Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009442

Physical Location & Seq

Genomic Coordinates Forward (+)

35479696 .. 35482574

Gene Structure 2879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46540.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTGCTGCGTCCCAACCCATTGGCCATACCGAGATTAACTGGGACAAGCTAGATAAGACTAAATTTTATGTGGTTGGAGCTGGATTGTTTACAGGGGTCACAGTGGCACTGTACCCAGTTTCTGTTGTGAAAACCAGGCTGCAAGTTGCTACAAGAGAATCTGTAGAGAGGAATGCATTGTCTGTGATCAAAGGCATTTGGAAAGCGGACGGTGTTCCTGGTTTGTATAGAGGGTTTGGTACGGTTATAACTGGGGCTGTTCCGACTAGGGTTTTATTCATGACTGCGCTCGAGACAACAAAGGTGGCTGCTTTCAAATTGGTTGAGCCATTCAAGTTTTCTGAGCCGATGCAGGCCGCTTTGGCTAATGGACTGGCTGGAATGACCGCCTCGCTTTTTTCTCAGACCATCTTTGTTCCTATTGATGTGGTTAGTCAACGGTTGATGGTGCAAGGCTATTCAGGGCATGCAAGGTACACTGGGGGGATGGACGTTGCTCGTCAGATATTGAAGACCGATGGCATCAGGGGGTTTTATAGAGGATTTGGACTTTCCATTATGACCTACTCTCCATCCAGTGCTGTATGGTGGGCTAGTTACGGTTCAAGCCAGCGCCTAATCTGGAGTTTCTTAGCCCATGGCTCAGACGAAGCTCCCCCTAGCGTGGGGAAAATAATGTCTGTTCAAGCTACTGGTGGTATCATTGCGGGTGCAACAGCTTCCTGCATAACAACCCCTTTAGACACAATCAAGACACGCTTACAGGTATTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0016020 GO:0016021 GO:0019866 GO:0019867 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098573 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

260

Amino Acids

27.75

Weight (kDa)

9.74

Isoelectric Point (pI)

21.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	28 - 103	1.4e-14	Mitochondrial carrier protein
Mito_carr	PF00153	121 - 208	3.3e-21	Mitochondrial carrier protein
Mito_carr	PF00153	230 - 312	1.4e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15640 AT5G15640
fragaria_vesca	FvH4_6g46540 FvH4_6g46540 FvH4_6g46540 FvH4_6g46540
malus_domestica	MD09G1072700.v1.1 MD17G1063900.v1.1
prunus_persica	Prupe.3G250600_v2.0.a1
pyrus_communis	pycom12433g00040 pycom17g06420
rosa_chinensis	RchiOBHm_Chr2g0165181
rosa_laevigata	RLG00000021514
rosa_multiflora	Rmu_sc0001097.1_g000044
rosa_roxburghii	Rroxscaffold_2G00085960
rosa_rugosa	Rorug02G0513000
rosa_samantha	Rh2AG581200 Rh2BG592500 Rh2CG563200 Rh2DG602500
rosa_wichuraiana	Rw0G008420 Rw2G048270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AciI	CCGC	4 cut(s)	209, 360, 390, 710
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	1 cut(s)	65
AfaI	GTAC	3 cut(s)	116, 244, 479
AfiI	CCNNNNNNNGG	2 cut(s)	667, 668
AgsI	TTSAA	5 cut(s)	319, 337, 514, 609, 689
AjnI	CCWGG	2 cut(s)	137, 220
AluBI	AGCT	5 cut(s)	52, 83, 656, 692, 722
AluI	AGCT	5 cut(s)	52, 83, 656, 692, 722
Alw26I	GTCTC	1 cut(s)	290
AlwNI	CAGNNNCTG	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	293
AoxI	GGCC	2 cut(s)	25, 357
ApeKI	GCWGC	4 cut(s)	5, 8, 142, 311
ApoI	RAATTY	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	292, 618
AvaI	CYCGRG	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	129, 298
BccI	CCATC	5 cut(s)	419, 442, 484, 515, 583
BciT130I	CCWGG	2 cut(s)	139, 222
BclI	TGATCA	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	4 cut(s)	53, 270, 597, 663
BfmI	CTRYAG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	619
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	5 cut(s)	6, 9, 143, 312, 360
BlsI	GCNGC	5 cut(s)	7, 10, 144, 313, 361
Bme1390I	CCNGG	2 cut(s)	139, 222
BmeT110I	CYCGRG	1 cut(s)	293
BmrFI	CCNGG	2 cut(s)	139, 222
BmrI	ACTGGG	4 cut(s)	52, 113, 264, 492
BmsI	GCATC	2 cut(s)	342, 534
BmuI	ACTGGG	4 cut(s)	52, 113, 264, 492
BpiI	GAAGAC	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	646
BsaJI	CCNNGG	1 cut(s)	640
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bsc4I	CCNNNNNNNGG	2 cut(s)	667, 668
Bse1I	ACTGG	7 cut(s)	47, 119, 259, 381, 487, 579, 700
Bse3DI	GCAATG	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	139, 222
BseDI	CCNNGG	1 cut(s)	640
BseGI	GGATG	2 cut(s)	495, 575
BseLI	CCNNNNNNNGG	2 cut(s)	667, 668
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	3 cut(s)	336, 419, 660
BseNI	ACTGG	7 cut(s)	47, 119, 259, 381, 487, 579, 700
BseXI	GCAGC	2 cut(s)	129, 298
BshFI	GGCC	2 cut(s)	27, 359
BsiHKCI	CYCGRG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	667, 668
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	27, 359
BsoBI	CYCGRG	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	640
BspACI	CCGC	4 cut(s)	209, 360, 390, 710
BspANI	GGCC	2 cut(s)	27, 359
BspCNI	CTCAG	3 cut(s)	337, 418, 659
BspHI	TCATGA	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	705
BsrI	ACTGG	7 cut(s)	47, 119, 259, 381, 487, 579, 700
BssECI	CCNNGG	1 cut(s)	640
BssMI	GATC	1 cut(s)	189
BssT1I	CCWWGG	1 cut(s)	640
Bst2UI	CCWGG	2 cut(s)	139, 222
Bst4CI	ACNGT	6 cut(s)	106, 114, 215, 247, 444, 605
BstC8I	GCNNGC	3 cut(s)	357, 471, 614
BstDEI	CTNAG	4 cut(s)	345, 405, 634, 646
BstDSI	CCRYGG	1 cut(s)	640
BstF5I	GGATG	2 cut(s)	495, 575
BstH2I	RGCGCY	1 cut(s)	619
BstHHI	GCGC	2 cut(s)	292, 618
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	2 cut(s)	139, 222
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	137, 220
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	129, 298
BstV2I	GAAGAC	1 cut(s)	521
BstXI	CCANNNNNNTGG	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	27, 359
BtgI	CCRYGG	1 cut(s)	640
BtsCI	GGATG	2 cut(s)	495, 575
BtsIMutI	CAGTG	4 cut(s)	110, 111, 480, 586
Cac8I	GCNNGC	3 cut(s)	357, 471, 614
CaiI	CAGNNNCTG	1 cut(s)	125
CciI	TCATGA	1 cut(s)	282
CfoI	GCGC	2 cut(s)	292, 618
Csp6I	GTAC	3 cut(s)	115, 243, 478
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	3 cut(s)	283, 470, 641
CviQI	GTAC	3 cut(s)	115, 243, 478
DdeI	CTNAG	4 cut(s)	345, 405, 634, 646
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	25
Eco130I	CCWWGG	1 cut(s)	640
Eco88I	CYCGRG	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	137, 220
EcoT14I	CCWWGG	1 cut(s)	640
EcoT22I	ATGCAT	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	640
FaeI	CATG	3 cut(s)	286, 473, 644
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	282, 469, 640
FauI	CCCGC	1 cut(s)	703
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	6, 9, 143, 312, 360
FokI	GGATG	2 cut(s)	502, 562
Fsp4HI	GCNGC	5 cut(s)	6, 9, 143, 312, 360
FspBI	CTAG	4 cut(s)	53, 270, 597, 663
GlaI	GCGC	2 cut(s)	291, 617
GluI	GCNGC	5 cut(s)	6, 9, 143, 312, 360
GsuI	CTGGAG	1 cut(s)	646
HaeII	RGCGCY	1 cut(s)	619
HaeIII	GGCC	2 cut(s)	27, 359
HhaI	GCGC	2 cut(s)	292, 618
Hin1II	CATG	3 cut(s)	286, 473, 644
Hin6I	GCGC	2 cut(s)	290, 616
HinP1I	GCGC	2 cut(s)	290, 616
HincII	GTYRAC	1 cut(s)	440
HindII	GTYRAC	1 cut(s)	440
HinfI	GANTC	1 cut(s)	161
Hpy166II	GTNNAC	3 cut(s)	93, 440, 480
Hpy188I	TCNGA	5 cut(s)	267, 346, 408, 507, 649
Hpy188III	TCNNGA	4 cut(s)	283, 295, 625, 754
Hpy8I	GTNNAC	3 cut(s)	93, 440, 480
HpyCH4III	ACNGT	6 cut(s)	106, 114, 215, 247, 444, 605
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	7 cut(s)	145, 179, 355, 454, 473, 716, 729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	4 cut(s)	345, 405, 634, 646
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	3 cut(s)	286, 473, 644
HspAI	GCGC	2 cut(s)	290, 616
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	80, 661
Lsp1109I	GCAGC	2 cut(s)	129, 298
LweI	GCATC	2 cut(s)	342, 534
MaeI	CTAG	4 cut(s)	53, 270, 597, 663
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	2 cut(s)	100, 599
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	526
MlsI	TGGCCA	1 cut(s)	27
MluCI	AATT	2 cut(s)	65, 320
MluNI	TGGCCA	1 cut(s)	27
MmeI	TCCRAC	2 cut(s)	58, 290
MnlI	CCTC	4 cut(s)	165, 227, 403, 536
Mox20I	TGGCCA	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	27
MseI	TTAA	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	139, 222
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	2 cut(s)	139, 222
MwoI	GCNNNNNNNGC	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	640
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	3 cut(s)	286, 473, 644
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PaeR7I	CTCGAG	1 cut(s)	293
PagI	TCATGA	1 cut(s)	282
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	7, 10, 144, 313, 361
PsiI	TTATAA	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	137, 220
PspGI	CCWGG	2 cut(s)	137, 220
PstNI	CAGNNNCTG	1 cut(s)	125
RsaI	GTAC	3 cut(s)	116, 244, 479
RsaNI	GTAC	3 cut(s)	115, 243, 478
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	5 cut(s)	6, 9, 143, 312, 360
Sau3AI	GATC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	139, 222
SfaNI	GCATC	2 cut(s)	342, 534
SfcI	CTRYAG	1 cut(s)	165
Sfr274I	CTCGAG	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	2 cut(s)	65, 320
SsiI	CCGC	4 cut(s)	209, 360, 390, 710
SspMI	CTAG	4 cut(s)	53, 270, 597, 663
StyD4I	CCNGG	2 cut(s)	137, 220
StyI	CCWWGG	1 cut(s)	640
TaaI	ACNGT	6 cut(s)	106, 114, 215, 247, 444, 605
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	1 cut(s)	294
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	2 cut(s)	65, 320
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	4 cut(s)	111, 117, 487, 586
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	4 cut(s)	5, 8, 142, 311
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	271
TspRI	CASTG	4 cut(s)	111, 117, 487, 586
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	473
XhoI	CTCGAG	1 cut(s)	293
XspI	CTAG	4 cut(s)	53, 270, 597, 663
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.