Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012433

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Forward (+)

21571 .. 24011

Gene Structure 2441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12433g00040.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCGTTTCCATTGGCAACACCGAGATTAATTGGGACAAGCTTGATAAGACTAAATTTTATGTGGTTGGAGCTGGCTTGTTTACAGGGGTCACAGTGGCACTGTACCCAGTTTCCGTGGTGAAAACCCGCCTACAAGTTGCTTCCATAGATGCTCTAGAGAGAGATGCATTGTCTGTGGCCAAAGGCATTTGGAAAGCAGATGGTATTCCTGGTTTGTACAGAGGGTTTGGCACCATGATTACCGGCGCAGTTCCTGCCCGGATTATATTTCTCAGTGCTTTAGAGGCCACCAAGGTGGCTGCTTTCAAGATGGTTCAACCCTTAAAGTTATCTGAGGCTACAGAGGCAGCTTTTGCTAATGGAGTAGCCGGAATGACTGCCTCGCTTTTCGCTCAGTCTGTCTTTGTGCCCATTGACGTGATTAGTCAAAGGCTGATGGTGCAAGGTTATTCGGGCCATTCAAAGTACACCGGAGGGCTGGATGTTGCTCGTAAGGTGATCAAGTCGGATGGCATACGCGGACTTTATAGAGGGTTGGGACTTTCTGTTATGACTTACTCTCCATCTAGCGCTGTATGGTGGGCTAGTTATGGTTCAAGCCAGCGCTTAATCTGGAGTTTCTTAGGCCATGGAATTGGCTCTGAAGAAGCTGTTCCAAGTGTGGGGAATATAGTGTTGGTTCAAGCTGCTGGAGGAATTATTGCCGGTGCAACAGCATCCTGCATAACAACCCCATTGGATACCATCAAGACACGACTGCAGACGATGGGACATGACAAGAGACCTACTGCAAGAGAAGTTGTTAAGAACTTGATTAGAGATGATGGCTGGCAAGGTTTCTACAGAGGGCTGGGTCCAAGATTCTTCAGCATGTCTGCCTGGGGAACTTCGATGATATTGGCTTATGAATATCTGAAGCGCTTGTGTGCAAAAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

315

Amino Acids

33.69

Weight (kDa)

9.55

Isoelectric Point (pI)

22.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	1 cut(s)	522
AciI	CCGC	2 cut(s)	130, 522
AcoI	YGGCCR	2 cut(s)	3, 180
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	3 cut(s)	666, 853, 938
AfaI	GTAC	3 cut(s)	107, 221, 470
AfeI	AGCGCT	3 cut(s)	574, 608, 923
AfiI	CCNNNNNNNGG	1 cut(s)	665
AgsI	TTSAA	5 cut(s)	310, 320, 465, 600, 686
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	2 cut(s)	211, 881
AjuI	GAANNNNNNNTTGG	2 cut(s)	662, 694
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	5 cut(s)	43, 74, 353, 653, 689
AluI	AGCT	5 cut(s)	43, 74, 353, 653, 689
Alw26I	GTCTC	1 cut(s)	778
AlwNI	CAGNNNCTG	1 cut(s)	257
Aor51HI	AGCGCT	3 cut(s)	574, 608, 923
AoxI	GGCC	5 cut(s)	3, 180, 288, 457, 628
ApeKI	GCWGC	3 cut(s)	302, 350, 689
ApoI	RAATTY	1 cut(s)	56
AseI	ATTAAT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	4 cut(s)	251, 575, 609, 924
AspS9I	GGNCC	2 cut(s)	457, 857
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	2 cut(s)	133, 511
AvaII	GGWCC	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	289, 362, 676
BccI	CCATC	8 cut(s)	197, 307, 433, 506, 574, 755, 763, 821
BciT130I	CCWGG	2 cut(s)	213, 883
BciVI	GTATCC	1 cut(s)	736
BclI	TGATCA	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	778
BfaI	CTAG	3 cut(s)	158, 570, 588
BfmI	CTRYAG	3 cut(s)	342, 761, 844
BfoI	RGCGCY	3 cut(s)	576, 610, 925
BfuI	GTATCC	1 cut(s)	736
BisI	GCNGC	3 cut(s)	303, 351, 690
BlsI	GCNGC	3 cut(s)	304, 352, 691
Bme1390I	CCNGG	3 cut(s)	213, 262, 883
Bme18I	GGWCC	1 cut(s)	857
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	2 cut(s)	457, 857
BmiI	GGNNCC	2 cut(s)	235, 858
BmrFI	CCNGG	3 cut(s)	213, 262, 883
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	3 cut(s)	142, 157, 728
BmuI	ACTGGG	1 cut(s)	104
BpmI	CTGGAG	2 cut(s)	637, 714
BpuMI	CCSGG	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	778
BsaJI	CCNNGG	4 cut(s)	117, 294, 631, 882
BsaWI	WCCGGW	1 cut(s)	473
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse118I	RCCGGY	2 cut(s)	245, 707
Bse1I	ACTGG	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	213, 883
BseDI	CCNNGG	4 cut(s)	117, 294, 631, 882
BseGI	GGATG	3 cut(s)	490, 517, 719
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMII	CTCAG	3 cut(s)	289, 327, 410
BseNI	ACTGG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	289, 362, 676
BseYI	CCCAGC	1 cut(s)	853
Bsh1236I	CGCG	1 cut(s)	522
BshFI	GGCC	5 cut(s)	5, 182, 290, 459, 630
BshNI	GGYRCC	1 cut(s)	233
BsiSI	CCGG	5 cut(s)	246, 262, 372, 474, 708
BslFI	GGGAC	3 cut(s)	50, 555, 786
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmAI	GTCTC	1 cut(s)	778
BsmFI	GGGAC	3 cut(s)	50, 555, 786
BsnI	GGCC	5 cut(s)	5, 182, 290, 459, 630
Bso31I	GGTCTC	1 cut(s)	778
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	501
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	2 cut(s)	130, 522
BspANI	GGCC	5 cut(s)	5, 182, 290, 459, 630
BspCNI	CTCAG	3 cut(s)	288, 328, 409
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	235, 858
BspMAI	CTGCAG	1 cut(s)	765
BspT107I	GGYRCC	1 cut(s)	233
BspTNI	GGTCTC	1 cut(s)	778
BsrFI	RCCGGY	2 cut(s)	245, 707
BsrGI	TGTACA	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	2 cut(s)	245, 707
BssECI	CCNNGG	4 cut(s)	117, 294, 631, 882
BssMI	GATC	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	294, 631
Bst2UI	CCWGG	2 cut(s)	213, 883
Bst4CI	ACNGT	2 cut(s)	97, 105
BstAPI	GCANNNNNTGC	2 cut(s)	257, 356
BstAUI	TGTACA	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	76, 605, 833
BstDEI	CTNAG	4 cut(s)	275, 336, 396, 625
BstDSI	CCRYGG	2 cut(s)	117, 631
BstF5I	GGATG	3 cut(s)	490, 517, 719
BstFNI	CGCG	1 cut(s)	522
BstH2I	RGCGCY	3 cut(s)	576, 610, 925
BstHHI	GCGC	4 cut(s)	251, 575, 609, 924
BstKTI	GATC	1 cut(s)	504
BstMAI	GTCTC	1 cut(s)	778
BstMBI	GATC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 287, 347, 356, 442
BstNI	CCWGG	2 cut(s)	213, 883
BstNSI	RCATGY	1 cut(s)	877
BstSCI	CCNGG	3 cut(s)	211, 260, 881
BstSFI	CTRYAG	3 cut(s)	342, 761, 844
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	3 cut(s)	289, 362, 676
BstXI	CCANNNNNNTGG	2 cut(s)	298, 638
BsuI	GTATCC	1 cut(s)	736
BsuRI	GGCC	5 cut(s)	5, 182, 290, 459, 630
BtgI	CCRYGG	2 cut(s)	117, 631
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	3 cut(s)	490, 517, 719
BtsIMutI	CAGTG	3 cut(s)	101, 102, 283
Cac8I	GCNNGC	3 cut(s)	76, 605, 833
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	4 cut(s)	251, 575, 609, 924
Cfr10I	RCCGGY	2 cut(s)	245, 707
Cfr13I	GGNCC	2 cut(s)	457, 857
Csp6I	GTAC	3 cut(s)	106, 220, 469
CviAII	CATG	4 cut(s)	238, 632, 776, 874
CviQI	GTAC	3 cut(s)	106, 220, 469
DdeI	CTNAG	4 cut(s)	275, 336, 396, 625
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
EaeI	YGGCCR	2 cut(s)	3, 180
Eco130I	CCWWGG	2 cut(s)	294, 631
Eco31I	GGTCTC	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	857
Eco47III	AGCGCT	3 cut(s)	574, 608, 923
Eco57I	CTGAAG	3 cut(s)	666, 853, 938
EcoRII	CCWGG	2 cut(s)	211, 881
EcoT14I	CCWWGG	2 cut(s)	294, 631
EcoT22I	ATGCAT	1 cut(s)	172
ErhI	CCWWGG	2 cut(s)	294, 631
FaeI	CATG	4 cut(s)	241, 635, 779, 877
FaqI	GGGAC	3 cut(s)	50, 555, 786
FatI	CATG	4 cut(s)	237, 631, 775, 873
FauI	CCCGC	1 cut(s)	137
FbaI	TGATCA	1 cut(s)	501
Fnu4HI	GCNGC	3 cut(s)	303, 351, 690
FokI	GGATG	3 cut(s)	497, 524, 706
Fsp4HI	GCNGC	3 cut(s)	303, 351, 690
FspBI	CTAG	3 cut(s)	158, 570, 588
GlaI	GCGC	4 cut(s)	250, 574, 608, 923
GluI	GCNGC	3 cut(s)	303, 351, 690
GsaI	CCCAGC	1 cut(s)	857
GsuI	CTGGAG	2 cut(s)	637, 714
HaeII	RGCGCY	3 cut(s)	576, 610, 925
HaeIII	GGCC	5 cut(s)	5, 182, 290, 459, 630
HapII	CCGG	5 cut(s)	246, 262, 372, 474, 708
HhaI	GCGC	4 cut(s)	251, 575, 609, 924
Hin1II	CATG	4 cut(s)	241, 635, 779, 877
Hin6I	GCGC	4 cut(s)	249, 573, 607, 922
HinP1I	GCGC	4 cut(s)	249, 573, 607, 922
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	864
HpaII	CCGG	5 cut(s)	246, 262, 372, 474, 708
HphI	GGTGA	2 cut(s)	133, 511
Hpy166II	GTNNAC	2 cut(s)	84, 471
Hpy188I	TCNGA	4 cut(s)	337, 511, 646, 918
Hpy188III	TCNNGA	4 cut(s)	158, 310, 616, 751
Hpy8I	GTNNAC	2 cut(s)	84, 471
HpyCH4III	ACNGT	2 cut(s)	97, 105
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	7 cut(s)	170, 445, 713, 726, 763, 794, 932
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 287, 347, 356, 442
HpyF3I	CTNAG	4 cut(s)	275, 336, 396, 625
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	241, 635, 779, 877
HspAI	GCGC	4 cut(s)	249, 573, 607, 922
Ksp22I	TGATCA	1 cut(s)	501
Kzo9I	GATC	1 cut(s)	501
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	3 cut(s)	289, 362, 676
LweI	GCATC	3 cut(s)	142, 157, 728
MaeI	CTAG	3 cut(s)	158, 570, 588
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	1 cut(s)	503
MboI	GATC	1 cut(s)	501
MboII	GAAGA	2 cut(s)	659, 859
MhlI	GDGCHC	1 cut(s)	414
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	4 cut(s)	31, 56, 636, 699
MluNI	TGGCCA	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	49, 489
MnlI	CCTC	9 cut(s)	218, 280, 331, 340, 394, 470, 527, 689, 842
Mox20I	TGGCCA	1 cut(s)	182
Mph1103I	ATGCAT	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	182
MseI	TTAA	4 cut(s)	30, 326, 611, 807
MslI	CAYNNNNRTG	2 cut(s)	296, 419
Msp20I	TGGCCA	1 cut(s)	182
MspI	CCGG	5 cut(s)	246, 262, 372, 474, 708
MspR9I	CCNGG	3 cut(s)	213, 262, 883
MvaI	CCWGG	2 cut(s)	213, 883
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	5 cut(s)	257, 287, 347, 356, 442
NciI	CCSGG	1 cut(s)	262
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	1 cut(s)	501
NlaIII	CATG	4 cut(s)	241, 635, 779, 877
NlaIV	GGNNCC	2 cut(s)	235, 858
NmuCI	GTSAC	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	172
NspI	RCATGY	1 cut(s)	877
OliI	CACNNNNGTG	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	1 cut(s)	864
PkrI	GCNGC	3 cut(s)	304, 352, 691
PshBI	ATTAAT	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	211, 881
PspFI	CCCAGC	1 cut(s)	853
PspGI	CCWGG	2 cut(s)	211, 881
PspN4I	GGNNCC	2 cut(s)	235, 858
PspPI	GGNCC	2 cut(s)	457, 857
PstI	CTGCAG	1 cut(s)	765
PstNI	CAGNNNCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	107, 221, 470
RsaNI	GTAC	3 cut(s)	106, 220, 469
RseI	CAYNNNNRTG	2 cut(s)	296, 419
SaqAI	TTAA	4 cut(s)	30, 326, 611, 807
SatI	GCNGC	3 cut(s)	303, 351, 690
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	2 cut(s)	457, 857
ScrFI	CCNGG	3 cut(s)	213, 262, 883
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	3 cut(s)	142, 157, 728
SfcI	CTRYAG	3 cut(s)	342, 761, 844
SinI	GGWCC	1 cut(s)	857
SmiMI	CAYNNNNRTG	2 cut(s)	296, 419
Sse9I	AATT	4 cut(s)	31, 56, 636, 699
SsiI	CCGC	2 cut(s)	130, 522
SspMI	CTAG	3 cut(s)	158, 570, 588
StyD4I	CCNGG	3 cut(s)	211, 260, 881
StyI	CCWWGG	2 cut(s)	294, 631
TaaI	ACNGT	2 cut(s)	97, 105
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	1 cut(s)	893
TasI	AATT	4 cut(s)	31, 56, 636, 699
TatI	WGTACW	2 cut(s)	219, 468
TfiI	GAWTC	1 cut(s)	864
Tru1I	TTAA	4 cut(s)	30, 326, 611, 807
Tru9I	TTAA	4 cut(s)	30, 326, 611, 807
TscAI	CASTG	3 cut(s)	102, 108, 283
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	3 cut(s)	302, 350, 689
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	924
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	3 cut(s)	102, 108, 283
VpaK11BI	GGWCC	1 cut(s)	857
VspI	ATTAAT	1 cut(s)	30
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	157
XceI	RCATGY	1 cut(s)	877
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	3 cut(s)	158, 570, 588
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.