Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004515

Physical Location & Seq

Genomic Coordinates Forward (+)

5316197 .. 5322700

Gene Structure 6504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3096 bp

ATGTTTTATTCGCAGTTTATATTAGCTAAGAAAGGGCCACTTGGGACAATATGGATTGCTGCCCATTTGGAGAGGAAGCTTCGAAAGAATCAGGTCGCTGATACTGATATTGGAGTCTCCGTTGATTCTATTCTCTTTCCGGAAGCTCCGATTGCATTGCGATTGTCTAGTCATCTTCTGCTTGGTGTTGTGCGTATATATTCGAGAAAGGTGAATTACCTCTTTGATGATTGCAGTGAGGCATTGCTTAAGGTAAAGCAAGCTTTTCGCTCTGCTGCTGTTGACCTACCCCCTGAAGAATCTACAGCGCCGTATCACTCTATTACGTTGCCAGAGACATTTGATCTTGATGACTTTGAGCTTCCAGACAATGAGATCTTTCAGGGTAATTACGTTGATCATCATGTTAGTACAAAAGAGCAGATCACCCTTCAGGATACCATGGATGGCGTTGTATACTCAACGTCACAATTTGGATTAGATGAGCGATTTGGTGATGGCGACACTTCTCAAGCTGCTTTGGATCTTGATGAGGCAGTATTCCAGGACAAGGATGTTATTGGATCCGACGATGAGGGAGTTCCAGGTATTGATCACAACGCGTATCTGGATGCGGCAGCACCCGGGATAAAGGATTCGATGGAAGGAGTCTCTGAAGCCATGCCCATGGATTTTAATGAAGAGCAGGTTGAAGATCTTGCTATGAATAATGAGTTCATCGAAGATGCTCAAGCTCCTCAAACTCCTGGATTAGTTGAGGTGCCAAACTCGTCTAGTGTGAGAGAGCAGATGGCATGCGATGATCACATGGACGTAGAGGATCTGAATGCAGAAGAAGGTATAAAGTCCTCTGGGGAGCTGAATGCTAATGAGATGCCTAAACGTGGGGAAGACCTGTCTTCTGAATATAATGCCCCAGAATCAGCAGTTACTCCTGTGGAGGTAGATAAGTCACAGATAGATGAAAATGTCAACACACAAAATGAGCCGGAGGAGGAGAGGGCAGAGCATGTACATGTTACATCTCCATGTTGTTCTCACATCACCACCGAGATGGAGGATCCTGGTCAAGTAATGAATGAGGCAGGAGCTAATGTTGTACCTGATAAACCCGATGCTGTTCCTCCACTTGAAACCCCTGGAGAAGAGAACCGAGATCATTTTGCCATTGCCACTGAGGTCAATCAGGAAACAGATTCTAGTTTACAAGGAGATGAGCAAGCGTACAGTAGACCAGATGGGCAGCTGAATAATGCACACGAAACTGATGAACAGTTGGGAAATTTGACTGGATTTACCGATTCTGATTTCCCTCCACCTGAGAAGGTATTAGCTGTACCTAACAGACAGGGGGATGGAAATGATTTCATGGTTGAATCTACACCAGATAAAGAAGACCCTGGCACATGTAATGATGATGCGGGGAATAATAACATTACTGGGAAAAAACGCACTTTTACTGAGAGCACACTAACTGCAGAAAGTTTGAACTCTGTGGAGTCAGTTGGACTGATTCAGTCAAAGAGAACTGCAGATTCTGTCCCTGATGACGATGATTTGTTGTCTTCTATCTTAGTTGGAAAGTCATCCTTTCTGAAGATGAGGCCTACCCCTGTGCTTGAACCAGCAACTACAAAACGGTTACGATCTGCTCCCCGCTCTACTGCCACAAAGAGGAAGGTTCTAATGGATGACCCTATGGTCTTGCATGGCGACATTATACGTCAACAACTGACAAACACTGAAGATATACGGCGCGTGCGAAAGAAGGCACCTTGCACCGTTCCTGAAATCGTAATGCTTCAAAGGCAGGCTTTGGAGGATGGACTCTTTAAGGAGCCAATATTTACTGGTATGTCAGTGGAATTAGTATCTCTGCACACTGAGCCGTATGATCTAAGAGGAATCATGATAATTGAGAATGATGACCGTCATGCTTCTGTTGGAGCGGTGGAAGATAATGAATGTTCTGTTACGGCCGTGGAAGAAAATAAAACGGAAGAAAGCTCTGATCCGCAAGCTCACCCAAATGATTGTGAGGAGCAACCTGGTACGGCTCATACTCACCCGCAGGAGGAACAAACCATAAACCAACAGGAAGAGCTGAAAGATGATAATGAGCTTGCTGAAAAATCTGACTTGGAGGTTTTGAAGGAAGGCAATGGAGCTGCTGATGAAGTAAATCTTGTAGTGATTGACGATGTCAGTCAAATACCGTCTGAGGAAAAACTCGACCGTGTAGAGGATTTACAGGTTGAAGAATCCCATGAAAACCATGATGGAGAAGGCGGGCAGGATGTTTGTGCGGATCCTAATGAAAAAAGTTGCACTGACGTTATTGAAATTGCTGAAGGCGATACAGATATCAACCCCATTTTCAATGAGATGGACTTGAAAGTTGAAGATGAACTTCCACATGAAGATGAGAAAACGGATGCATCAGCTGAAGTTAGCGAGCTTGGGAGAGACGATCAGACTCCATGCGATAACACAGTTGGGTCTACTGAAACTGGATGCCTAGAAGCTGGTGATTTGAGTAACATGGCTTTGGAAAATTGCAATGAACCTCTGGTGGAAGCGAATAGTGATGGGTTGAATCCAGAGACAGAGTCTTATAACAAATACGAACCGCATAATGAGATGTCTAATGAGGAGGCGTCTATGCAAAATGCATTAGATGGAGAGCATACTTCTCGTGATGGTCTTATGGGAGACAATGATGAAATGGATACCATGGAAAATGCACATGACACAGGATTTTTGAACGTCGATGATGATGAAGTAGATGAAGATCATGAGGAGGATGACATACAATATGATGATGAAACTCGTCTTCTAGAAAACAGTGGATGGTCTTCTCGTACTAGGGCTGTGGCAAAGTATCTCCAGACGTTATTTGATAAAGAAACCGAGAATGGGAAGAATGTTCTTGTGGCAGACAAACTTTTAGCTGGGAAAACCCGTAAAGAAGCATCGAGAATGTTTTTCGAAACCCTGGTTCTTAAAACAAGAGATTACATCCAAGTCGAACAAGGGAAGCCCTATGAAAGCATCATCATAAAACCGCGACCAAAGCTCACCAAATCCATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007275 GO:0008150 GO:0008152 GO:0008278 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070601 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

1031

Amino Acids

114.06

Weight (kDa)

4.22

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	1 - 101	1.8e-38	N terminus of Rad21 / Rec8 like protein
Rad21_Rec8	PF04824	973 - 1026	1.3e-22	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16270
fragaria_vesca	FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010
malus_domestica	MD00G1016700.v1.1
prunus_persica	Prupe.6G366000_v2.0.a1 Prupe.6G366000_v2.0.a1
pyrus_communis	pycom04g22040 pycom10g04620 pycom12g24300
rosa_chinensis	RchiOBHm_Chr3g0447331
rosa_laevigata	RLG00000026010
rosa_multiflora	Rmu_ssc0000473.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425510
rosa_rugosa	Rorug02G0599600.1 Rorug02G0599700.1 Rorug02G0599800.1 Rorug02G0599900
rosa_samantha	Rh3AG000300 Rh3BG000100 Rh3CG000100 Rh3DG000300 Rh5AG542800 Rh5AG542900
rosa_wichuraiana	Rw3G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2616
AasI	GACNNNNNNGTC	1 cut(s)	1700
Acc36I	ACCTGC	1 cut(s)	676
AccB1I	GGYRCC	2 cut(s)	760, 1771
AccBSI	CCGCTC	2 cut(s)	1659, 1949
AccI	GTMKAC	3 cut(s)	456, 1231, 2501
AccII	CGCG	3 cut(s)	602, 1758, 3067
AccIII	TCCGGA	1 cut(s)	139
AclWI	GGATC	9 cut(s)	531, 558, 571, 828, 1055, 1068, 2006, 2303, 2316
AcoI	YGGCCR	1 cut(s)	1977
AcsI	RAATTY	1 cut(s)	1282
AcuI	CTGAAG	7 cut(s)	315, 416, 675, 1616, 1764, 2370, 2466
AcyI	GRCGYC	1 cut(s)	2657
AfaI	GTAC	7 cut(s)	412, 1014, 1101, 1226, 1338, 2053, 2863
AfiI	CCNNNNNNNGG	6 cut(s)	550, 884, 1674, 2074, 2242, 2916
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	3 cut(s)	600, 1015, 1406
AjnI	CCWGG	8 cut(s)	543, 583, 745, 1063, 1138, 1399, 2047, 2994
AjuI	GAANNNNNNNTTGG	1 cut(s)	3074
Alw21I	GWGCWC	1 cut(s)	1469
Alw26I	GTCTC	6 cut(s)	121, 329, 655, 2460, 2597, 2706
AlwI	GGATC	9 cut(s)	531, 558, 571, 828, 1055, 1068, 2006, 2303, 2316
AlwNI	CAGNNNCTG	1 cut(s)	1538
Ama87I	CYCGRG	1 cut(s)	623
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	3 cut(s)	35, 1604, 1977
ApeKI	GCWGC	6 cut(s)	59, 275, 515, 617, 1243, 2168
ApoI	RAATTY	1 cut(s)	1282
AspLEI	GCGC	2 cut(s)	310, 1758
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	2 cut(s)	624, 625
AsuHPI	GGTGA	8 cut(s)	223, 418, 506, 1036, 2015, 2057, 2540, 3070
AsuII	TTCGAA	2 cut(s)	82, 2988
AvaI	CYCGRG	1 cut(s)	623
BamHI	GGATCC	3 cut(s)	563, 1060, 2308
BanI	GGYRCC	2 cut(s)	760, 1771
BauI	CACGAG	1 cut(s)	2694
BbsI	GAAGAC	6 cut(s)	891, 897, 1401, 1557, 2825, 2847
Bbv12I	GWGCWC	1 cut(s)	1469
BbvI	GCAGC	6 cut(s)	46, 262, 502, 629, 1255, 2155
BceAI	ACGGC	6 cut(s)	295, 1769, 1873, 1964, 1992, 2070
BcgI	CGANNNNNNTGC	6 cut(s)	139, 173, 248, 282, 2675, 2709
BciT130I	CCWGG	8 cut(s)	545, 585, 747, 1065, 1140, 1401, 2049, 2996
BciVI	GTATCC	2 cut(s)	430, 2722
BclI	TGATCA	3 cut(s)	397, 592, 802
BcnI	CCSGG	2 cut(s)	624, 625
BcoDI	GTCTC	6 cut(s)	121, 329, 655, 2460, 2597, 2706
BfaI	CTAG	7 cut(s)	168, 774, 1200, 2519, 2837, 2865, 3094
BfmI	CTRYAG	3 cut(s)	303, 1476, 1530
BfoI	RGCGCY	1 cut(s)	311
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	676
BfuI	GTATCC	2 cut(s)	430, 2722
BglII	AGATCT	2 cut(s)	375, 694
BisI	GCNGC	7 cut(s)	60, 276, 516, 615, 618, 1244, 2169
BlsI	GCNGC	7 cut(s)	61, 277, 517, 616, 619, 1245, 2170
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	6 cut(s)	565, 762, 1062, 1773, 1839, 2310
BmrI	ACTGGG	1 cut(s)	1449
BmuI	ACTGGG	1 cut(s)	1449
BpiI	GAAGAC	6 cut(s)	891, 897, 1401, 1557, 2825, 2847
BpmI	CTGGAG	2 cut(s)	1161, 2870
Bpu14I	TTCGAA	2 cut(s)	82, 2988
BpuEI	CTTGAG	2 cut(s)	495, 714
BpuMI	CCSGG	2 cut(s)	624, 625
BsaBI	GATNNNNATC	1 cut(s)	2790
BsaHI	GRCGYC	1 cut(s)	2657
BsaJI	CCNNGG	8 cut(s)	441, 623, 666, 1138, 1399, 1980, 2733, 2994
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 1080, 1110
Bsc4I	CCNNNNNNNGG	6 cut(s)	550, 884, 1674, 2074, 2242, 2916
Bse1I	ACTGG	4 cut(s)	1294, 1444, 1855, 2515
Bse3DI	GCAATG	5 cut(s)	155, 242, 1167, 2167, 2566
Bse8I	GATNNNNATC	1 cut(s)	2790
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	8 cut(s)	545, 585, 747, 1065, 1140, 1401, 2049, 2996
BseDI	CCNNGG	8 cut(s)	441, 623, 666, 1138, 1399, 1980, 2733, 2994
BseJI	GATNNNNATC	1 cut(s)	2790
BseLI	CCNNNNNNNGG	6 cut(s)	550, 884, 1674, 2074, 2242, 2916
BseMI	GCAATG	5 cut(s)	155, 242, 1167, 2167, 2566
BseMII	CTCAG	5 cut(s)	1167, 1311, 1452, 1875, 2211
BseNI	ACTGG	4 cut(s)	1294, 1444, 1855, 2515
BseRI	GAGGAG	6 cut(s)	726, 1007, 1010, 2054, 2666, 2813
BseX3I	CGGCCG	1 cut(s)	1977
BseXI	GCAGC	6 cut(s)	46, 262, 502, 629, 1255, 2155
BseYI	CCCAGC	1 cut(s)	2951
BsgI	GTGCAG	1 cut(s)	1862
Bsh1236I	CGCG	3 cut(s)	602, 1758, 3067
Bsh1285I	CGRYCG	2 cut(s)	1980, 2236
BshFI	GGCC	3 cut(s)	37, 1606, 1979
BshNI	GGYRCC	2 cut(s)	760, 1771
BsiEI	CGRYCG	2 cut(s)	1980, 2236
BsiHKAI	GWGCWC	1 cut(s)	1469
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	3 cut(s)	140, 624, 989
BslFI	GGGAC	2 cut(s)	58, 1526
BslI	CCNNNNNNNGG	6 cut(s)	550, 884, 1674, 2074, 2242, 2916
BsmAI	GTCTC	6 cut(s)	121, 329, 655, 2460, 2597, 2706
BsmBI	CGTCTC	1 cut(s)	2460
BsmFI	GGGAC	2 cut(s)	58, 1526
BsmI	GAATGC	2 cut(s)	832, 868
BsnI	GGCC	3 cut(s)	37, 1606, 1979
BsoBI	CYCGRG	1 cut(s)	623
Bsp119I	TTCGAA	2 cut(s)	82, 2988
Bsp1286I	GDGCHC	1 cut(s)	1469
Bsp13I	TCCGGA	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	1012
Bsp19I	CCATGG	3 cut(s)	441, 666, 2733
BspANI	GGCC	3 cut(s)	37, 1606, 1979
BspCNI	CTCAG	5 cut(s)	1168, 1312, 1453, 1876, 2212
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	3 cut(s)	602, 1758, 3067
BspHI	TCATGA	2 cut(s)	1908, 2794
BspLI	GGNNCC	6 cut(s)	565, 762, 1062, 1773, 1839, 2310
BspMAI	CTGCAG	2 cut(s)	1480, 1534
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	9 cut(s)	531, 558, 571, 828, 1055, 1068, 2006, 2303, 2316
BspQI	GCTCTTC	2 cut(s)	675, 2094
BspT104I	TTCGAA	2 cut(s)	82, 2988
BspT107I	GGYRCC	2 cut(s)	760, 1771
BspTI	CTTAAG	1 cut(s)	248
BsrBI	CCGCTC	2 cut(s)	1659, 1949
BsrDI	GCAATG	5 cut(s)	155, 242, 1167, 2167, 2566
BsrGI	TGTACA	1 cut(s)	1012
BsrI	ACTGG	4 cut(s)	1294, 1444, 1855, 2515
BssECI	CCNNGG	8 cut(s)	441, 623, 666, 1138, 1399, 1980, 2733, 2994
BssNAI	GTATAC	1 cut(s)	457
BssNI	GRCGYC	1 cut(s)	2657
BssSI	CACGAG	1 cut(s)	2694
BssT1I	CCWWGG	3 cut(s)	441, 666, 2733
Bst1107I	GTATAC	1 cut(s)	457
Bst2BI	CACGAG	1 cut(s)	2694
Bst2UI	CCWGG	8 cut(s)	545, 585, 747, 1065, 1140, 1401, 2049, 2996
Bst4CI	ACNGT	9 cut(s)	1229, 1275, 1641, 1783, 1931, 2217, 2237, 2494, 2846
Bst6I	CTCTTC	3 cut(s)	675, 1140, 2094
BstACI	GRCGYC	1 cut(s)	2657
BstAFI	CTTAAG	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	1012
BstBI	TTCGAA	2 cut(s)	82, 2988
BstC8I	GCNNGC	9 cut(s)	261, 796, 1221, 1760, 1812, 2019, 2124, 2291, 2456
BstDEI	CTNAG	8 cut(s)	27, 1176, 1320, 1461, 1573, 1884, 1898, 2220
BstDSI	CCRYGG	4 cut(s)	441, 666, 1980, 2733
BstFNI	CGCG	3 cut(s)	602, 1758, 3067
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	310, 1758
BstMAI	GTCTC	6 cut(s)	121, 329, 655, 2460, 2597, 2706
BstMCI	CGRYCG	2 cut(s)	1980, 2236
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 1807, 1885, 3073
BstNI	CCWGG	8 cut(s)	545, 585, 747, 1065, 1140, 1401, 2049, 2996
BstNSI	RCATGY	4 cut(s)	798, 1013, 1019, 1410
BstSFI	CTRYAG	3 cut(s)	303, 1476, 1530
BstUI	CGCG	3 cut(s)	602, 1758, 3067
BstV1I	GCAGC	6 cut(s)	46, 262, 502, 629, 1255, 2155
BstV2I	GAAGAC	6 cut(s)	891, 897, 1401, 1557, 2825, 2847
BstX2I	RGATCY	7 cut(s)	375, 523, 563, 694, 820, 1060, 2308
BstXI	CCANNNNNNTGG	2 cut(s)	667, 1054
BstYI	RGATCY	7 cut(s)	375, 523, 563, 694, 820, 1060, 2308
BstZ17I	GTATAC	1 cut(s)	457
BstZI	CGGCCG	1 cut(s)	1977
BsuI	GTATCC	2 cut(s)	430, 2722
BsuRI	GGCC	3 cut(s)	37, 1606, 1979
BtgI	CCRYGG	4 cut(s)	441, 666, 1980, 2733
BtgZI	GCGATG	1 cut(s)	813
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	7 cut(s)	241, 1173, 1740, 1866, 1881, 2328, 2851
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	9 cut(s)	261, 796, 1221, 1760, 1812, 2019, 2124, 2291, 2456
CaiI	CAGNNNCTG	1 cut(s)	1538
CciI	TCATGA	2 cut(s)	1908, 2794
CfoI	GCGC	2 cut(s)	310, 1758
Cfr13I	GGNCC	1 cut(s)	35
Cfr9I	CCCGGG	1 cut(s)	623
CseI	GACGC	1 cut(s)	2646
CsiI	ACCWGGT	1 cut(s)	2047
Csp6I	GTAC	7 cut(s)	411, 1013, 1100, 1225, 1337, 2052, 2862
CviQI	GTAC	7 cut(s)	411, 1013, 1100, 1225, 1337, 2052, 2862
DdeI	CTNAG	8 cut(s)	27, 1176, 1320, 1461, 1573, 1884, 1898, 2220
DrdI	GACNNNNNNGTC	1 cut(s)	1700
DseDI	GACNNNNNNGTC	1 cut(s)	1700
EaeI	YGGCCR	1 cut(s)	1977
EagI	CGGCCG	1 cut(s)	1977
Eam1104I	CTCTTC	3 cut(s)	675, 1140, 2094
EarI	CTCTTC	3 cut(s)	675, 1140, 2094
EclXI	CGGCCG	1 cut(s)	1977
Eco130I	CCWWGG	3 cut(s)	441, 666, 2733
Eco147I	AGGCCT	1 cut(s)	1606
Eco32I	GATATC	1 cut(s)	2365
Eco52I	CGGCCG	1 cut(s)	1977
Eco57I	CTGAAG	7 cut(s)	315, 416, 675, 1616, 1764, 2370, 2466
Eco88I	CYCGRG	1 cut(s)	623
EcoRII	CCWGG	8 cut(s)	543, 583, 745, 1063, 1138, 1399, 2047, 2994
EcoRV	GATATC	1 cut(s)	2365
EcoT14I	CCWWGG	3 cut(s)	441, 666, 2733
EcoT22I	ATGCAT	2 cut(s)	2440, 2674
ErhI	CCWWGG	3 cut(s)	441, 666, 2733
Esp3I	CGTCTC	1 cut(s)	2460
FaqI	GGGAC	2 cut(s)	58, 1526
FauI	CCCGC	4 cut(s)	1414, 1664, 2076, 2282
FbaI	TGATCA	3 cut(s)	397, 592, 802
FblI	GTMKAC	3 cut(s)	456, 1231, 2501
Fnu4HI	GCNGC	7 cut(s)	60, 276, 516, 615, 618, 1244, 2169
Fsp4HI	GCNGC	7 cut(s)	60, 276, 516, 615, 618, 1244, 2169
FspBI	CTAG	7 cut(s)	168, 774, 1200, 2519, 2837, 2865, 3094
GlaI	GCGC	2 cut(s)	309, 1757
GluI	GCNGC	7 cut(s)	60, 276, 516, 615, 618, 1244, 2169
GsaI	CCCAGC	1 cut(s)	2955
GsuI	CTGGAG	2 cut(s)	1161, 2870
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	37, 1606, 1979
HapII	CCGG	3 cut(s)	140, 624, 989
HgaI	GACGC	1 cut(s)	2646
HhaI	GCGC	2 cut(s)	310, 1758
Hin1I	GRCGYC	1 cut(s)	2657
Hin6I	GCGC	2 cut(s)	308, 1756
HinP1I	GCGC	2 cut(s)	308, 1756
HincII	GTYRAC	3 cut(s)	283, 973, 1727
HindII	GTYRAC	3 cut(s)	283, 973, 1727
HindIII	AAGCTT	2 cut(s)	77, 261
HpaII	CCGG	3 cut(s)	140, 624, 989
HphI	GGTGA	8 cut(s)	223, 418, 506, 1036, 2015, 2057, 2540, 3070
Hpy166II	GTNNAC	7 cut(s)	283, 457, 973, 1205, 1232, 1727, 2502
Hpy8I	GTNNAC	7 cut(s)	283, 457, 973, 1205, 1232, 1727, 2502
Hpy99I	CGWCG	2 cut(s)	572, 2771
HpyCH4III	ACNGT	9 cut(s)	1229, 1275, 1641, 1783, 1931, 2217, 2237, 2494, 2846
HpyCH4IV	ACGT	9 cut(s)	326, 393, 464, 813, 883, 1723, 2334, 2766, 2891
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 1807, 1885, 3073
HpyF3I	CTNAG	8 cut(s)	27, 1176, 1320, 1461, 1573, 1884, 1898, 2220
HpySE526I	ACGT	9 cut(s)	326, 393, 464, 813, 883, 1723, 2334, 2766, 2891
Hsp92I	GRCGYC	1 cut(s)	2657
HspAI	GCGC	2 cut(s)	308, 1756
Kpn2I	TCCGGA	1 cut(s)	139
Ksp22I	TGATCA	3 cut(s)	397, 592, 802
LguI	GCTCTTC	2 cut(s)	675, 2094
LmnI	GCTCC	9 cut(s)	151, 739, 856, 1088, 1657, 1837, 1946, 2041, 2165
Lsp1109I	GCAGC	6 cut(s)	46, 262, 502, 629, 1255, 2155
MabI	ACCWGGT	1 cut(s)	2047
MaeI	CTAG	7 cut(s)	168, 774, 1200, 2519, 2837, 2865, 3094
MaeII	ACGT	9 cut(s)	326, 393, 464, 813, 883, 1723, 2334, 2766, 2891
MaeIII	GTNAC	7 cut(s)	465, 928, 951, 1018, 1641, 1972, 2537
MbiI	CCGCTC	2 cut(s)	1659, 1949
MflI	RGATCY	7 cut(s)	375, 523, 563, 694, 820, 1060, 2308
MhlI	GDGCHC	1 cut(s)	1469
MluCI	AATT	8 cut(s)	214, 388, 470, 1282, 1865, 1914, 2343, 2554
MluI	ACGCGT	1 cut(s)	600
MlyI	GAGTC	6 cut(s)	123, 657, 1508, 1821, 2470, 2618
MmeI	TCCRAC	4 cut(s)	591, 1486, 1558, 1924
Mph1103I	ATGCAT	2 cut(s)	2440, 2674
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	4 cut(s)	249, 675, 1833, 3003
MslI	CAYNNNNRTG	6 cut(s)	665, 1014, 1027, 1052, 2028, 2421
MspA1I	CMGCKG	2 cut(s)	1246, 2444
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	3 cut(s)	140, 624, 989
Mva1269I	GAATGC	2 cut(s)	832, 868
MvaI	CCWGG	8 cut(s)	545, 585, 747, 1065, 1140, 1401, 2049, 2996
MvnI	CGCG	3 cut(s)	602, 1758, 3067
MwoI	GCNNNNNNNGC	4 cut(s)	152, 1807, 1885, 3073
NciI	CCSGG	2 cut(s)	624, 625
NcoI	CCATGG	3 cut(s)	441, 666, 2733
NlaIV	GGNNCC	6 cut(s)	565, 762, 1062, 1773, 1839, 2310
NmuCI	GTSAC	2 cut(s)	465, 951
NsiI	ATGCAT	2 cut(s)	2440, 2674
NspI	RCATGY	4 cut(s)	798, 1013, 1019, 1410
NspV	TTCGAA	2 cut(s)	82, 2988
PaeI	GCATGC	1 cut(s)	798
PagI	TCATGA	2 cut(s)	1908, 2794
PceI	AGGCCT	1 cut(s)	1606
PciI	ACATGT	2 cut(s)	1015, 1406
PciSI	GCTCTTC	2 cut(s)	675, 2094
PcsI	WCGNNNNNNNCGW	1 cut(s)	1759
PctI	GAATGC	2 cut(s)	832, 868
PflFI	GACNNNGTC	2 cut(s)	2201, 2608
PfoI	TCCNGGA	2 cut(s)	543, 745
PkrI	GCNGC	7 cut(s)	61, 277, 517, 616, 619, 1245, 2170
PleI	GAGTC	6 cut(s)	122, 656, 1507, 1821, 2470, 2617
PpsI	GAGTC	6 cut(s)	122, 656, 1507, 1821, 2470, 2617
PscI	ACATGT	2 cut(s)	1015, 1406
PsiI	TTATAA	1 cut(s)	2616
Psp6I	CCWGG	8 cut(s)	543, 583, 745, 1063, 1138, 1399, 2047, 2994
PspFI	CCCAGC	1 cut(s)	2951
PspGI	CCWGG	8 cut(s)	543, 583, 745, 1063, 1138, 1399, 2047, 2994
PspN4I	GGNNCC	6 cut(s)	565, 762, 1062, 1773, 1839, 2310
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	2 cut(s)	1480, 1534
PstNI	CAGNNNCTG	1 cut(s)	1538
PsuI	RGATCY	7 cut(s)	375, 523, 563, 694, 820, 1060, 2308
PsyI	GACNNNGTC	2 cut(s)	2201, 2608
PvuII	CAGCTG	2 cut(s)	1246, 2444
RsaI	GTAC	7 cut(s)	412, 1014, 1101, 1226, 1338, 2053, 2863
RsaNI	GTAC	7 cut(s)	411, 1013, 1100, 1225, 1337, 2052, 2862
RseI	CAYNNNNRTG	6 cut(s)	665, 1014, 1027, 1052, 2028, 2421
SapI	GCTCTTC	2 cut(s)	675, 2094
SaqAI	TTAA	4 cut(s)	249, 675, 1833, 3003
SatI	GCNGC	7 cut(s)	60, 276, 516, 615, 618, 1244, 2169
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	6 cut(s)	123, 657, 1508, 1821, 2470, 2618
SduI	GDGCHC	1 cut(s)	1469
SexAI	ACCWGGT	1 cut(s)	2047
SfcI	CTRYAG	3 cut(s)	303, 1476, 1530
SfuI	TTCGAA	2 cut(s)	82, 2988
SmaI	CCCGGG	1 cut(s)	625
SmiMI	CAYNNNNRTG	6 cut(s)	665, 1014, 1027, 1052, 2028, 2421
SmlI	CTYRAG	3 cut(s)	248, 510, 729
SmoI	CTYRAG	3 cut(s)	248, 510, 729
SphI	GCATGC	1 cut(s)	798
Sse9I	AATT	8 cut(s)	214, 388, 470, 1282, 1865, 1914, 2343, 2554
SseBI	AGGCCT	1 cut(s)	1606
SspI	AATATT	1 cut(s)	1845
SspMI	CTAG	7 cut(s)	168, 774, 1200, 2519, 2837, 2865, 3094
StuI	AGGCCT	1 cut(s)	1606
StyI	CCWWGG	3 cut(s)	441, 666, 2733
TaaI	ACNGT	9 cut(s)	1229, 1275, 1641, 1783, 1931, 2217, 2237, 2494, 2846
TaiI	ACGT	9 cut(s)	329, 396, 467, 816, 886, 1726, 2337, 2769, 2894
TaqI	TCGA	9 cut(s)	82, 203, 638, 720, 2232, 2769, 2975, 2988, 3027
TasI	AATT	8 cut(s)	214, 388, 470, 1282, 1865, 1914, 2343, 2554
TatI	WGTACW	2 cut(s)	410, 1012
TauI	GCSGC	1 cut(s)	617
Tru1I	TTAA	4 cut(s)	249, 675, 1833, 3003
Tru9I	TTAA	4 cut(s)	249, 675, 1833, 3003
TscAI	CASTG	7 cut(s)	241, 1180, 1747, 1866, 1888, 2335, 2851
TseFI	GTSAC	2 cut(s)	465, 951
TseI	GCWGC	6 cut(s)	59, 275, 515, 617, 1243, 2168
Tsp45I	GTSAC	2 cut(s)	465, 951
TspGWI	ACGGA	3 cut(s)	109, 2012, 2447
TspMI	CCCGGG	1 cut(s)	623
TspRI	CASTG	7 cut(s)	241, 1180, 1747, 1866, 1888, 2335, 2851
Tth111I	GACNNNGTC	2 cut(s)	2201, 2608
Vha464I	CTTAAG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	1282
XbaI	TCTAGA	1 cut(s)	2836
XceI	RCATGY	4 cut(s)	798, 1013, 1019, 1410
XmaI	CCCGGG	1 cut(s)	623
XmiI	GTMKAC	3 cut(s)	456, 1231, 2501
XspI	CTAG	7 cut(s)	168, 774, 1200, 2519, 2837, 2865, 3094
Zsp2I	ATGCAT	2 cut(s)	2440, 2674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.