Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Forward (+)

80197981 .. 80200974

Gene Structure 2994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCTGCTGCATCTGAAGCTAGCGCCCAACCCATTGGCGCCACCGAGATTAATTGGGACAAGCTAGATAAGACTAAATTTTATGTGGTTGGAGCTGGATTGTTTACAGGGGTCACAGTGGCACTGTACCCAGTTTCTGTTGTGAAAACCAGGCTACAAGTTGCTACAAGTGAATCTGTAGAGAGAAATGCATTGTCTGTAATCAAAGGCATTTGGAAAGCGGATGGTGTTCCTGGTTTGTATAGGGGATTTGGCACAGTCATAACTGGGGCTGTTCCGACTAGGGTTATATTCATGACTGCTCTCGAGACCACAAAGGTGGCTGCTTTCAAGTTGGTTGAGCCATTCAAATTTTCTGAACCGACGCAGGCCGCTTTGGCTAATGGACTGGCTGGAATGACTGCTTCGCTTTTCTCTCAGACCATCTTTGTTCCTATTGATGTGGTTAGTCAGCGGTTGATGGTGCAAGGCTATTCAGGGCATGTGAGGTACACTGGGGGGATGGACGTTGCTCGTCAGATTTTGAAGACCGACGGCATCAGGGGATTTTATAGAGGATTTGGACTTTCCATTATGACCTACTCTCCATCCAGTGCTGTATGGTGGGCTAGTTACGGTTCAAGCCAGCGCCTAATCTGGAGTTTCTTTGGCCATGGCTCAGATGAAGCTCCCCCTAGCGTGGGGAAAATAATGTCAGTTCAAGCTACTGGTGGGATTATTGCGGGTGCAACAGCTTCCTTCATAACAACCCCTTTGGACACAATAAAGACACGCTTACAGGTCGGACACGAAAAGAGACCCACTACAAGTGAAGTTGTTAAAAGCTTGATTAGAGATGATGGTTGGAAAGGTTTTTACAGAGGGCTAGGTCCAAGATTTTTCAGCATGTCCGCATGGGGCACTTCGATGATATTGGCTTATGAATATCTGAAGCGAGTATGTGCAAAAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

318

Amino Acids

34.35

Weight (kDa)

9.61

Isoelectric Point (pI)

23.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	32 - 107	8.3e-15	Mitochondrial carrier protein
Mito_carr	PF00153	125 - 212	8.1e-21	Mitochondrial carrier protein
Mito_carr	PF00153	234 - 316	1.9e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AciI	CCGC	5 cut(s)	221, 372, 454, 722, 891
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	2 cut(s)	77, 350
AcuI	CTGAAG	2 cut(s)	36, 950
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	128, 491
AfiI	CCNNNNNNNGG	2 cut(s)	679, 680
AgsI	TTSAA	5 cut(s)	331, 349, 526, 621, 701
AjnI	CCWGG	2 cut(s)	149, 232
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	7 cut(s)	20, 64, 95, 668, 704, 734, 825
AluI	AGCT	7 cut(s)	20, 64, 95, 668, 704, 734, 825
Alw26I	GTCTC	2 cut(s)	302, 790
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	2 cut(s)	369, 649
ApeKI	GCWGC	3 cut(s)	5, 8, 323
ApoI	RAATTY	2 cut(s)	77, 350
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	3 cut(s)	26, 41, 630
AspS9I	GGNCC	1 cut(s)	869
AsuNHI	GCTAGC	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	869
BaeGI	GKGCMC	1 cut(s)	902
BalI	TGGCCA	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	6 cut(s)	218, 431, 454, 496, 595, 833
BceAI	ACGGC	1 cut(s)	550
BciT130I	CCWGG	2 cut(s)	151, 234
BcoDI	GTCTC	2 cut(s)	302, 790
BfaI	CTAG	6 cut(s)	21, 65, 282, 609, 675, 866
BfmI	CTRYAG	1 cut(s)	177
BfoI	RGCGCY	3 cut(s)	27, 42, 631
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	4 cut(s)	6, 9, 324, 372
BlsI	GCNGC	4 cut(s)	7, 10, 325, 373
Bme1390I	CCNGG	2 cut(s)	151, 234
Bme18I	GGWCC	1 cut(s)	869
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	869
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	151, 234
BmrI	ACTGGG	3 cut(s)	125, 276, 504
BmsI	GCATC	2 cut(s)	20, 546
BmtI	GCTAGC	1 cut(s)	24
BmuI	ACTGGG	3 cut(s)	125, 276, 504
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	658
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	2 cut(s)	302, 790
BsaJI	CCNNGG	1 cut(s)	652
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	2 cut(s)	679, 680
Bse1I	ACTGG	6 cut(s)	131, 271, 393, 499, 591, 712
BseBI	CCWGG	2 cut(s)	151, 234
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	3 cut(s)	229, 507, 587
BseLI	CCNNNNNNNGG	2 cut(s)	679, 680
BseMII	CTCAG	2 cut(s)	431, 672
BseNI	ACTGG	6 cut(s)	131, 271, 393, 499, 591, 712
BseSI	GKGCMC	1 cut(s)	902
BseXI	GCAGC	1 cut(s)	310
BshFI	GGCC	2 cut(s)	371, 651
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	679, 680
BsmAI	GTCTC	2 cut(s)	302, 790
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	371, 651
Bso31I	GGTCTC	2 cut(s)	302, 790
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	902
Bsp19I	CCATGG	1 cut(s)	652
BspACI	CCGC	5 cut(s)	221, 372, 454, 722, 891
BspANI	GGCC	2 cut(s)	371, 651
BspCNI	CTCAG	2 cut(s)	430, 671
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	38
BspTNI	GGTCTC	2 cut(s)	302, 790
BsrI	ACTGG	6 cut(s)	131, 271, 393, 499, 591, 712
BssECI	CCNNGG	1 cut(s)	652
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	652
Bst2UI	CCWGG	2 cut(s)	151, 234
Bst4CI	ACNGT	4 cut(s)	118, 126, 259, 617
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	22, 369, 626
BstDEI	CTNAG	2 cut(s)	417, 658
BstDSI	CCRYGG	1 cut(s)	652
BstF5I	GGATG	3 cut(s)	229, 507, 587
BstH2I	RGCGCY	3 cut(s)	27, 42, 631
BstHHI	GCGC	3 cut(s)	26, 41, 630
BstMAI	GTCTC	2 cut(s)	302, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 377
BstNI	CCWGG	2 cut(s)	151, 234
BstNSI	RCATGY	2 cut(s)	485, 889
BstSCI	CCNGG	2 cut(s)	149, 232
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	902
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	533
BstXI	CCANNNNNNTGG	2 cut(s)	35, 319
BsuRI	GGCC	2 cut(s)	371, 651
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	3 cut(s)	229, 507, 587
BtsIMutI	CAGTG	4 cut(s)	122, 123, 492, 598
Cac8I	GCNNGC	3 cut(s)	22, 369, 626
CaiI	CAGNNNCTG	1 cut(s)	137
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	3 cut(s)	26, 41, 630
Cfr13I	GGNCC	1 cut(s)	869
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	127, 490
CviAII	CATG	5 cut(s)	295, 482, 653, 886, 894
CviQI	GTAC	2 cut(s)	127, 490
DdeI	CTNAG	2 cut(s)	417, 658
DinI	GGCGCC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	649
Eco130I	CCWWGG	1 cut(s)	652
Eco31I	GGTCTC	2 cut(s)	302, 790
Eco47I	GGWCC	1 cut(s)	869
Eco57I	CTGAAG	2 cut(s)	36, 950
Eco88I	CYCGRG	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	149, 232
EcoT14I	CCWWGG	1 cut(s)	652
EcoT22I	ATGCAT	1 cut(s)	193
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	5 cut(s)	298, 485, 656, 889, 897
FalI	AAGNNNNNCTT	2 cut(s)	758, 790
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	5 cut(s)	294, 481, 652, 885, 893
FauI	CCCGC	1 cut(s)	715
Fnu4HI	GCNGC	4 cut(s)	6, 9, 324, 372
FokI	GGATG	3 cut(s)	236, 514, 574
Fsp4HI	GCNGC	4 cut(s)	6, 9, 324, 372
FspBI	CTAG	6 cut(s)	21, 65, 282, 609, 675, 866
GlaI	GCGC	3 cut(s)	25, 40, 629
GluI	GCNGC	4 cut(s)	6, 9, 324, 372
GsuI	CTGGAG	1 cut(s)	658
HaeII	RGCGCY	3 cut(s)	27, 42, 631
HaeIII	GGCC	2 cut(s)	371, 651
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	3 cut(s)	26, 41, 630
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	298, 485, 656, 889, 897
Hin6I	GCGC	3 cut(s)	24, 39, 628
HinP1I	GCGC	3 cut(s)	24, 39, 628
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	105, 492
Hpy188I	TCNGA	8 cut(s)	16, 279, 358, 420, 519, 661, 785, 930
Hpy188III	TCNNGA	4 cut(s)	295, 305, 307, 637
Hpy8I	GTNNAC	2 cut(s)	105, 492
Hpy99I	CGWCG	2 cut(s)	367, 536
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	4 cut(s)	118, 126, 259, 617
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	5 cut(s)	11, 191, 466, 728, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 377
HpyF3I	CTNAG	2 cut(s)	417, 658
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	298, 485, 656, 889, 897
HspAI	GCGC	3 cut(s)	24, 39, 628
KasI	GGCGCC	1 cut(s)	38
LmnI	GCTCC	2 cut(s)	92, 673
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	20, 546
MaeI	CTAG	6 cut(s)	21, 65, 282, 609, 675, 866
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	2 cut(s)	112, 611
MboII	GAAGA	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	902
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	3 cut(s)	52, 77, 350
MluNI	TGGCCA	1 cut(s)	651
Mly113I	GGCGCC	1 cut(s)	39
MmeI	TCCRAC	4 cut(s)	70, 302, 763, 824
MnlI	CCTC	3 cut(s)	480, 548, 854
Mox20I	TGGCCA	1 cut(s)	651
Mph1103I	ATGCAT	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	2 cut(s)	51, 819
MslI	CAYNNNNRTG	2 cut(s)	317, 905
Msp20I	TGGCCA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	454
MspR9I	CCNGG	2 cut(s)	151, 234
MvaI	CCWGG	2 cut(s)	151, 234
MwoI	GCNNNNNNNGC	2 cut(s)	17, 377
NarI	GGCGCC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	652
NheI	GCTAGC	1 cut(s)	20
NlaIII	CATG	5 cut(s)	298, 485, 656, 889, 897
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	2 cut(s)	485, 889
OliI	CACNNNNGTG	1 cut(s)	317
PaeR7I	CTCGAG	1 cut(s)	305
PagI	TCATGA	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	7, 10, 325, 373
PluTI	GGCGCC	1 cut(s)	42
PshBI	ATTAAT	1 cut(s)	51
Psp6I	CCWGG	2 cut(s)	149, 232
PspGI	CCWGG	2 cut(s)	149, 232
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	869
PstNI	CAGNNNCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	128, 491
RsaNI	GTAC	2 cut(s)	127, 490
RseI	CAYNNNNRTG	2 cut(s)	317, 905
SaqAI	TTAA	2 cut(s)	51, 819
SatI	GCNGC	4 cut(s)	6, 9, 324, 372
Sau96I	GGNCC	1 cut(s)	869
ScrFI	CCNGG	2 cut(s)	151, 234
SduI	GDGCHC	1 cut(s)	902
SfaNI	GCATC	2 cut(s)	20, 546
SfcI	CTRYAG	1 cut(s)	177
SfoI	GGCGCC	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	305
SinI	GGWCC	1 cut(s)	869
SlaI	CTCGAG	1 cut(s)	305
SmiMI	CAYNNNNRTG	2 cut(s)	317, 905
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	52, 77, 350
SsiI	CCGC	5 cut(s)	221, 372, 454, 722, 891
SspDI	GGCGCC	1 cut(s)	38
SspMI	CTAG	6 cut(s)	21, 65, 282, 609, 675, 866
StyD4I	CCNGG	2 cut(s)	149, 232
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	4 cut(s)	118, 126, 259, 617
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	2 cut(s)	306, 905
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	3 cut(s)	52, 77, 350
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	51, 819
Tru9I	TTAA	2 cut(s)	51, 819
TscAI	CASTG	4 cut(s)	123, 129, 499, 598
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	5, 8, 323
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	283, 678, 730, 936
TspRI	CASTG	4 cut(s)	123, 129, 499, 598
VpaK11BI	GGWCC	1 cut(s)	869
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	2 cut(s)	77, 350
XceI	RCATGY	2 cut(s)	485, 889
XhoI	CTCGAG	1 cut(s)	305
XspI	CTAG	6 cut(s)	21, 65, 282, 609, 675, 866
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.