Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Forward (+)

76050897 .. 76053159

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021514

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCTGCTGCATCTGAAGCTAGCGCCCAACCCATTGGCGCCACCGAGATTAATTGGGACAAGCTAGATAAGACTAAATTTTATGTGGTTGGAGCTGGATTGTTTACAGGGGTCACAGTGGCACTGTACCCAGTTTCTGTTGTGAAAACCAGGCTACAAGTTGCTACAAGTGAATCTGTAGAGAGAAATGCATTGTCTGTAATCAAAGGCATTTGGAAAGCGGATGGTGTTCCGGGTTTGTATAGAGGGTTTGGCACAGTCATAACTGGGGCTGTTCCGACTAGGGTTATATTCATGACTGCTCTCGAGACCACAAAGGTGGCTGCTTTCAAGTTGGTTGAGCCATTCAAATTTTCTGAACCGACGCAGGCCGCTTTGGCTAATGGACTGGCTGGAATGACTGCTTCGTTTTTCTCTCAGACCATCTTTGTTCCTATTGATGTGGTTAGTCAACGGTTGATGGTGCAAGGCTATTCAGGGCATGCAAGGTACACTGGGGGGATGGACGTTGCTCGTCAGATTTTGAAGACCGACGGCATCAGGGGATTTTATAGAGGATTTGGACTTTCCATTATGACCTACTCTCCATCCAGTGCTGTATGGTGGGCTAGTTACGGTTCAAGCCAGCGCCTAATCTGGAGTTTCTTAGGCCATGGCTCAGATGAAGCTCCCCCTAGCGTGGGGAAAATAATGTCAGTTCAAGCTACTGGTGGGATTATTGCAGGTGCAACAGCTTCCTTCATAACAACCCCTTTGGACACAATCAAGACACGCTTACAGGTCGGACACGAAAAGAGACCCACTACAAGTGAAGTTATTAAAAGCTTGATTAGAGATGATGGTTGGAAAGGTTTTTACAGGGGACTAGGTCCAAGATTTTTCAGCATGTCCGCATGGGGCACTTCGATGATATTGGCTTATGAATATCTGAAGCGAGTATGTGCAAAAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

319

Amino Acids

34.33

Weight (kDa)

9.61

Isoelectric Point (pI)

23.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 107	8.3e-15	Mitochondrial carrier protein
Mito_carr	PF00153	125 - 212	2.5e-21	Mitochondrial carrier protein
Mito_carr	PF00153	234 - 316	1.1e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	713
Acc36I	ACCTGC	1 cut(s)	713
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	3 cut(s)	221, 372, 891
AcsI	RAATTY	2 cut(s)	77, 350
AcuI	CTGAAG	2 cut(s)	36, 950
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	128, 491
AfiI	CCNNNNNNNGG	2 cut(s)	679, 680
AgsI	TTSAA	5 cut(s)	331, 349, 526, 621, 701
AjnI	CCWGG	1 cut(s)	149
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	7 cut(s)	20, 64, 95, 668, 704, 734, 825
AluI	AGCT	7 cut(s)	20, 64, 95, 668, 704, 734, 825
Alw26I	GTCTC	2 cut(s)	302, 790
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	2 cut(s)	369, 649
ApeKI	GCWGC	3 cut(s)	5, 8, 323
ApoI	RAATTY	2 cut(s)	77, 350
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	3 cut(s)	26, 41, 630
AspS9I	GGNCC	1 cut(s)	869
AsuC2I	CCSGG	1 cut(s)	234
AsuNHI	GCTAGC	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	869
BaeGI	GKGCMC	1 cut(s)	902
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	6 cut(s)	218, 431, 454, 496, 595, 833
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	302, 790
BfaI	CTAG	6 cut(s)	21, 65, 282, 609, 675, 866
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	3 cut(s)	27, 42, 631
BfuAI	ACCTGC	1 cut(s)	713
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	4 cut(s)	6, 9, 324, 372
BlsI	GCNGC	4 cut(s)	7, 10, 325, 373
Bme1390I	CCNGG	2 cut(s)	151, 234
Bme18I	GGWCC	1 cut(s)	869
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	869
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	151, 234
BmrI	ACTGGG	3 cut(s)	125, 276, 504
BmsI	GCATC	2 cut(s)	20, 546
BmtI	GCTAGC	1 cut(s)	24
BmuI	ACTGGG	3 cut(s)	125, 276, 504
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	658
BpuMI	CCSGG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	302, 790
BsaJI	CCNNGG	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	679, 680
Bse1I	ACTGG	6 cut(s)	131, 271, 393, 499, 591, 712
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	3 cut(s)	229, 507, 587
BseLI	CCNNNNNNNGG	2 cut(s)	679, 680
BseMII	CTCAG	2 cut(s)	431, 672
BseNI	ACTGG	6 cut(s)	131, 271, 393, 499, 591, 712
BseSI	GKGCMC	1 cut(s)	902
BseXI	GCAGC	1 cut(s)	310
BshFI	GGCC	2 cut(s)	371, 651
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	2 cut(s)	71, 876
BslI	CCNNNNNNNGG	2 cut(s)	679, 680
BsmAI	GTCTC	2 cut(s)	302, 790
BsmFI	GGGAC	2 cut(s)	71, 876
BsnI	GGCC	2 cut(s)	371, 651
Bso31I	GGTCTC	2 cut(s)	302, 790
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	902
Bsp19I	CCATGG	1 cut(s)	652
BspACI	CCGC	3 cut(s)	221, 372, 891
BspANI	GGCC	2 cut(s)	371, 651
BspCNI	CTCAG	2 cut(s)	430, 671
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	713
BspOI	GCTAGC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	2 cut(s)	302, 790
BsrI	ACTGG	6 cut(s)	131, 271, 393, 499, 591, 712
BssECI	CCNNGG	1 cut(s)	652
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	5 cut(s)	118, 126, 259, 456, 617
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	4 cut(s)	22, 369, 483, 626
BstDEI	CTNAG	3 cut(s)	417, 646, 658
BstDSI	CCRYGG	1 cut(s)	652
BstF5I	GGATG	3 cut(s)	229, 507, 587
BstH2I	RGCGCY	3 cut(s)	27, 42, 631
BstHHI	GCGC	3 cut(s)	26, 41, 630
BstMAI	GTCTC	2 cut(s)	302, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 377
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	2 cut(s)	485, 889
BstSCI	CCNGG	2 cut(s)	149, 232
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	902
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	533
BstXI	CCANNNNNNTGG	2 cut(s)	35, 319
BsuRI	GGCC	2 cut(s)	371, 651
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	3 cut(s)	229, 507, 587
BtsIMutI	CAGTG	4 cut(s)	122, 123, 492, 598
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	4 cut(s)	22, 369, 483, 626
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	3 cut(s)	26, 41, 630
Cfr13I	GGNCC	1 cut(s)	869
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	127, 490
CviAII	CATG	5 cut(s)	295, 482, 653, 886, 894
CviQI	GTAC	2 cut(s)	127, 490
DdeI	CTNAG	3 cut(s)	417, 646, 658
DinI	GGCGCC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	652
Eco31I	GGTCTC	2 cut(s)	302, 790
Eco47I	GGWCC	1 cut(s)	869
Eco57I	CTGAAG	2 cut(s)	36, 950
Eco88I	CYCGRG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	652
EcoT22I	ATGCAT	1 cut(s)	193
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	5 cut(s)	298, 485, 656, 889, 897
FalI	AAGNNNNNCTT	2 cut(s)	758, 790
FaqI	GGGAC	2 cut(s)	71, 876
FatI	CATG	5 cut(s)	294, 481, 652, 885, 893
Fnu4HI	GCNGC	4 cut(s)	6, 9, 324, 372
FokI	GGATG	3 cut(s)	236, 514, 574
Fsp4HI	GCNGC	4 cut(s)	6, 9, 324, 372
FspBI	CTAG	6 cut(s)	21, 65, 282, 609, 675, 866
GlaI	GCGC	3 cut(s)	25, 40, 629
GluI	GCNGC	4 cut(s)	6, 9, 324, 372
GsuI	CTGGAG	1 cut(s)	658
HaeII	RGCGCY	3 cut(s)	27, 42, 631
HaeIII	GGCC	2 cut(s)	371, 651
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	3 cut(s)	26, 41, 630
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	298, 485, 656, 889, 897
Hin6I	GCGC	3 cut(s)	24, 39, 628
HinP1I	GCGC	3 cut(s)	24, 39, 628
HincII	GTYRAC	1 cut(s)	452
HindII	GTYRAC	1 cut(s)	452
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	3 cut(s)	105, 452, 492
Hpy188I	TCNGA	8 cut(s)	16, 279, 358, 420, 519, 661, 785, 930
Hpy188III	TCNNGA	5 cut(s)	295, 305, 307, 637, 766
Hpy8I	GTNNAC	3 cut(s)	105, 452, 492
Hpy99I	CGWCG	2 cut(s)	367, 536
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	5 cut(s)	118, 126, 259, 456, 617
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	7 cut(s)	11, 191, 466, 485, 722, 728, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 377
HpyF3I	CTNAG	3 cut(s)	417, 646, 658
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	298, 485, 656, 889, 897
HspAI	GCGC	3 cut(s)	24, 39, 628
KasI	GGCGCC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	92, 673
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	20, 546
MaeI	CTAG	6 cut(s)	21, 65, 282, 609, 675, 866
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	112, 611
MboII	GAAGA	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	902
MluCI	AATT	3 cut(s)	52, 77, 350
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	4 cut(s)	70, 302, 763, 824
MnlI	CCTC	2 cut(s)	239, 548
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	2 cut(s)	51, 819
MslI	CAYNNNNRTG	2 cut(s)	317, 905
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	151, 234
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	17, 377
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	652
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	5 cut(s)	298, 485, 656, 889, 897
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	2 cut(s)	485, 889
OliI	CACNNNNGTG	1 cut(s)	317
PaeI	GCATGC	1 cut(s)	485
PaeR7I	CTCGAG	1 cut(s)	305
PagI	TCATGA	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	867
PkrI	GCNGC	4 cut(s)	7, 10, 325, 373
PluTI	GGCGCC	1 cut(s)	42
PshBI	ATTAAT	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	869
PstNI	CAGNNNCTG	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	867
RsaI	GTAC	2 cut(s)	128, 491
RsaNI	GTAC	2 cut(s)	127, 490
RseI	CAYNNNNRTG	2 cut(s)	317, 905
SaqAI	TTAA	2 cut(s)	51, 819
SatI	GCNGC	4 cut(s)	6, 9, 324, 372
Sau96I	GGNCC	1 cut(s)	869
ScrFI	CCNGG	2 cut(s)	151, 234
SduI	GDGCHC	1 cut(s)	902
SfaNI	GCATC	2 cut(s)	20, 546
SfcI	CTRYAG	1 cut(s)	177
SfoI	GGCGCC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	869
SlaI	CTCGAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	317, 905
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SphI	GCATGC	1 cut(s)	485
Sse9I	AATT	3 cut(s)	52, 77, 350
SsiI	CCGC	3 cut(s)	221, 372, 891
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	6 cut(s)	21, 65, 282, 609, 675, 866
StyD4I	CCNGG	2 cut(s)	149, 232
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	5 cut(s)	118, 126, 259, 456, 617
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	2 cut(s)	306, 905
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	3 cut(s)	52, 77, 350
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	51, 819
Tru9I	TTAA	2 cut(s)	51, 819
TscAI	CASTG	4 cut(s)	123, 129, 499, 598
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	5, 8, 323
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	283, 678, 730, 936
TspRI	CASTG	4 cut(s)	123, 129, 499, 598
Tth111I	GACNNNGTC	1 cut(s)	867
VpaK11BI	GGWCC	1 cut(s)	869
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	2 cut(s)	77, 350
XceI	RCATGY	2 cut(s)	485, 889
XhoI	CTCGAG	1 cut(s)	305
XspI	CTAG	6 cut(s)	21, 65, 282, 609, 675, 866
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.