Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Forward (+)

74144123 .. 74147122

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG563200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGACTGCTCTCGAGACCACAAAGGTGGCTGCTTTCAAGTTGGTTGAGCCATTCAAATTTTCTGAACCGACGCAGGCCGCTTTGGCTAATGGACTGGCTGGAATGACTGCTTCGCTTTTCTCTCAGACCATCTTTGTTCCTATTGATGTGGTTAGTCAACGGTTGATGGTGCAAGGCTATTCAGGGCATGCAAGGTACACTGGGGGGATGGACGTTGCTCGTCAGATTTTGAAGACAGACGGCATCAGGGGATTTTATAGAGGATTTGGACTTTCCATTATGACCTACTCTCCATCCAGTGCTGTATGGTGGGCTAGTTACGGTTCAAGCCAGCGCCTAATCTGGAGTTTCTTAGGCCATGGCTCAGATGAAGCTCCCCCTAGCGTGGGGAAAATAATGTCAGTTCAAGCTACTGGTGGGATTATTGCGGGTGCAACAGCTTCCTTCATAACAACTCCTTTGGACACAATCAAGACACGCTTACAGGTCGGACACGAAAAGAGACCCACTACAAGTGAAGTTATTAAAAGCTTGATTAGAGATGATGGTTGGAAAGGTTTTTACAGGGGACTAGGTCCAAGATTTTTCAGCATGTCCGCATGGGGCACTTCGATGATATTGGCTTATGAATATCTGAGTATGGGCTCTTACCTTTATGCTGCCTTATTACACTTGGGTCTCCTTCTCAAGATATTTTTGTTACATCATGTTTACCCGAAATGGTTCAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

244

Amino Acids

26.85

Weight (kDa)

9.66

Isoelectric Point (pI)

22.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	27 - 114	1.5e-21	Mitochondrial carrier protein
Mito_carr	PF00153	136 - 212	2.8e-18	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	78, 428, 597
AcsI	RAATTY	1 cut(s)	56
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	385, 386
AgsI	TTSAA	6 cut(s)	37, 55, 232, 327, 407, 727
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	4 cut(s)	374, 410, 440, 531
AluI	AGCT	4 cut(s)	374, 410, 440, 531
Alw26I	GTCTC	3 cut(s)	8, 496, 683
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	75, 355
ApeKI	GCWGC	2 cut(s)	29, 659
ApoI	RAATTY	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	722
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	575
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	647
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	16, 646
BccI	CCATC	5 cut(s)	137, 160, 202, 301, 539
BceAI	ACGGC	1 cut(s)	256
BcoDI	GTCTC	3 cut(s)	8, 496, 683
BfaI	CTAG	4 cut(s)	315, 381, 572, 733
BfoI	RGCGCY	1 cut(s)	337
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	3 cut(s)	30, 78, 660
BlsI	GCNGC	3 cut(s)	31, 79, 661
Bme18I	GGWCC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	575
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	364
BpuEI	CTTGAG	1 cut(s)	671
BsaI	GGTCTC	3 cut(s)	8, 496, 683
BsaJI	CCNNGG	1 cut(s)	358
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 386
Bse1I	ACTGG	4 cut(s)	99, 205, 297, 418
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	213, 293
BseLI	CCNNNNNNNGG	2 cut(s)	385, 386
BseMII	CTCAG	3 cut(s)	137, 378, 626
BseNI	ACTGG	4 cut(s)	99, 205, 297, 418
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	16, 646
BshFI	GGCC	2 cut(s)	77, 357
BsiHKCI	CYCGRG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	2 cut(s)	385, 386
BsmAI	GTCTC	3 cut(s)	8, 496, 683
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	77, 357
Bso31I	GGTCTC	3 cut(s)	8, 496, 683
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	608, 647
Bsp19I	CCATGG	1 cut(s)	358
BspACI	CCGC	3 cut(s)	78, 428, 597
BspANI	GGCC	2 cut(s)	77, 357
BspCNI	CTCAG	3 cut(s)	136, 377, 627
BspTNI	GGTCTC	3 cut(s)	8, 496, 683
BsrI	ACTGG	4 cut(s)	99, 205, 297, 418
BssECI	CCNNGG	1 cut(s)	358
BssT1I	CCWWGG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	162, 323
BstC8I	GCNNGC	3 cut(s)	75, 189, 332
BstDEI	CTNAG	4 cut(s)	123, 352, 364, 635
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	213, 293
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstMAI	GTCTC	3 cut(s)	8, 496, 683
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	191, 595
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	2 cut(s)	16, 646
BstV2I	GAAGAC	1 cut(s)	239
BstXI	CCANNNNNNTGG	1 cut(s)	25
BsuRI	GGCC	2 cut(s)	77, 357
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	213, 293
BtsIMutI	CAGTG	2 cut(s)	198, 304
Cac8I	GCNNGC	3 cut(s)	75, 189, 332
CfoI	GCGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	5 cut(s)	188, 359, 592, 600, 707
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	4 cut(s)	123, 352, 364, 635
Eco130I	CCWWGG	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	647
Eco31I	GGTCTC	3 cut(s)	8, 496, 683
Eco47I	GGWCC	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	5 cut(s)	191, 362, 595, 603, 710
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	5 cut(s)	187, 358, 591, 599, 706
FauI	CCCGC	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	30, 78, 660
FokI	GGATG	2 cut(s)	220, 280
FriOI	GRGCYC	1 cut(s)	647
Fsp4HI	GCNGC	3 cut(s)	30, 78, 660
FspBI	CTAG	4 cut(s)	315, 381, 572, 733
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	3 cut(s)	30, 78, 660
GsuI	CTGGAG	1 cut(s)	364
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	2 cut(s)	77, 357
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	5 cut(s)	191, 362, 595, 603, 710
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	529
Hpy166II	GTNNAC	3 cut(s)	158, 198, 712
Hpy188I	TCNGA	6 cut(s)	64, 126, 225, 367, 491, 636
Hpy188III	TCNNGA	5 cut(s)	11, 13, 343, 472, 688
Hpy8I	GTNNAC	3 cut(s)	158, 198, 712
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	454, 692
HpyCH4III	ACNGT	2 cut(s)	162, 323
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	172, 191, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	4 cut(s)	123, 352, 364, 635
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	191, 362, 595, 603, 710
HspAI	GCGC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	16, 646
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	4 cut(s)	315, 381, 572, 733
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	317, 699
MboII	GAAGA	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	608, 647
MluCI	AATT	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	469, 530
MnlI	CCTC	1 cut(s)	254
MroXI	GAANNNNTTC	1 cut(s)	722
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	2 cut(s)	23, 611
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	358
NlaIII	CATG	5 cut(s)	191, 362, 595, 603, 710
NspI	RCATGY	2 cut(s)	191, 595
OliI	CACNNNNGTG	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	722
PflFI	GACNNNGTC	1 cut(s)	573
PkrI	GCNGC	3 cut(s)	31, 79, 661
PspPI	GGNCC	1 cut(s)	575
PsyI	GACNNNGTC	1 cut(s)	573
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	2 cut(s)	23, 611
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	3 cut(s)	30, 78, 660
Sau96I	GGNCC	1 cut(s)	575
SduI	GDGCHC	2 cut(s)	608, 647
SfaNI	GCATC	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	575
SlaI	CTCGAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	2 cut(s)	23, 611
SmlI	CTYRAG	2 cut(s)	11, 686
SmoI	CTYRAG	2 cut(s)	11, 686
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	1 cut(s)	56
SsiI	CCGC	3 cut(s)	78, 428, 597
SspMI	CTAG	4 cut(s)	315, 381, 572, 733
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	162, 323
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	12, 611
TasI	AATT	1 cut(s)	56
TauI	GCSGC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	2 cut(s)	205, 304
TseI	GCWGC	2 cut(s)	29, 659
TspDTI	ATGAA	3 cut(s)	384, 436, 642
TspRI	CASTG	2 cut(s)	205, 304
Tth111I	GACNNNGTC	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	2 cut(s)	191, 595
XhoI	CTCGAG	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	4 cut(s)	315, 381, 572, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.