Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Forward (+)

24090916 .. 24094211

Gene Structure 3296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G250600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTGCGCCCAACTCCATTGGCAACACCGAAATCAATTGGGACAAGCTTGATAAGACTAAATTTTATGTGGTTGGAGCTGGCTTGTTTACAGGGGTCACAGTGGCACTGTACCCGGTTTCTGTTGTGAAAACCAGGCTTCAAGTTGCTTCCAAAGATGCTCTGGAGAGGGATACATTTTCTGTGGTTAGAGGCATTTTGAAAGCAGATGGTATTCCTGGTTTGTACAGAGGTTTTGGCACTGTAATCACTGGTGCAATTCCTGCTAGGATTATATTTCTCACTGCTTTGGAGACCACCAAGGTGGCTGCTTTCAAGATGGTTGAGCCCTTCAAGTTATCTGAGCCTACAGAGGCAGCTTTGGCTAATGGACTAGCTGGGATGACCGCCTCACTTTTCTCTCAGGCTGTGTTTGTCCCTATTGATGTGATTAGTCAAAGATTGATGGTGCAAGGGTATTCGGGCCATGCAAAGTACAGCGGGGGGATGGATGTTGCTCGTAAAGTTATAAAGTCAGATGGCATCCGGGGATTGTATAGAGGGTTTGGACTTTCTGTTATGACTTACTCTCCATCTAGCGCTGTATGGTGGGCTAGTTATGGTTCAAGCCAGCGCTTAATCTGGAGTTTCTTAGGCCAGGGAAGTGGTTCTGATGAAGCTGTTCCTGGCTTGGGGAAAATAGTGTTGGTTCAAGCTGCTGGAGGAATTGTTGCAGGTGCAACAGCATCCTGCATAACAACCCCATTGGATACCATAAAGACTCGGTTACAGGTGATGGGACACGAAAAGAGACCCACTGCAAGAGAAGTTGTTAAAGGCTTGATAAGAGATGATGGCTGGAAAGGTTTCTACAGAGGGCTAGGTCCAAGATTTTTCAGCATGTCAGCCTGGGGCACGTCAATGATATTGGCTTATGAATATCTGAAGCGCTTGTGTGCAAAAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

317

Amino Acids

33.91

Weight (kDa)

9.65

Isoelectric Point (pI)

19.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	509
AarI	CACCTGC	1 cut(s)	704
Acc36I	ACCTGC	1 cut(s)	704
AciI	CCGC	2 cut(s)	387, 480
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	944
AfaI	GTAC	3 cut(s)	113, 227, 476
AfeI	AGCGCT	3 cut(s)	580, 614, 929
AfiI	CCNNNNNNNGG	1 cut(s)	671
AgsI	TTSAA	6 cut(s)	143, 202, 316, 334, 606, 692
AjiI	CACGTC	1 cut(s)	897
AjnI	CCWGG	5 cut(s)	134, 217, 636, 664, 887
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	6 cut(s)	49, 80, 359, 377, 659, 695
AluI	AGCT	6 cut(s)	49, 80, 359, 377, 659, 695
Alw26I	GTCTC	2 cut(s)	287, 784
Aor51HI	AGCGCT	3 cut(s)	580, 614, 929
AoxI	GGCC	2 cut(s)	463, 634
ApeKI	GCWGC	4 cut(s)	5, 308, 356, 695
ApoI	RAATTY	1 cut(s)	62
Asp700I	GAANNNNTTC	3 cut(s)	646, 660, 845
AspLEI	GCGC	4 cut(s)	10, 581, 615, 930
AspS9I	GGNCC	2 cut(s)	463, 863
AsuC2I	CCSGG	2 cut(s)	116, 527
AsuHPI	GGTGA	1 cut(s)	784
AvaII	GGWCC	1 cut(s)	863
BaeGI	GKGCMC	1 cut(s)	896
BanII	GRGCYC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	295, 368, 682
BccI	CCATC	8 cut(s)	203, 313, 439, 481, 512, 580, 769, 827
BciT130I	CCWGG	5 cut(s)	136, 219, 638, 666, 889
BciVI	GTATCC	2 cut(s)	166, 742
BcnI	CCSGG	2 cut(s)	116, 527
BcoDI	GTCTC	2 cut(s)	287, 784
BfaI	CTAG	5 cut(s)	267, 374, 576, 594, 860
BfmI	CTRYAG	2 cut(s)	348, 850
BfoI	RGCGCY	3 cut(s)	582, 616, 931
BfuAI	ACCTGC	1 cut(s)	704
BfuI	GTATCC	2 cut(s)	166, 742
BisI	GCNGC	4 cut(s)	6, 309, 357, 696
BlsI	GCNGC	4 cut(s)	7, 310, 358, 697
Bme1390I	CCNGG	7 cut(s)	116, 136, 219, 527, 638, 666, 889
Bme18I	GGWCC	1 cut(s)	863
BmgBI	CACGTC	1 cut(s)	897
BmgT120I	GGNCC	2 cut(s)	463, 863
BmrFI	CCNGG	7 cut(s)	116, 136, 219, 527, 638, 666, 889
BmsI	GCATC	3 cut(s)	148, 531, 734
BpmI	CTGGAG	3 cut(s)	185, 643, 720
BpuMI	CCSGG	2 cut(s)	116, 527
BsaI	GGTCTC	2 cut(s)	287, 784
BsaJI	CCNNGG	4 cut(s)	300, 526, 637, 888
BsaXI	ACNNNNNCTCC	4 cut(s)	553, 583, 693, 723
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse1I	ACTGG	1 cut(s)	256
BseBI	CCWGG	5 cut(s)	136, 219, 638, 666, 889
BseDI	CCNNGG	4 cut(s)	300, 526, 637, 888
BseGI	GGATG	5 cut(s)	387, 492, 496, 522, 725
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMII	CTCAG	2 cut(s)	333, 416
BseNI	ACTGG	1 cut(s)	256
BseSI	GKGCMC	1 cut(s)	896
BseXI	GCAGC	3 cut(s)	295, 368, 682
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	2 cut(s)	465, 636
BsiSI	CCGG	2 cut(s)	116, 526
BslFI	GGGAC	3 cut(s)	56, 401, 792
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	2 cut(s)	287, 784
BsmFI	GGGAC	3 cut(s)	56, 401, 792
BsnI	GGCC	2 cut(s)	465, 636
Bso31I	GGTCTC	2 cut(s)	287, 784
Bsp1286I	GDGCHC	2 cut(s)	330, 896
Bsp1407I	TGTACA	1 cut(s)	225
BspACI	CCGC	2 cut(s)	387, 480
BspANI	GGCC	2 cut(s)	465, 636
BspCNI	CTCAG	2 cut(s)	334, 415
BspMI	ACCTGC	1 cut(s)	704
BspTNI	GGTCTC	2 cut(s)	287, 784
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	4 cut(s)	300, 526, 637, 888
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	5 cut(s)	136, 219, 638, 666, 889
Bst4CI	ACNGT	3 cut(s)	103, 111, 244
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	82, 611
BstDEI	CTNAG	3 cut(s)	342, 402, 631
BstF5I	GGATG	5 cut(s)	387, 492, 496, 522, 725
BstH2I	RGCGCY	3 cut(s)	582, 616, 931
BstHHI	GCGC	4 cut(s)	10, 581, 615, 930
BstMAI	GTCTC	2 cut(s)	287, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 362
BstNI	CCWGG	5 cut(s)	136, 219, 638, 666, 889
BstNSI	RCATGY	1 cut(s)	883
BstSCI	CCNGG	7 cut(s)	114, 134, 217, 525, 636, 664, 887
BstSFI	CTRYAG	2 cut(s)	348, 850
BstSLI	GKGCMC	1 cut(s)	896
BstV1I	GCAGC	3 cut(s)	295, 368, 682
BstXI	CCANNNNNNTGG	2 cut(s)	304, 644
BsuI	GTATCC	2 cut(s)	166, 742
BsuRI	GGCC	2 cut(s)	465, 636
BtrI	CACGTC	1 cut(s)	897
BtsCI	GGATG	5 cut(s)	387, 492, 496, 522, 725
BtsI	GCAGTG	2 cut(s)	282, 795
BtsIMutI	CAGTG	6 cut(s)	107, 108, 240, 249, 282, 795
BveI	ACCTGC	1 cut(s)	704
Cac8I	GCNNGC	2 cut(s)	82, 611
CfoI	GCGC	4 cut(s)	10, 581, 615, 930
Cfr13I	GGNCC	2 cut(s)	463, 863
Csp6I	GTAC	3 cut(s)	112, 226, 475
CviAII	CATG	2 cut(s)	467, 880
CviQI	GTAC	3 cut(s)	112, 226, 475
DdeI	CTNAG	3 cut(s)	342, 402, 631
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	2 cut(s)	287, 784
Eco47I	GGWCC	1 cut(s)	863
Eco47III	AGCGCT	3 cut(s)	580, 614, 929
Eco57I	CTGAAG	1 cut(s)	944
EcoRII	CCWGG	5 cut(s)	134, 217, 636, 664, 887
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	470, 883
FaqI	GGGAC	3 cut(s)	56, 401, 792
FatI	CATG	2 cut(s)	466, 879
FauI	CCCGC	1 cut(s)	473
Fnu4HI	GCNGC	4 cut(s)	6, 309, 357, 696
FokI	GGATG	5 cut(s)	394, 499, 503, 509, 712
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	4 cut(s)	6, 309, 357, 696
FspBI	CTAG	5 cut(s)	267, 374, 576, 594, 860
GlaI	GCGC	4 cut(s)	9, 580, 614, 929
GluI	GCNGC	4 cut(s)	6, 309, 357, 696
GsaI	CCCAGC	1 cut(s)	381
GsuI	CTGGAG	3 cut(s)	185, 643, 720
HaeII	RGCGCY	3 cut(s)	582, 616, 931
HaeIII	GGCC	2 cut(s)	465, 636
HapII	CCGG	2 cut(s)	116, 526
HhaI	GCGC	4 cut(s)	10, 581, 615, 930
Hin1II	CATG	2 cut(s)	470, 883
Hin6I	GCGC	4 cut(s)	8, 579, 613, 928
HinP1I	GCGC	4 cut(s)	8, 579, 613, 928
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	760
HpaII	CCGG	2 cut(s)	116, 526
HphI	GGTGA	1 cut(s)	784
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	343, 517, 652, 924
Hpy188III	TCNNGA	3 cut(s)	164, 316, 622
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	3 cut(s)	103, 111, 244
HpyCH4IV	ACGT	1 cut(s)	896
HpyCH4V	TGCA	8 cut(s)	257, 451, 470, 713, 719, 732, 800, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 362
HpyF3I	CTNAG	3 cut(s)	342, 402, 631
HpySE526I	ACGT	1 cut(s)	896
Hsp92II	CATG	2 cut(s)	470, 883
HspAI	GCGC	4 cut(s)	8, 579, 613, 928
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	3 cut(s)	295, 368, 682
LweI	GCATC	3 cut(s)	148, 531, 734
MaeI	CTAG	5 cut(s)	267, 374, 576, 594, 860
MaeII	ACGT	1 cut(s)	896
MaeIII	GTNAC	2 cut(s)	97, 765
MfeI	CAATTG	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	330, 896
MluCI	AATT	4 cut(s)	37, 62, 258, 705
MlyI	GAGTC	1 cut(s)	754
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	8 cut(s)	162, 185, 224, 346, 400, 533, 695, 848
MroXI	GAANNNNTTC	3 cut(s)	646, 660, 845
MseI	TTAA	2 cut(s)	617, 813
MslI	CAYNNNNRTG	2 cut(s)	302, 899
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	2 cut(s)	116, 526
MspR9I	CCNGG	7 cut(s)	116, 136, 219, 527, 638, 666, 889
MunI	CAATTG	1 cut(s)	37
MvaI	CCWGG	5 cut(s)	136, 219, 638, 666, 889
MwoI	GCNNNNNNNGC	2 cut(s)	263, 362
NciI	CCSGG	2 cut(s)	116, 527
NlaIII	CATG	2 cut(s)	470, 883
NmuCI	GTSAC	1 cut(s)	97
NspI	RCATGY	1 cut(s)	883
OliI	CACNNNNGTG	1 cut(s)	302
PaqCI	CACCTGC	1 cut(s)	704
PdmI	GAANNNNTTC	3 cut(s)	646, 660, 845
PkrI	GCNGC	4 cut(s)	7, 310, 358, 697
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
PsiI	TTATAA	1 cut(s)	509
Psp6I	CCWGG	5 cut(s)	134, 217, 636, 664, 887
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	5 cut(s)	134, 217, 636, 664, 887
PspPI	GGNCC	2 cut(s)	463, 863
RsaI	GTAC	3 cut(s)	113, 227, 476
RsaNI	GTAC	3 cut(s)	112, 226, 475
RseI	CAYNNNNRTG	2 cut(s)	302, 899
SaqAI	TTAA	2 cut(s)	617, 813
SatI	GCNGC	4 cut(s)	6, 309, 357, 696
Sau96I	GGNCC	2 cut(s)	463, 863
SchI	GAGTC	1 cut(s)	754
ScrFI	CCNGG	7 cut(s)	116, 136, 219, 527, 638, 666, 889
SduI	GDGCHC	2 cut(s)	330, 896
SfaNI	GCATC	3 cut(s)	148, 531, 734
SfcI	CTRYAG	2 cut(s)	348, 850
SinI	GGWCC	1 cut(s)	863
SmiMI	CAYNNNNRTG	2 cut(s)	302, 899
Sse9I	AATT	4 cut(s)	37, 62, 258, 705
SsiI	CCGC	2 cut(s)	387, 480
SspMI	CTAG	5 cut(s)	267, 374, 576, 594, 860
StyD4I	CCNGG	7 cut(s)	114, 134, 217, 525, 636, 664, 887
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	3 cut(s)	103, 111, 244
TaiI	ACGT	1 cut(s)	899
TasI	AATT	4 cut(s)	37, 62, 258, 705
TatI	WGTACW	2 cut(s)	225, 474
Tru1I	TTAA	2 cut(s)	617, 813
Tru9I	TTAA	2 cut(s)	617, 813
TscAI	CASTG	6 cut(s)	108, 114, 247, 256, 289, 802
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	4 cut(s)	5, 308, 356, 695
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	669, 930
TspRI	CASTG	6 cut(s)	108, 114, 247, 256, 289, 802
VpaK11BI	GGWCC	1 cut(s)	863
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	1 cut(s)	883
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XmnI	GAANNNNTTC	3 cut(s)	646, 660, 845
XspI	CTAG	5 cut(s)	267, 374, 576, 594, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.