Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Forward (+)

83425859 .. 83428878

Gene Structure 3020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG602500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACTGCTCTCGAGACCACAAAGGTGGCTGCTTTCAAGTTGGTTGAGCCATTCAAATTTTCTGAACCGACGCAGGCCGCTTTGGCTAATGGACTGGCTGGAATGACTGCTTCGCTTTTCTCTCAGACCATCTTTGTTCCTATTGATGTGGTTAGTCAACGGTTGATGGTGCAAGGCTATTCAGGGCATGCAAGGTACACTGGGGGGATGGACGTTGCTCGTCAGATTTTGAAGACCGACGGCATCCGGGGTTTTTATAGAGGATTTGGACTTTCCATTATGACCTACTCTCCATCCAGTGCTGTATGGTGGGCTAGTTACGGTTCAAGCCAGCGCCTAATCTGGAGTTTCTTAGGCCATGGCTCAGATGAAGCCCCCCCTAGCGTGGGGAAAATAATGTCAGTTCAAGCTACTGGTGGGATTATTGCGGGTGCAACAGCTTCCTTCATAACAACTCCTTTGGACACAATCAAGACACGCTTACAGGTCGGACACGAAAAGAGACCCACTACAAGTGAAGTTATTAAAAGCTTGATTAGAGATGATGGTTGGAAAGGTTTTTACAGGGGACTAGGTCCAAGATTTTTCAGCATGTCCGCATGGGGCACTTCGATGATTTTGGCTTATGAATATCTGAGTATGGGCTCTTACCTTTATGCTGCCTTATTACACTTGGGTCTCCTTCTCAAGATATTTTTGTTACATCATGTTTACCCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

240

Amino Acids

26.25

Weight (kDa)

9.66

Isoelectric Point (pI)

23.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	27 - 114	1.4e-21	Mitochondrial carrier protein
Mito_carr	PF00153	136 - 212	2.7e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	78, 428, 597
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	385, 386
AgsI	TTSAA	5 cut(s)	37, 55, 232, 327, 407
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	3 cut(s)	410, 440, 531
AluI	AGCT	3 cut(s)	410, 440, 531
Alw26I	GTCTC	3 cut(s)	8, 496, 683
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	75, 355
ApeKI	GCWGC	2 cut(s)	29, 659
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	575
AsuC2I	CCSGG	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	647
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	16, 646
BccI	CCATC	5 cut(s)	137, 160, 202, 301, 539
BceAI	ACGGC	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	3 cut(s)	8, 496, 683
BfaI	CTAG	3 cut(s)	315, 381, 572
BfoI	RGCGCY	1 cut(s)	337
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	3 cut(s)	30, 78, 660
BlsI	GCNGC	3 cut(s)	31, 79, 661
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	575
BmrFI	CCNGG	1 cut(s)	248
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	1 cut(s)	248
BsaI	GGTCTC	3 cut(s)	8, 496, 683
BsaJI	CCNNGG	2 cut(s)	247, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 386
Bse1I	ACTGG	4 cut(s)	99, 205, 297, 418
BseDI	CCNNGG	2 cut(s)	247, 358
BseGI	GGATG	3 cut(s)	213, 243, 293
BseLI	CCNNNNNNNGG	2 cut(s)	385, 386
BseMII	CTCAG	3 cut(s)	137, 378, 626
BseNI	ACTGG	4 cut(s)	99, 205, 297, 418
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	16, 646
BshFI	GGCC	2 cut(s)	77, 357
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	2 cut(s)	385, 386
BsmAI	GTCTC	3 cut(s)	8, 496, 683
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	77, 357
Bso31I	GGTCTC	3 cut(s)	8, 496, 683
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	608, 647
Bsp19I	CCATGG	1 cut(s)	358
BspACI	CCGC	3 cut(s)	78, 428, 597
BspANI	GGCC	2 cut(s)	77, 357
BspCNI	CTCAG	3 cut(s)	136, 377, 627
BspTNI	GGTCTC	3 cut(s)	8, 496, 683
BsrI	ACTGG	4 cut(s)	99, 205, 297, 418
BssECI	CCNNGG	2 cut(s)	247, 358
BssT1I	CCWWGG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	162, 323
BstC8I	GCNNGC	3 cut(s)	75, 189, 332
BstDEI	CTNAG	4 cut(s)	123, 352, 364, 635
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	3 cut(s)	213, 243, 293
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstMAI	GTCTC	3 cut(s)	8, 496, 683
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	191, 595
BstSCI	CCNGG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	2 cut(s)	16, 646
BstV2I	GAAGAC	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	77, 357
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	3 cut(s)	213, 243, 293
BtsIMutI	CAGTG	2 cut(s)	198, 304
Cac8I	GCNNGC	3 cut(s)	75, 189, 332
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	5 cut(s)	188, 359, 592, 600, 707
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	4 cut(s)	123, 352, 364, 635
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	647
Eco31I	GGTCTC	3 cut(s)	8, 496, 683
Eco47I	GGWCC	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	5 cut(s)	191, 362, 595, 603, 710
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	5 cut(s)	187, 358, 591, 599, 706
FauI	CCCGC	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	30, 78, 660
FokI	GGATG	3 cut(s)	220, 230, 280
FriOI	GRGCYC	1 cut(s)	647
Fsp4HI	GCNGC	3 cut(s)	30, 78, 660
FspBI	CTAG	3 cut(s)	315, 381, 572
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	3 cut(s)	30, 78, 660
GsuI	CTGGAG	1 cut(s)	364
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	2 cut(s)	77, 357
HapII	CCGG	1 cut(s)	247
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	5 cut(s)	191, 362, 595, 603, 710
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	529
HpaII	CCGG	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	158, 198, 712
Hpy188I	TCNGA	6 cut(s)	64, 126, 225, 367, 491, 636
Hpy188III	TCNNGA	5 cut(s)	11, 13, 343, 472, 688
Hpy8I	GTNNAC	3 cut(s)	158, 198, 712
Hpy99I	CGWCG	2 cut(s)	73, 242
HpyAV	CCTTC	2 cut(s)	454, 692
HpyCH4III	ACNGT	2 cut(s)	162, 323
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	172, 191, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	4 cut(s)	123, 352, 364, 635
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	191, 362, 595, 603, 710
HspAI	GCGC	1 cut(s)	334
Lsp1109I	GCAGC	2 cut(s)	16, 646
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	3 cut(s)	315, 381, 572
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	317, 699
MboII	GAAGA	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	608, 647
MluCI	AATT	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	469, 530
MnlI	CCTC	1 cut(s)	254
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	2 cut(s)	23, 611
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	358
NlaIII	CATG	5 cut(s)	191, 362, 595, 603, 710
NspI	RCATGY	2 cut(s)	191, 595
OliI	CACNNNNGTG	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	573
PkrI	GCNGC	3 cut(s)	31, 79, 661
PspPI	GGNCC	1 cut(s)	575
PsyI	GACNNNGTC	1 cut(s)	573
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	2 cut(s)	23, 611
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	3 cut(s)	30, 78, 660
Sau96I	GGNCC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	2 cut(s)	608, 647
SfaNI	GCATC	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	2 cut(s)	23, 611
SmlI	CTYRAG	2 cut(s)	11, 686
SmoI	CTYRAG	2 cut(s)	11, 686
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	78, 428, 597
SspMI	CTAG	3 cut(s)	315, 381, 572
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	162, 323
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	12, 611
TaqII	GACCGA	1 cut(s)	251
TasI	AATT	1 cut(s)	56
TauI	GCSGC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	2 cut(s)	205, 304
TseI	GCWGC	2 cut(s)	29, 659
TspDTI	ATGAA	3 cut(s)	384, 436, 642
TspRI	CASTG	2 cut(s)	205, 304
Tth111I	GACNNNGTC	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	2 cut(s)	191, 595
XhoI	CTCGAG	1 cut(s)	11
XspI	CTAG	3 cut(s)	315, 381, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.