Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Reverse (-)

8251682 .. 8254685

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGCTGCTGCATCTGAAGCTAGCGCCCAACCCATTGGCGCCACCGAGATTAATTGGGACAAGCTAGATAAGACTAAATTTTATGTGGTTGGAGCTGGATTGTTTACAGGGGTCACAGTGGCACTGTACCCAGTTTCTGTTGTGAAAACCAGGCTACAAGTTGCTACAAGTGAATCTGTAGAGAGAAATGCATTGTCTGTAATCAAAGGCATTTGGAAAGCGGATGGTGTTCCGGGTTTGTATAGAGGGTTTGGCACAGTTATAACTGGGGCTGTTCCGACTAGGGTTATATTCATGACTGCTCTCGAGACCACAAAGGTGGCTGCTTTCAAGTTGGTTGAGCCATTCAAATTTTCTGAACCGACGCAGGCTGCTTTGGCTAATGGACTGGCTGGAATGACTGCTTCGCTTTTCTCTCAGACCATCTTTGTTCCTATTGATGTGGTTAGTCAACGGTTGATGGTGCAAGGCTATTCAGGGCATGCAAGGTACACTGGGGGGATGGACGTTGCTCGTCAGATTTTGAAGACCGACGGCATCAGGGGATTTTATAGAGGATTTGGACTTTCCATTATGACCTACTCTCCATCCAGTGCTGTATGGTGGGCTAGTTACGGTTCAAGCCAGCGCCTAATCTGGAGCGTGGGGAAAATAATGTCAGTTCAAGCTACTGGTGGGATTATTGCTGGTGCAACAGCTTCCTTCATAACAACCCCTTTGGACACAATCAAGACACGCTTACAGGTTGGACATGAAAAGAGACCCACTACAAGTGAAGTTGTTAAAAGCTTGATTAGAGATGATGGTTGGAAAGGTTTTTACAGAGGACTAGGTCCAAGATTTTTCAGCATGTCCGCATGGGGCACTTCGATGATATTGGCTTATGAATATCTGAAGCGAGTATGTGCAAAAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

306

Amino Acids

33.09

Weight (kDa)

9.75

Isoelectric Point (pI)

22.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 107	7.8e-15	Mitochondrial carrier protein
Mito_carr	PF00153	125 - 212	2.1e-21	Mitochondrial carrier protein
Mito_carr	PF00153	222 - 304	1.7e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	2 cut(s)	221, 855
AcsI	RAATTY	2 cut(s)	77, 350
AcuI	CTGAAG	2 cut(s)	36, 914
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	128, 491
AgsI	TTSAA	5 cut(s)	331, 349, 526, 621, 665
AjnI	CCWGG	1 cut(s)	149
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	6 cut(s)	20, 64, 95, 668, 698, 789
AluI	AGCT	6 cut(s)	20, 64, 95, 668, 698, 789
Alw26I	GTCTC	2 cut(s)	302, 754
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	305
ApeKI	GCWGC	4 cut(s)	5, 8, 323, 371
ApoI	RAATTY	2 cut(s)	77, 350
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	3 cut(s)	26, 41, 630
AspS9I	GGNCC	1 cut(s)	833
AsuC2I	CCSGG	1 cut(s)	234
AsuNHI	GCTAGC	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	866
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	2 cut(s)	310, 358
BccI	CCATC	6 cut(s)	218, 431, 454, 496, 595, 797
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	302, 754
BfaI	CTAG	5 cut(s)	21, 65, 282, 609, 830
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	3 cut(s)	27, 42, 631
BisI	GCNGC	4 cut(s)	6, 9, 324, 372
BlsI	GCNGC	4 cut(s)	7, 10, 325, 373
Bme1390I	CCNGG	2 cut(s)	151, 234
Bme18I	GGWCC	1 cut(s)	833
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	833
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	151, 234
BmrI	ACTGGG	3 cut(s)	125, 276, 504
BmsI	GCATC	2 cut(s)	20, 546
BmtI	GCTAGC	1 cut(s)	24
BmuI	ACTGGG	3 cut(s)	125, 276, 504
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	658
BpuMI	CCSGG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	302, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bse1I	ACTGG	6 cut(s)	131, 271, 393, 499, 591, 676
BseBI	CCWGG	1 cut(s)	151
BseGI	GGATG	3 cut(s)	229, 507, 587
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	6 cut(s)	131, 271, 393, 499, 591, 676
BseSI	GKGCMC	1 cut(s)	866
BseXI	GCAGC	2 cut(s)	310, 358
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	302, 754
BsmFI	GGGAC	1 cut(s)	71
Bso31I	GGTCTC	2 cut(s)	302, 754
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	866
BspACI	CCGC	2 cut(s)	221, 855
BspCNI	CTCAG	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	2 cut(s)	302, 754
BsrI	ACTGG	6 cut(s)	131, 271, 393, 499, 591, 676
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	5 cut(s)	118, 126, 259, 456, 617
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	4 cut(s)	22, 369, 483, 626
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	3 cut(s)	229, 507, 587
BstH2I	RGCGCY	3 cut(s)	27, 42, 631
BstHHI	GCGC	3 cut(s)	26, 41, 630
BstMAI	GTCTC	2 cut(s)	302, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 377
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	2 cut(s)	485, 853
BstSCI	CCNGG	2 cut(s)	149, 232
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	866
BstV1I	GCAGC	2 cut(s)	310, 358
BstV2I	GAAGAC	1 cut(s)	533
BstXI	CCANNNNNNTGG	2 cut(s)	35, 319
BtsCI	GGATG	3 cut(s)	229, 507, 587
BtsIMutI	CAGTG	4 cut(s)	122, 123, 492, 598
Cac8I	GCNNGC	4 cut(s)	22, 369, 483, 626
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	3 cut(s)	26, 41, 630
Cfr13I	GGNCC	1 cut(s)	833
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	127, 490
CviAII	CATG	5 cut(s)	295, 482, 752, 850, 858
CviQI	GTAC	2 cut(s)	127, 490
DdeI	CTNAG	1 cut(s)	417
DinI	GGCGCC	1 cut(s)	40
Eco31I	GGTCTC	2 cut(s)	302, 754
Eco47I	GGWCC	1 cut(s)	833
Eco57I	CTGAAG	2 cut(s)	36, 914
Eco88I	CYCGRG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	193
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
FaeI	CATG	5 cut(s)	298, 485, 755, 853, 861
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	5 cut(s)	294, 481, 751, 849, 857
Fnu4HI	GCNGC	4 cut(s)	6, 9, 324, 372
FokI	GGATG	3 cut(s)	236, 514, 574
Fsp4HI	GCNGC	4 cut(s)	6, 9, 324, 372
FspBI	CTAG	5 cut(s)	21, 65, 282, 609, 830
GlaI	GCGC	3 cut(s)	25, 40, 629
GluI	GCNGC	4 cut(s)	6, 9, 324, 372
GsuI	CTGGAG	1 cut(s)	658
HaeII	RGCGCY	3 cut(s)	27, 42, 631
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	3 cut(s)	26, 41, 630
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	298, 485, 755, 853, 861
Hin6I	GCGC	3 cut(s)	24, 39, 628
HinP1I	GCGC	3 cut(s)	24, 39, 628
HincII	GTYRAC	1 cut(s)	452
HindII	GTYRAC	1 cut(s)	452
HindIII	AAGCTT	1 cut(s)	787
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	3 cut(s)	105, 452, 492
Hpy188I	TCNGA	6 cut(s)	16, 279, 358, 420, 519, 894
Hpy188III	TCNNGA	5 cut(s)	295, 305, 307, 637, 730
Hpy8I	GTNNAC	3 cut(s)	105, 452, 492
Hpy99I	CGWCG	2 cut(s)	367, 536
HpyAV	CCTTC	1 cut(s)	712
HpyCH4III	ACNGT	5 cut(s)	118, 126, 259, 456, 617
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	6 cut(s)	11, 191, 466, 485, 692, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 377
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	298, 485, 755, 853, 861
HspAI	GCGC	3 cut(s)	24, 39, 628
KasI	GGCGCC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	92, 639
Lsp1109I	GCAGC	2 cut(s)	310, 358
LweI	GCATC	2 cut(s)	20, 546
MaeI	CTAG	5 cut(s)	21, 65, 282, 609, 830
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	112, 611
MboII	GAAGA	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	866
MluCI	AATT	3 cut(s)	52, 77, 350
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	4 cut(s)	70, 302, 727, 788
MnlI	CCTC	3 cut(s)	239, 548, 818
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	2 cut(s)	51, 783
MslI	CAYNNNNRTG	2 cut(s)	317, 869
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	151, 234
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	17, 377
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	234
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	5 cut(s)	298, 485, 755, 853, 861
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	2 cut(s)	485, 853
OliI	CACNNNNGTG	1 cut(s)	317
PaeI	GCATGC	1 cut(s)	485
PaeR7I	CTCGAG	1 cut(s)	305
PagI	TCATGA	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	831
PkrI	GCNGC	4 cut(s)	7, 10, 325, 373
PluTI	GGCGCC	1 cut(s)	42
PshBI	ATTAAT	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	833
PstNI	CAGNNNCTG	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	831
RsaI	GTAC	2 cut(s)	128, 491
RsaNI	GTAC	2 cut(s)	127, 490
RseI	CAYNNNNRTG	2 cut(s)	317, 869
SaqAI	TTAA	2 cut(s)	51, 783
SatI	GCNGC	4 cut(s)	6, 9, 324, 372
Sau96I	GGNCC	1 cut(s)	833
ScrFI	CCNGG	2 cut(s)	151, 234
SduI	GDGCHC	1 cut(s)	866
SfaNI	GCATC	2 cut(s)	20, 546
SfcI	CTRYAG	1 cut(s)	177
SfoI	GGCGCC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	833
SlaI	CTCGAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	317, 869
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SphI	GCATGC	1 cut(s)	485
Sse9I	AATT	3 cut(s)	52, 77, 350
SsiI	CCGC	2 cut(s)	221, 855
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	5 cut(s)	21, 65, 282, 609, 830
StyD4I	CCNGG	2 cut(s)	149, 232
TaaI	ACNGT	5 cut(s)	118, 126, 259, 456, 617
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	2 cut(s)	306, 869
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	3 cut(s)	52, 77, 350
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	51, 783
Tru9I	TTAA	2 cut(s)	51, 783
TscAI	CASTG	4 cut(s)	123, 129, 499, 598
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	4 cut(s)	5, 8, 323, 371
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	283, 694, 768, 900
TspRI	CASTG	4 cut(s)	123, 129, 499, 598
Tth111I	GACNNNGTC	1 cut(s)	831
VpaK11BI	GGWCC	1 cut(s)	833
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	2 cut(s)	77, 350
XceI	RCATGY	2 cut(s)	485, 853
XhoI	CTCGAG	1 cut(s)	305
XspI	CTAG	5 cut(s)	21, 65, 282, 609, 830
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.