Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00319

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Reverse (-)

21639 .. 23896

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTGCTGCATCTGAAGCTAGCGCCCAACCCATTGGCGCCACCGAGATTAATTGGGACAAGCTAGATAAGACTAAATTTTATGTGGTTGGAGCTGGATTGTTTACAGGGGTCACAGTGGCACTGTACCCAGTTTCTGGTTATATTGATGCTCTTGAGACCACAAAGGTGGCTGCTTTCAAGTTGGCCGCTTTGGCTAATGGACTGGCTGGAATGACTGCTTCGCTTTTCTCTCAGACCATCTTTGTTCCTATTGATGTGGTTAGTCAACGGTTGATGGTGCAAGGCTATTCAGGGCATGCAAGGTACACTGGGGGGATGGACGTTGCTCGTCAGATTTTGAAGACAGACGGCATCAGGGGATTTTATAGAGGATTTGGACTTTCCATTATGACCTACTCTCCATCCAGTGCTGTATGGTGGGCTAGTTACGGTTCAAGCCAGCGCCTAATCTGGAGTTTCTTAGGCCATGGCTCAGATGAAGCTCCCCCTAGCGTGGGGAAAATAATGTCAGTTCAAGCTACTGGTGGGATTATTGCGGGTGCAACAGCTTCCTTCGTAACAACTCCTTTGGACACAATCAAGACACGCTTACAGGTCGGACACGAAAAGAGACCCACTACAAGTGAAGTTATTAAAAGCTTGATCAAAGATGATGGTTGGAAAGGTTTTTACAGGGGACTAGGTCCAAGATTTTTCAGCATGTCCGCATGGGGCACTTCGATGATATTGGCTTATGAATATCTGAAGCGAGTATGTGCAAAAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

257

Amino Acids

27.64

Weight (kDa)

9.32

Isoelectric Point (pI)

22.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	63 - 151	1.4e-21	Mitochondrial carrier protein
Mito_carr	PF00153	173 - 255	4.3e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	137
AciI	CCGC	3 cut(s)	189, 539, 708
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	2 cut(s)	36, 767
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	128, 308
AfiI	CCNNNNNNNGG	3 cut(s)	137, 496, 497
AgsI	TTSAA	4 cut(s)	181, 343, 438, 518
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	7 cut(s)	20, 64, 95, 485, 521, 551, 642
AluI	AGCT	7 cut(s)	20, 64, 95, 485, 521, 551, 642
Alw26I	GTCTC	2 cut(s)	152, 607
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	2 cut(s)	186, 466
ApeKI	GCWGC	3 cut(s)	5, 8, 173
ApoI	RAATTY	1 cut(s)	77
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	3 cut(s)	26, 41, 447
AspS9I	GGNCC	1 cut(s)	686
AsuNHI	GCTAGC	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	686
BaeGI	GKGCMC	1 cut(s)	719
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	5 cut(s)	248, 271, 313, 412, 650
BceAI	ACGGC	1 cut(s)	367
BclI	TGATCA	1 cut(s)	645
BcoDI	GTCTC	2 cut(s)	152, 607
BfaI	CTAG	5 cut(s)	21, 65, 426, 492, 683
BfoI	RGCGCY	3 cut(s)	27, 42, 448
BglI	GCCNNNNNGGC	1 cut(s)	194
BisI	GCNGC	4 cut(s)	6, 9, 174, 189
BlsI	GCNGC	4 cut(s)	7, 10, 175, 190
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	1 cut(s)	40
BmrI	ACTGGG	2 cut(s)	125, 321
BmsI	GCATC	3 cut(s)	20, 139, 363
BmtI	GCTAGC	1 cut(s)	24
BmuI	ACTGGG	2 cut(s)	125, 321
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	152, 607
BsaJI	CCNNGG	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	385, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 496, 497
Bse1I	ACTGG	5 cut(s)	131, 210, 316, 408, 529
BseDI	CCNNGG	1 cut(s)	469
BseGI	GGATG	2 cut(s)	324, 404
BseLI	CCNNNNNNNGG	3 cut(s)	137, 496, 497
BseMII	CTCAG	2 cut(s)	248, 489
BseNI	ACTGG	5 cut(s)	131, 210, 316, 408, 529
BseSI	GKGCMC	1 cut(s)	719
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	2 cut(s)	188, 468
BshNI	GGYRCC	1 cut(s)	38
BslFI	GGGAC	2 cut(s)	71, 693
BslI	CCNNNNNNNGG	3 cut(s)	137, 496, 497
BsmAI	GTCTC	2 cut(s)	152, 607
BsmFI	GGGAC	2 cut(s)	71, 693
BsnI	GGCC	2 cut(s)	188, 468
Bso31I	GGTCTC	2 cut(s)	152, 607
Bsp1286I	GDGCHC	1 cut(s)	719
Bsp143I	GATC	1 cut(s)	645
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	3 cut(s)	189, 539, 708
BspANI	GGCC	2 cut(s)	188, 468
BspCNI	CTCAG	2 cut(s)	247, 488
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	2 cut(s)	152, 607
BsrI	ACTGG	5 cut(s)	131, 210, 316, 408, 529
BssECI	CCNNGG	1 cut(s)	469
BssMI	GATC	1 cut(s)	645
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	469
Bst4CI	ACNGT	4 cut(s)	118, 126, 273, 434
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	22, 300, 443
BstDEI	CTNAG	3 cut(s)	234, 463, 475
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	2 cut(s)	324, 404
BstH2I	RGCGCY	3 cut(s)	27, 42, 448
BstHHI	GCGC	3 cut(s)	26, 41, 447
BstKTI	GATC	1 cut(s)	648
BstMAI	GTCTC	2 cut(s)	152, 607
BstMBI	GATC	1 cut(s)	645
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 194
BstNSI	RCATGY	2 cut(s)	302, 706
BstSLI	GKGCMC	1 cut(s)	719
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	350
BstXI	CCANNNNNNTGG	2 cut(s)	35, 169
BsuRI	GGCC	2 cut(s)	188, 468
BtgI	CCRYGG	1 cut(s)	469
BtsCI	GGATG	2 cut(s)	324, 404
BtsIMutI	CAGTG	4 cut(s)	122, 123, 309, 415
Cac8I	GCNNGC	3 cut(s)	22, 300, 443
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	3 cut(s)	26, 41, 447
Cfr13I	GGNCC	1 cut(s)	686
Csp6I	GTAC	2 cut(s)	127, 307
CviAII	CATG	4 cut(s)	299, 470, 703, 711
CviQI	GTAC	2 cut(s)	127, 307
DdeI	CTNAG	3 cut(s)	234, 463, 475
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	1 cut(s)	647
DpnII	GATC	1 cut(s)	645
EaeI	YGGCCR	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	469
Eco31I	GGTCTC	2 cut(s)	152, 607
Eco47I	GGWCC	1 cut(s)	686
Eco57I	CTGAAG	2 cut(s)	36, 767
EcoT14I	CCWWGG	1 cut(s)	469
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	469
FaeI	CATG	4 cut(s)	302, 473, 706, 714
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	2 cut(s)	71, 693
FatI	CATG	4 cut(s)	298, 469, 702, 710
FauI	CCCGC	1 cut(s)	532
FbaI	TGATCA	1 cut(s)	645
Fnu4HI	GCNGC	4 cut(s)	6, 9, 174, 189
FokI	GGATG	2 cut(s)	331, 391
Fsp4HI	GCNGC	4 cut(s)	6, 9, 174, 189
FspBI	CTAG	5 cut(s)	21, 65, 426, 492, 683
GlaI	GCGC	3 cut(s)	25, 40, 446
GluI	GCNGC	4 cut(s)	6, 9, 174, 189
GsuI	CTGGAG	1 cut(s)	475
HaeII	RGCGCY	3 cut(s)	27, 42, 448
HaeIII	GGCC	2 cut(s)	188, 468
HhaI	GCGC	3 cut(s)	26, 41, 447
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	302, 473, 706, 714
Hin6I	GCGC	3 cut(s)	24, 39, 445
HinP1I	GCGC	3 cut(s)	24, 39, 445
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	640
Hpy166II	GTNNAC	3 cut(s)	105, 269, 309
Hpy188I	TCNGA	6 cut(s)	16, 237, 336, 478, 602, 747
Hpy188III	TCNNGA	3 cut(s)	155, 454, 583
Hpy8I	GTNNAC	3 cut(s)	105, 269, 309
HpyAV	CCTTC	1 cut(s)	565
HpyCH4III	ACNGT	4 cut(s)	118, 126, 273, 434
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	5 cut(s)	11, 283, 302, 545, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 194
HpyF3I	CTNAG	3 cut(s)	234, 463, 475
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	302, 473, 706, 714
HspAI	GCGC	3 cut(s)	24, 39, 445
KasI	GGCGCC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	1 cut(s)	645
LmnI	GCTCC	2 cut(s)	92, 490
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	3 cut(s)	20, 139, 363
MaeI	CTAG	5 cut(s)	21, 65, 426, 492, 683
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	3 cut(s)	112, 428, 559
MalI	GATC	1 cut(s)	647
MboI	GATC	1 cut(s)	645
MboII	GAAGA	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	719
MluCI	AATT	2 cut(s)	52, 77
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	3 cut(s)	70, 580, 641
MnlI	CCTC	1 cut(s)	365
MseI	TTAA	2 cut(s)	51, 636
MslI	CAYNNNNRTG	2 cut(s)	167, 722
MwoI	GCNNNNNNNGC	2 cut(s)	17, 194
NarI	GGCGCC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	1 cut(s)	645
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	4 cut(s)	302, 473, 706, 714
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	112
NspI	RCATGY	2 cut(s)	302, 706
OliI	CACNNNNGTG	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	302
PflFI	GACNNNGTC	1 cut(s)	684
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	7, 10, 175, 190
PluTI	GGCGCC	1 cut(s)	42
PshBI	ATTAAT	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	684
RsaI	GTAC	2 cut(s)	128, 308
RsaNI	GTAC	2 cut(s)	127, 307
RseI	CAYNNNNRTG	2 cut(s)	167, 722
SaqAI	TTAA	2 cut(s)	51, 636
SatI	GCNGC	4 cut(s)	6, 9, 174, 189
Sau3AI	GATC	1 cut(s)	645
Sau96I	GGNCC	1 cut(s)	686
SduI	GDGCHC	1 cut(s)	719
SfaNI	GCATC	3 cut(s)	20, 139, 363
SfoI	GGCGCC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	2 cut(s)	167, 722
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	2 cut(s)	52, 77
SsiI	CCGC	3 cut(s)	189, 539, 708
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	5 cut(s)	21, 65, 426, 492, 683
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	4 cut(s)	118, 126, 273, 434
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	722
TasI	AATT	2 cut(s)	52, 77
TauI	GCSGC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	51, 636
Tru9I	TTAA	2 cut(s)	51, 636
TscAI	CASTG	4 cut(s)	123, 129, 316, 415
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	5, 8, 173
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	495, 753
TspRI	CASTG	4 cut(s)	123, 129, 316, 415
Tth111I	GACNNNGTC	1 cut(s)	684
Van91I	CCANNNNNTGG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	686
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	2 cut(s)	302, 706
XspI	CTAG	5 cut(s)	21, 65, 426, 492, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.