGGGTTTGGGCCCAAGATTCTTTAGCATGTCGGCTTGGGGAACCTCGATGATATTGACTTACGAATACTTAAAGCGTCTGTGTGCAATAGAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

323

Amino Acids

34.73

Weight (kDa)

9.78

Isoelectric Point (pI)

26.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	26 - 99	6.7e-15	Mitochondrial carrier protein
Mito_carr	PF00153	118 - 205	2.5e-18	Mitochondrial carrier protein
Mito_carr	PF00153	228 - 311	3.7e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	286, 778
AccII	CGCG	1 cut(s)	781
AciI	CCGC	2 cut(s)	372, 597
AclWI	GGATC	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	1 cut(s)	801
AfaI	GTAC	4 cut(s)	242, 256, 276, 465
AfiI	CCNNNNNNNGG	1 cut(s)	603
AflIII	ACRYGT	1 cut(s)	628
AgsI	TTSAA	2 cut(s)	158, 591
AhdI	GACNNNNNGTC	1 cut(s)	788
AjnI	CCWGG	2 cut(s)	232, 708
AluBI	AGCT	3 cut(s)	95, 122, 612
AluI	AGCT	3 cut(s)	95, 122, 612
Alw26I	GTCTC	1 cut(s)	302
AlwI	GGATC	1 cut(s)	625
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	97, 883
ApaI	GGGCCC	1 cut(s)	887
ApeKI	GCWGC	2 cut(s)	677, 713
ApoI	RAATTY	1 cut(s)	210
AseI	ATTAAT	1 cut(s)	87
Asp700I	GAANNNNTTC	1 cut(s)	866
AspS9I	GGNCC	3 cut(s)	706, 883, 884
AsuHPI	GGTGA	2 cut(s)	671, 844
AsuNHI	GCTAGC	2 cut(s)	608, 844
AvaII	GGWCC	1 cut(s)	706
BaeGI	GKGCMC	1 cut(s)	887
BaeI	ACNNNNGTAYC	2 cut(s)	463, 496
BanII	GRGCYC	1 cut(s)	887
BbvI	GCAGC	2 cut(s)	664, 700
BccI	CCATC	3 cut(s)	218, 454, 848
BciT130I	CCWGG	2 cut(s)	234, 710
BciVI	GTATCC	3 cut(s)	138, 145, 464
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	3 cut(s)	609, 684, 845
BfmI	CTRYAG	3 cut(s)	198, 785, 871
BfuAI	ACCTGC	2 cut(s)	286, 778
BfuI	GTATCC	3 cut(s)	138, 145, 464
BisI	GCNGC	4 cut(s)	372, 597, 678, 714
BlsI	GCNGC	4 cut(s)	373, 598, 679, 715
Bme1390I	CCNGG	2 cut(s)	234, 710
Bme18I	GGWCC	1 cut(s)	706
BmeRI	GACNNNNNGTC	1 cut(s)	788
BmgT120I	GGNCC	3 cut(s)	706, 883, 884
BmiI	GGNNCC	2 cut(s)	885, 916
BmrFI	CCNGG	2 cut(s)	234, 710
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	4 cut(s)	38, 413, 658, 752
BmtI	GCTAGC	2 cut(s)	612, 848
BmuI	ACTGGG	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
BpmI	CTGGAG	2 cut(s)	658, 738
BpuEI	CTTGAG	1 cut(s)	326
Bsa29I	ATCGAT	1 cut(s)	504
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	244
BsaXI	ACNNNNNCTCC	4 cut(s)	568, 598, 664, 694
Bsc4I	CCNNNNNNNGG	1 cut(s)	603
Bse1I	ACTGG	3 cut(s)	59, 112, 499
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	234, 710
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	673, 743
BseLI	CCNNNNNNNGG	1 cut(s)	603
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	171, 489
BseNI	ACTGG	3 cut(s)	59, 112, 499
BseSI	GKGCMC	1 cut(s)	887
BseXI	GCAGC	2 cut(s)	664, 700
Bsh1236I	CGCG	1 cut(s)	781
BshFI	GGCC	2 cut(s)	99, 885
BshVI	ATCGAT	1 cut(s)	504
BslFI	GGGAC	3 cut(s)	71, 416, 810
BslI	CCNNNNNNNGG	1 cut(s)	603
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	3 cut(s)	71, 416, 810
BsnI	GGCC	2 cut(s)	99, 885
Bso31I	GGTCTC	1 cut(s)	302
Bsp120I	GGGCCC	1 cut(s)	883
Bsp1286I	GDGCHC	1 cut(s)	887
Bsp143I	GATC	1 cut(s)	617
BspACI	CCGC	2 cut(s)	372, 597
BspANI	GGCC	2 cut(s)	99, 885
BspCNI	CTCAG	2 cut(s)	172, 488
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	781
BspLI	GGNNCC	2 cut(s)	885, 916
BspMAI	CTGCAG	1 cut(s)	789
BspMI	ACCTGC	2 cut(s)	286, 778
BspOI	GCTAGC	2 cut(s)	612, 848
BspPI	GGATC	1 cut(s)	625
BspTNI	GGTCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	59, 112, 499
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	617
Bst2UI	CCWGG	2 cut(s)	234, 710
Bst4CI	ACNGT	2 cut(s)	118, 259
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	4 cut(s)	97, 394, 610, 846
BstDEI	CTNAG	4 cut(s)	180, 315, 475, 646
BstF5I	GGATG	2 cut(s)	673, 743
BstFNI	CGCG	1 cut(s)	781
BstKTI	GATC	1 cut(s)	620
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	617
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 377, 605, 677
BstNI	CCWGG	2 cut(s)	234, 710
BstNSI	RCATGY	1 cut(s)	904
BstSCI	CCNGG	2 cut(s)	232, 708
BstSFI	CTRYAG	3 cut(s)	198, 785, 871
BstSLI	GKGCMC	1 cut(s)	887
BstUI	CGCG	1 cut(s)	781
BstV1I	GCAGC	2 cut(s)	664, 700
BstXI	CCANNNNNNTGG	1 cut(s)	716
Bsu15I	ATCGAT	1 cut(s)	504
BsuI	GTATCC	3 cut(s)	138, 145, 464
BsuRI	GGCC	2 cut(s)	99, 885
BsuTUI	ATCGAT	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	673, 743
BtsIMutI	CAGTG	1 cut(s)	105
BveI	ACCTGC	2 cut(s)	286, 778
Cac8I	GCNNGC	4 cut(s)	97, 394, 610, 846
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr13I	GGNCC	3 cut(s)	706, 883, 884
ClaI	ATCGAT	1 cut(s)	504
CseI	GACGC	1 cut(s)	938
Csp6I	GTAC	4 cut(s)	241, 255, 275, 464
CviAII	CATG	4 cut(s)	397, 482, 793, 901
CviQI	GTAC	4 cut(s)	241, 255, 275, 464
DdeI	CTNAG	4 cut(s)	180, 315, 475, 646
DpnI	GATC	1 cut(s)	619
DpnII	GATC	1 cut(s)	617
DraI	TTTAAA	1 cut(s)	216
DriI	GACNNNNNGTC	1 cut(s)	788
Eam1104I	CTCTTC	1 cut(s)	107
Eam1105I	GACNNNNNGTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	887
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	706
Eco57I	CTGAAG	1 cut(s)	801
EcoRII	CCWGG	2 cut(s)	232, 708
EcoT38I	GRGCYC	1 cut(s)	887
FaeI	CATG	4 cut(s)	400, 485, 796, 904
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FaqI	GGGAC	3 cut(s)	71, 416, 810
FatI	CATG	4 cut(s)	396, 481, 792, 900
FauNDI	CATATG	1 cut(s)	532
Fnu4HI	GCNGC	4 cut(s)	372, 597, 678, 714
FokI	GGATG	2 cut(s)	680, 730
FriOI	GRGCYC	1 cut(s)	887
Fsp4HI	GCNGC	4 cut(s)	372, 597, 678, 714
FspBI	CTAG	3 cut(s)	609, 684, 845
GluI	GCNGC	4 cut(s)	372, 597, 678, 714
GsuI	CTGGAG	2 cut(s)	658, 738
HaeIII	GGCC	2 cut(s)	99, 885
HgaI	GACGC	1 cut(s)	938
Hin1II	CATG	4 cut(s)	400, 485, 796, 904
HinfI	GANTC	5 cut(s)	285, 642, 662, 867, 891
HphI	GGTGA	2 cut(s)	671, 844
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	42, 667
Hpy188III	TCNNGA	3 cut(s)	305, 637, 803
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	2 cut(s)	597, 825
HpyCH4III	ACNGT	2 cut(s)	118, 259
HpyCH4IV	ACGT	1 cut(s)	628
HpyCH4V	TGCA	7 cut(s)	281, 341, 380, 671, 737, 787, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 377, 605, 677
HpyF3I	CTNAG	4 cut(s)	180, 315, 475, 646
HpySE526I	ACGT	1 cut(s)	628
Hsp92II	CATG	4 cut(s)	400, 485, 796, 904
Kzo9I	GATC	1 cut(s)	617
LmnI	GCTCC	2 cut(s)	92, 685
Lsp1109I	GCAGC	2 cut(s)	664, 700
LweI	GCATC	4 cut(s)	38, 413, 658, 752
MaeI	CTAG	3 cut(s)	609, 684, 845
MaeII	ACGT	1 cut(s)	628
MaeIII	GTNAC	2 cut(s)	112, 659
MalI	GATC	1 cut(s)	619
MboI	GATC	1 cut(s)	617
MboII	GAAGA	2 cut(s)	94, 863
MfeI	CAATTG	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	887
MluCI	AATT	6 cut(s)	210, 387, 435, 696, 723, 750
MlyI	GAGTC	1 cut(s)	656
MnlI	CCTC	7 cut(s)	69, 110, 239, 548, 713, 757, 928
MroXI	GAANNNNTTC	1 cut(s)	866
MseI	TTAA	8 cut(s)	51, 87, 204, 215, 330, 353, 525, 944
MspR9I	CCNGG	2 cut(s)	234, 710
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	2 cut(s)	234, 710
MvnI	CGCG	1 cut(s)	781
MwoI	GCNNNNNNNGC	4 cut(s)	278, 377, 605, 677
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	1 cut(s)	617
NheI	GCTAGC	2 cut(s)	608, 844
NlaIII	CATG	4 cut(s)	400, 485, 796, 904
NlaIV	GGNNCC	2 cut(s)	885, 916
NmuCI	GTSAC	1 cut(s)	659
NspI	RCATGY	1 cut(s)	904
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	4 cut(s)	285, 642, 867, 891
PkrI	GCNGC	4 cut(s)	373, 598, 679, 715
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	232, 708
PspGI	CCWGG	2 cut(s)	232, 708
PspN4I	GGNNCC	2 cut(s)	885, 916
PspOMI	GGGCCC	1 cut(s)	883
PspPI	GGNCC	3 cut(s)	706, 883, 884
PstI	CTGCAG	1 cut(s)	789
PstNI	CAGNNNCTG	1 cut(s)	272
RsaI	GTAC	4 cut(s)	242, 256, 276, 465
RsaNI	GTAC	4 cut(s)	241, 255, 275, 464
SaqAI	TTAA	8 cut(s)	51, 87, 204, 215, 330, 353, 525, 944
SatI	GCNGC	4 cut(s)	372, 597, 678, 714
Sau3AI	GATC	1 cut(s)	617
Sau96I	GGNCC	3 cut(s)	706, 883, 884
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	2 cut(s)	234, 710
SduI	GDGCHC	1 cut(s)	887
SfaNI	GCATC	4 cut(s)	38, 413, 658, 752
SfcI	CTRYAG	3 cut(s)	198, 785, 871
SinI	GGWCC	1 cut(s)	706
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	6 cut(s)	210, 387, 435, 696, 723, 750
SsiI	CCGC	2 cut(s)	372, 597
SspMI	CTAG	3 cut(s)	609, 684, 845
StyD4I	CCNGG	2 cut(s)	232, 708
TaaI	ACNGT	2 cut(s)	118, 259
TaiI	ACGT	1 cut(s)	631
TaqI	TCGA	2 cut(s)	504, 920
TasI	AATT	6 cut(s)	210, 387, 435, 696, 723, 750
TauI	GCSGC	2 cut(s)	374, 599
TfiI	GAWTC	4 cut(s)	285, 642, 867, 891
Tru1I	TTAA	8 cut(s)	51, 87, 204, 215, 330, 353, 525, 944
Tru9I	TTAA	8 cut(s)	51, 87, 204, 215, 330, 353, 525, 944
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	2 cut(s)	677, 713
Tsp45I	GTSAC	1 cut(s)	659
TspGWI	ACGGA	2 cut(s)	59, 127
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	706
VspI	ATTAAT	1 cut(s)	87
XapI	RAATTY	1 cut(s)	210
XceI	RCATGY	1 cut(s)	904
XmnI	GAANNNNTTC	1 cut(s)	866
XspI	CTAG	3 cut(s)	609, 684, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.