Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000473.1

Orthogroup ID

OG0004515

Physical Location & Seq

Genomic Coordinates Reverse (-)

289 .. 11185

Gene Structure 10897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000473.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3600 bp

atgttttactcgcagtttatattggcaaagaaaggcccacttgggacgatatggatagcggcacatttggagcgcaagcttcgcaagaatcaggttgccgacaccgatattggcgtctctgtagattctattctctttccagaagttccgattgctcttaggttgtccagtcatcttctgcttggtgtagtgaggatatattctagaaaggtgaattacctttttgatgactgcagtgaggctttgcttaagataaagcaagcttttcgctccaccgcagtcgatttacctccagaagaatctactgcaccgtatcattctatcactttgcctgagacttttgatcttgatgattttgagctaccagataacgacatttttcagggtaactatgttgatcatcatgtcagtacaagggaacagattactctccaagatgcaatggagggtgtggtttactcaacatctcagtttggattggacgagcgatttggtgatggtgatacttctcaaattggtctagattttgatgaggacttgttcttaggcaaggctgcagctcaagggaatgatggaatttctggtggcgatcccgaggcattggcccagccaacaacacccctggaaaagcatgaagtttttgagggagtacctggaacttcagaaactgttcaaatgaatgggactggaaaccagaatgaagtcctagctgcaaatactgaatttgtcacatatgctcaggctccatcaactcctggattatttgaagaaccaaacttgtccagcgttcaggaagctatggcctgcaatgatcacttggatttggaagaccatagtttatcaaatttacgagtaccggaaagcacagaaaatgcttgtagggagttaggtccacgttgtgaggatgataatacaatgaatttgcctgagaatggatacaatttgggagatttggagatgaaacaaatgattccaccagtgcatgagcagattaaacctgtttctccagtattagaatgttcaaatgggacggttggtgcgctggatttcccaaacagggtggaagatataaataatggtattgtaataaacagtgaaccaactatgctcttcatagaaaaaagggatgaacaatgtgtagaacctgcaggagttaggttggatgaaaccgttgcatctcccagttgctctcaggttacctccgagttggaggagtctgctcgtaaggtttcttcaactggtacctgtgtgcgagtgccggaggattatttggaggatcaacagacatctctgaagtctgaaattcaaaatgatattgctattgctaatgatatgggagaagcatgcacacctaacattgtagattcttccaaccctgtagctcatgaaaagatggcatctgcccaacactctgtgctccaggcatgcaactcccatccgagtcatcacggtgtgctatctccttcagataaaagtgcagaaattccttgcaacttatcatctgaggttgtgcggttgaagtcagtggacaatgctatatcttgcgacaatcaaccagatgttttggataggtctgctactcccgacttgcttgcacctgaaaagtttctatctataccggacgggctcactgctgaaccaagtgatttaccaatggagtctacacctgacaaagaagtctttggtggggatggtgttgatggtgctgggaccaaactcatctcagggaagaaacgcagttctacagaaagtactgtaacagttcaaagtttaaattcagttgagtcatttggggaggcccgaggaaagcgaactgcagattccatccccgatgatgatgatttattgtcttctattttagttgggagaaaatcttcagttttaaaactgaaaccgactccgcctgtacctgaaatgaaaaccgcaaaacgctcccgaactgctcttcgtggcactgcctcaaagagaaaagtgctaatggatgatacaatggttctgcatggcgatacaatacgccagcagttgacaaataccgaagatatacgtcgtgtgcggaaaaaagccccttgtactcgcccagaaatttcaatgattcagagacaaaatttggaagatgaaattttcattgaacccattgtcacaggcatgtcgggggaactgacatttctgcacactgagaattttgatctgagtagaaccaggttttctgaagatgatcaagacaatgcttctgacgaggtactgaaggatgtacggtattccgtgaggtcaaatgttactgaagaatctgaaatccttggaagcactgagcctgtaatagtaagagatgatgcagaagcacaagcggacattgttattgagactaaaaactgggggatgcaagatcataacctaagatctcaggatactgatgctcaagggcaggggattaccaacccagaagaatcgaagcatgaacccttggcggaggtgagtgaaatggaaattgatgtaaacaatgcagaagttacctatcctgtttcaggagatatatacgatatgccatctgaagataacatccagccaaggctcctgaataaaattgatgaggaagatgcttctctgcagatgggtgcattatgcatgtccccagatgaaaagttggacagtcgacctattgaggtggatgcgtcgatagtggatgcaagtattcagaaaggagttgacgctattggatttgttgagcataatgtcgaaatcagagcagatgttcagatgggtttttctgaacttactgacataaattctacacttgcaactgtatgtcttgaaactggcgacaacaaaaacctgagttcttcaaatgatcattctatggaagaaatgggacatcagctgcatattttgaatgaaaatgaggtcctggatgcaagctttggttgtgatgacaaggacaccaagtctagttgtatgcttggtggagaagacaacattggttctacaatttcgttggaacttgatgtggatgcaaagtatatttccttcagtgataaggaaaacctagaacatgaggaggctgatccacggagtggaactgaggcagaagtcactgcagaccaccctgctgcaaattgtggagattgtggcgatctagtttttggaaatgatacagaatttttgaatgtagatgatgaagagatagccgaggaaggggatgacatgccgactgctgaagacactagtcttcttgaaaacagtggatggtcttcccgcaccagggctgttgccaagtatcttcaaactttatttgataaggaagctgtgcatgggaaaaaagttctcggcatggacaacttattaaatggaaaaactcgcaaggaagcttcaaggatggctgttgccaagtatcttcaaactttatttgataaggaagctgtgcatgggaaaaaagttctcggcatggacaacttattaaatggaaaaactcgcaaggaagcttcaaggatgttttttgaaacattggttcttaagacaagggattacatcaatgtagaccaggcaaaaccctttgacaacattaacataaagcctagagtaaagctcatgaaatcagacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007275 GO:0008150 GO:0008152 GO:0008278 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070601 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

1199

Amino Acids

131.65

Weight (kDa)

4.47

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16270
fragaria_vesca	FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010
malus_domestica	MD00G1016700.v1.1
prunus_persica	Prupe.6G366000_v2.0.a1 Prupe.6G366000_v2.0.a1
pyrus_communis	pycom04g22040 pycom10g04620 pycom12g24300
rosa_chinensis	RchiOBHm_Chr3g0447331
rosa_laevigata	RLG00000026010
rosa_multiflora	Rmu_ssc0000473.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425510
rosa_rugosa	Rorug02G0599600.1 Rorug02G0599700.1 Rorug02G0599800.1 Rorug02G0599900
rosa_samantha	Rh3AG000300 Rh3BG000100 Rh3CG000100 Rh3DG000300 Rh5AG542800 Rh5AG542900
rosa_wichuraiana	Rw3G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1676
Acc36I	ACCTGC	1 cut(s)	1153
Acc65I	GGTACC	1 cut(s)	1241
AccB1I	GGYRCC	1 cut(s)	1241
AccB7I	CCANNNNNTGG	1 cut(s)	3068
AccI	GTMKAC	3 cut(s)	1661, 2650, 3531
AciI	CCGC	9 cut(s)	59, 276, 1513, 1901, 1923, 2053, 2345, 2465, 3250
AclWI	GGATC	3 cut(s)	584, 1284, 3053
AcyI	GRCGYC	1 cut(s)	114
AdeI	CACNNNGTG	4 cut(s)	899, 1414, 1453, 3068
AfaI	GTAC	9 cut(s)	412, 651, 855, 1243, 1753, 1908, 2071, 2241, 2253
AfiI	CCNNNNNNNGG	7 cut(s)	932, 1057, 2522, 3068, 3189, 3255, 3256
AflII	CTTAAG	2 cut(s)	248, 3506
AhdI	GACNNNNNGTC	1 cut(s)	2938
AhlI	ACTAGT	1 cut(s)	3218
AjnI	CCWGG	8 cut(s)	621, 652, 754, 1419, 2198, 2901, 3254, 3534
AjuI	GAANNNNNNNTTGG	2 cut(s)	2955, 2987
Alw21I	GWGCWC	1 cut(s)	1419
Alw26I	GTCTC	4 cut(s)	121, 329, 2092, 2354
AlwI	GGATC	3 cut(s)	584, 1284, 3053
AlwNI	CAGNNNCTG	1 cut(s)	668
Ama87I	CYCGRG	2 cut(s)	593, 1800
AoxI	GGCC	4 cut(s)	34, 603, 801, 1797
ApeKI	GCWGC	5 cut(s)	554, 557, 710, 2875, 3104
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
Asp700I	GAANNNNTTC	3 cut(s)	669, 1605, 1873
Asp718I	GGTACC	1 cut(s)	1241
AspLEI	GCGC	2 cut(s)	75, 1042
AspS9I	GGNCC	6 cut(s)	35, 604, 890, 1710, 1798, 2899
AsuHPI	GGTGA	4 cut(s)	223, 506, 512, 2482
AvaI	CYCGRG	2 cut(s)	593, 1800
AvaII	GGWCC	3 cut(s)	890, 1710, 2899
BaeI	ACNNNNGTAYC	4 cut(s)	1233, 1266, 1977, 2010
BanI	GGYRCC	1 cut(s)	1241
BanII	GRGCYC	1 cut(s)	1629
BarI	GAAGNNNNNNTAC	4 cut(s)	1216, 1248, 3005, 3037
BbsI	GAAGAC	6 cut(s)	834, 1842, 2970, 3215, 3219, 3237
Bbv12I	GWGCWC	1 cut(s)	1419
BbvI	GCAGC	5 cut(s)	541, 569, 697, 2862, 3091
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 1574, 1608
BciT130I	CCWGG	8 cut(s)	623, 654, 756, 1421, 2200, 2903, 3256, 3536
BciVI	GTATCC	2 cut(s)	929, 2398
BclI	TGATCA	4 cut(s)	397, 811, 2215, 2845
BcoDI	GTCTC	4 cut(s)	121, 329, 2092, 2354
BcuI	ACTAGT	1 cut(s)	3218
BfaI	CTAG	8 cut(s)	204, 521, 707, 2943, 3041, 3131, 3219, 3570
BfmI	CTRYAG	9 cut(s)	120, 232, 555, 1146, 1377, 1743, 1815, 2603, 3090
BfrI	CTTAAG	2 cut(s)	248, 3506
BfuAI	ACCTGC	1 cut(s)	1153
BfuI	GTATCC	2 cut(s)	929, 2398
BglII	AGATCT	1 cut(s)	2396
BisI	GCNGC	6 cut(s)	60, 555, 558, 711, 2876, 3105
BlsI	GCNGC	6 cut(s)	61, 556, 559, 712, 2877, 3106
BmcAI	AGTACT	1 cut(s)	1753
Bme1390I	CCNGG	8 cut(s)	623, 654, 756, 1421, 2200, 2903, 3256, 3536
Bme18I	GGWCC	3 cut(s)	890, 1710, 2899
BmeRI	GACNNNNNGTC	1 cut(s)	2938
BmeT110I	CYCGRG	2 cut(s)	593, 1800
BmgT120I	GGNCC	6 cut(s)	35, 604, 890, 1710, 1798, 2899
BmiI	GGNNCC	4 cut(s)	744, 1243, 1711, 2570
BmrFI	CCNGG	8 cut(s)	623, 654, 756, 1421, 2200, 2903, 3256, 3536
BmrI	ACTGGG	2 cut(s)	1176, 2380
BmuI	ACTGGG	2 cut(s)	1176, 2380
BoxI	GACNNNNGTC	1 cut(s)	3219
BpiI	GAAGAC	6 cut(s)	834, 1842, 2970, 3215, 3219, 3237
BplI	GAGNNNNNCTC	2 cut(s)	3564, 3596
BpmI	CTGGAG	3 cut(s)	276, 990, 1403
Bpu10I	CCTNAGC	1 cut(s)	738
BpuEI	CTTGAG	2 cut(s)	546, 2400
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	9 cut(s)	594, 621, 1801, 2296, 2460, 2564, 3062, 3183, 3255
BsaWI	WCCGGW	2 cut(s)	856, 1618
Bsc4I	CCNNNNNNNGG	7 cut(s)	932, 1057, 2522, 3068, 3189, 3255, 3256
Bse1I	ACTGG	8 cut(s)	168, 691, 977, 1007, 1182, 1243, 2375, 2818
Bse3DI	GCAATG	2 cut(s)	447, 814
BseBI	CCWGG	8 cut(s)	623, 654, 756, 1421, 2200, 2903, 3256, 3536
BseDI	CCNNGG	9 cut(s)	594, 621, 1801, 2296, 2460, 2564, 3062, 3183, 3255
BseLI	CCNNNNNNNGG	7 cut(s)	932, 1057, 2522, 3068, 3189, 3255, 3256
BseMI	GCAATG	2 cut(s)	447, 814
BseNI	ACTGG	8 cut(s)	168, 691, 977, 1007, 1182, 1243, 2375, 2818
BseRI	GAGGAG	2 cut(s)	1226, 3065
BseXI	GCAGC	5 cut(s)	541, 569, 697, 2862, 3091
BseYI	CCCAGC	2 cut(s)	606, 1706
BsgI	GTGCAG	3 cut(s)	291, 1497, 2153
BshFI	GGCC	4 cut(s)	36, 605, 803, 1799
BshNI	GGYRCC	1 cut(s)	1241
BsiHKAI	GWGCWC	1 cut(s)	1419
BsiHKCI	CYCGRG	2 cut(s)	593, 1800
BsiSI	CCGG	3 cut(s)	857, 1259, 1619
BslFI	GGGAC	6 cut(s)	58, 697, 1042, 1723, 2611, 2880
BslI	CCNNNNNNNGG	7 cut(s)	932, 1057, 2522, 3068, 3189, 3255, 3256
BsmAI	GTCTC	4 cut(s)	121, 329, 2092, 2354
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	6 cut(s)	58, 697, 1042, 1723, 2611, 2880
BsnI	GGCC	4 cut(s)	36, 605, 803, 1799
BsoBI	CYCGRG	2 cut(s)	593, 1800
Bsp1286I	GDGCHC	2 cut(s)	1419, 1629
BspACI	CCGC	9 cut(s)	59, 276, 1513, 1901, 1923, 2053, 2345, 2465, 3250
BspANI	GGCC	4 cut(s)	36, 605, 803, 1799
BspHI	TCATGA	2 cut(s)	1384, 3582
BspLI	GGNNCC	4 cut(s)	744, 1243, 1711, 2570
BspMAI	CTGCAG	6 cut(s)	236, 559, 1150, 1819, 2607, 3094
BspMI	ACCTGC	1 cut(s)	1153
BspPI	GGATC	3 cut(s)	584, 1284, 3053
BspQI	GCTCTTC	2 cut(s)	1115, 1950
BspT107I	GGYRCC	1 cut(s)	1241
BspTI	CTTAAG	2 cut(s)	248, 3506
BsrDI	GCAATG	2 cut(s)	447, 814
BsrI	ACTGG	8 cut(s)	168, 691, 977, 1007, 1182, 1243, 2375, 2818
BssECI	CCNNGG	9 cut(s)	594, 621, 1801, 2296, 2460, 2564, 3062, 3183, 3255
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	3 cut(s)	2296, 2460, 2564
Bst2UI	CCWGG	8 cut(s)	623, 654, 756, 1421, 2200, 2903, 3256, 3536
Bst6I	CTCTTC	3 cut(s)	1115, 1950, 3168
BstACI	GRCGYC	1 cut(s)	114
BstAFI	CTTAAG	2 cut(s)	248, 3506
BstC8I	GCNNGC	8 cut(s)	77, 261, 805, 1345, 1426, 1593, 2018, 2911
BstDSI	CCRYGG	1 cut(s)	3062
BstEII	GGTNACC	1 cut(s)	1195
BstENI	CCTNNNNNAGG	1 cut(s)	2520
BstHHI	GCGC	2 cut(s)	75, 1042
BstMAI	GTCTC	4 cut(s)	121, 329, 2092, 2354
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	8 cut(s)	623, 654, 756, 1421, 2200, 2903, 3256, 3536
BstNSI	RCATGY	5 cut(s)	1347, 1428, 2149, 2626, 3202
BstPAI	GACNNNNGTC	1 cut(s)	3219
BstPI	GGTNACC	1 cut(s)	1195
BstSCI	CCNGG	8 cut(s)	621, 652, 754, 1419, 2198, 2901, 3254, 3534
BstSFI	CTRYAG	9 cut(s)	120, 232, 555, 1146, 1377, 1743, 1815, 2603, 3090
BstV1I	GCAGC	5 cut(s)	541, 569, 697, 2862, 3091
BstV2I	GAAGAC	6 cut(s)	834, 1842, 2970, 3215, 3219, 3237
BstX2I	RGATCY	1 cut(s)	2396
BstYI	RGATCY	1 cut(s)	2396
BsuI	GTATCC	2 cut(s)	929, 2398
BsuRI	GGCC	4 cut(s)	36, 605, 803, 1799
BtgI	CCRYGG	1 cut(s)	3062
BtsI	GCAGTG	4 cut(s)	241, 1629, 1953, 3087
BveI	ACCTGC	1 cut(s)	1153
Cac8I	GCNNGC	8 cut(s)	77, 261, 805, 1345, 1426, 1593, 2018, 2911
CaiI	CAGNNNCTG	1 cut(s)	668
CciI	TCATGA	2 cut(s)	1384, 3582
CfoI	GCGC	2 cut(s)	75, 1042
Cfr13I	GGNCC	6 cut(s)	35, 604, 890, 1710, 1798, 2899
CseI	GACGC	3 cut(s)	103, 2658, 2714
CsiI	ACCWGGT	1 cut(s)	2198
Csp6I	GTAC	9 cut(s)	411, 650, 854, 1242, 1752, 1907, 2070, 2240, 2252
CspCI	CAANNNNNGTGG	2 cut(s)	1041, 1076
CviQI	GTAC	9 cut(s)	411, 650, 854, 1242, 1752, 1907, 2070, 2240, 2252
DraI	TTTAAA	2 cut(s)	1773, 1884
DraIII	CACNNNGTG	4 cut(s)	899, 1414, 1453, 3068
DrdI	GACNNNNNNGTC	1 cut(s)	1676
DriI	GACNNNNNGTC	1 cut(s)	2938
DseDI	GACNNNNNNGTC	1 cut(s)	1676
Eam1104I	CTCTTC	3 cut(s)	1115, 1950, 3168
Eam1105I	GACNNNNNGTC	1 cut(s)	2938
EarI	CTCTTC	3 cut(s)	1115, 1950, 3168
EciI	GGCGGA	2 cut(s)	1890, 2480
Eco130I	CCWWGG	3 cut(s)	2296, 2460, 2564
Eco24I	GRGCYC	1 cut(s)	1629
Eco47I	GGWCC	3 cut(s)	890, 1710, 2899
Eco88I	CYCGRG	2 cut(s)	593, 1800
Eco91I	GGTNACC	1 cut(s)	1195
EcoNI	CCTNNNNNAGG	1 cut(s)	2520
EcoO109I	RGGNCCY	1 cut(s)	2899
EcoO65I	GGTNACC	1 cut(s)	1195
EcoRII	CCWGG	8 cut(s)	621, 652, 754, 1419, 2198, 2901, 3254, 3534
EcoT14I	CCWWGG	3 cut(s)	2296, 2460, 2564
EcoT22I	ATGCAT	1 cut(s)	2624
EcoT38I	GRGCYC	1 cut(s)	1629
ErhI	CCWWGG	3 cut(s)	2296, 2460, 2564
Esp3I	CGTCTC	1 cut(s)	121
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	6 cut(s)	58, 697, 1042, 1723, 2611, 2880
FauI	CCCGC	1 cut(s)	3257
FauNDI	CATATG	1 cut(s)	733
FbaI	TGATCA	4 cut(s)	397, 811, 2215, 2845
FblI	GTMKAC	3 cut(s)	1661, 2650, 3531
Fnu4HI	GCNGC	6 cut(s)	60, 555, 558, 711, 2876, 3105
FriOI	GRGCYC	1 cut(s)	1629
Fsp4HI	GCNGC	6 cut(s)	60, 555, 558, 711, 2876, 3105
FspBI	CTAG	8 cut(s)	204, 521, 707, 2943, 3041, 3131, 3219, 3570
GlaI	GCGC	2 cut(s)	74, 1041
GluI	GCNGC	6 cut(s)	60, 555, 558, 711, 2876, 3105
GsaI	CCCAGC	2 cut(s)	610, 1710
GsuI	CTGGAG	3 cut(s)	276, 990, 1403
HaeIII	GGCC	4 cut(s)	36, 605, 803, 1799
HapII	CCGG	3 cut(s)	857, 1259, 1619
HgaI	GACGC	3 cut(s)	103, 2658, 2714
HhaI	GCGC	2 cut(s)	75, 1042
Hin1I	GRCGYC	1 cut(s)	114
Hin6I	GCGC	2 cut(s)	73, 1040
HinP1I	GCGC	2 cut(s)	73, 1040
HincII	GTYRAC	3 cut(s)	2025, 2651, 2704
HindII	GTYRAC	3 cut(s)	2025, 2651, 2704
HindIII	AAGCTT	5 cut(s)	77, 261, 2911, 3360, 3474
HpaII	CCGG	3 cut(s)	857, 1259, 1619
HphI	GGTGA	4 cut(s)	223, 506, 512, 2482
Hpy99I	CGWCG	2 cut(s)	2049, 2674
HpyAV	CCTTC	4 cut(s)	1473, 2239, 3031, 3182
HpyCH4IV	ACGT	2 cut(s)	895, 2044
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpySE526I	ACGT	2 cut(s)	895, 2044
Hsp92I	GRCGYC	1 cut(s)	114
HspAI	GCGC	2 cut(s)	73, 1040
KpnI	GGTACC	1 cut(s)	1245
Ksp22I	TGATCA	4 cut(s)	397, 811, 2215, 2845
LguI	GCTCTTC	2 cut(s)	1115, 1950
LmnI	GCTCC	6 cut(s)	70, 275, 748, 1422, 1937, 2574
Lsp1109I	GCAGC	5 cut(s)	541, 569, 697, 2862, 3091
MabI	ACCWGGT	1 cut(s)	2198
MaeI	CTAG	8 cut(s)	204, 521, 707, 2943, 3041, 3131, 3219, 3570
MaeII	ACGT	2 cut(s)	895, 2044
MaeIII	GTNAC	8 cut(s)	386, 727, 1195, 1756, 2137, 2275, 2506, 3085
MflI	RGATCY	1 cut(s)	2396
MhlI	GDGCHC	2 cut(s)	1419, 1629
MlyI	GAGTC	5 cut(s)	1223, 1450, 1667, 1793, 1891
MmeI	TCCRAC	5 cut(s)	1140, 1188, 1395, 2622, 2970
Mph1103I	ATGCAT	1 cut(s)	2624
MroXI	GAANNNNTTC	3 cut(s)	669, 1605, 1873
MseI	TTAA	8 cut(s)	249, 993, 1772, 1883, 3338, 3452, 3507, 3558
MslI	CAYNNNNRTG	2 cut(s)	1449, 2144
MspA1I	CMGCKG	1 cut(s)	2875
MspCI	CTTAAG	2 cut(s)	248, 3506
MspI	CCGG	3 cut(s)	857, 1259, 1619
MspR9I	CCNGG	8 cut(s)	623, 654, 756, 1421, 2200, 2903, 3256, 3536
MvaI	CCWGG	8 cut(s)	623, 654, 756, 1421, 2200, 2903, 3256, 3536
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeI	CATATG	1 cut(s)	733
NlaIV	GGNNCC	4 cut(s)	744, 1243, 1711, 2570
NmeAIII	GCCGAG	3 cut(s)	3208, 3300, 3414
NmuCI	GTSAC	3 cut(s)	727, 2137, 3085
NsiI	ATGCAT	1 cut(s)	2624
NspI	RCATGY	5 cut(s)	1347, 1428, 2149, 2626, 3202
PaeI	GCATGC	2 cut(s)	1347, 1428
PagI	TCATGA	2 cut(s)	1384, 3582
PciSI	GCTCTTC	2 cut(s)	1115, 1950
PdmI	GAANNNNTTC	3 cut(s)	669, 1605, 1873
PfeI	GAWTC	9 cut(s)	88, 125, 299, 970, 1364, 1820, 2092, 2285, 2444
PflMI	CCANNNNNTGG	1 cut(s)	3068
PfoI	TCCNGGA	2 cut(s)	754, 2901
PkrI	GCNGC	6 cut(s)	61, 556, 559, 712, 2877, 3106
PleI	GAGTC	5 cut(s)	1222, 1449, 1666, 1792, 1891
PpsI	GAGTC	5 cut(s)	1222, 1449, 1666, 1792, 1891
PpuMI	RGGWCCY	1 cut(s)	2899
PshAI	GACNNNNGTC	1 cut(s)	3219
Psp5II	RGGWCCY	1 cut(s)	2899
Psp6I	CCWGG	8 cut(s)	621, 652, 754, 1419, 2198, 2901, 3254, 3534
PspEI	GGTNACC	1 cut(s)	1195
PspFI	CCCAGC	2 cut(s)	606, 1706
PspGI	CCWGG	8 cut(s)	621, 652, 754, 1419, 2198, 2901, 3254, 3534
PspN4I	GGNNCC	4 cut(s)	744, 1243, 1711, 2570
PspPI	GGNCC	6 cut(s)	35, 604, 890, 1710, 1798, 2899
PspPPI	RGGWCCY	1 cut(s)	2899
PstI	CTGCAG	6 cut(s)	236, 559, 1150, 1819, 2607, 3094
PstNI	CAGNNNCTG	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	2396
PvuII	CAGCTG	1 cut(s)	2875
RsaI	GTAC	9 cut(s)	412, 651, 855, 1243, 1753, 1908, 2071, 2241, 2253
RsaNI	GTAC	9 cut(s)	411, 650, 854, 1242, 1752, 1907, 2070, 2240, 2252
RseI	CAYNNNNRTG	2 cut(s)	1449, 2144
SalI	GTCGAC	1 cut(s)	2649
SapI	GCTCTTC	2 cut(s)	1115, 1950
SaqAI	TTAA	8 cut(s)	249, 993, 1772, 1883, 3338, 3452, 3507, 3558
SatI	GCNGC	6 cut(s)	60, 555, 558, 711, 2876, 3105
Sau96I	GGNCC	6 cut(s)	35, 604, 890, 1710, 1798, 2899
SbfI	CCTGCAGG	1 cut(s)	1150
ScaI	AGTACT	1 cut(s)	1753
SchI	GAGTC	5 cut(s)	1223, 1450, 1667, 1793, 1891
ScrFI	CCNGG	8 cut(s)	623, 654, 756, 1421, 2200, 2903, 3256, 3536
SdaI	CCTGCAGG	1 cut(s)	1150
SduI	GDGCHC	2 cut(s)	1419, 1629
SexAI	ACCWGGT	1 cut(s)	2198
SfcI	CTRYAG	9 cut(s)	120, 232, 555, 1146, 1377, 1743, 1815, 2603, 3090
SinI	GGWCC	3 cut(s)	890, 1710, 2899
SmiMI	CAYNNNNRTG	2 cut(s)	1449, 2144
SmlI	CTYRAG	4 cut(s)	248, 561, 2415, 3506
SmoI	CTYRAG	4 cut(s)	248, 561, 2415, 3506
SpeI	ACTAGT	1 cut(s)	3218
SphI	GCATGC	2 cut(s)	1347, 1428
Sse8387I	CCTGCAGG	1 cut(s)	1150
SsiI	CCGC	9 cut(s)	59, 276, 1513, 1901, 1923, 2053, 2345, 2465, 3250
SspMI	CTAG	8 cut(s)	204, 521, 707, 2943, 3041, 3131, 3219, 3570
StyD4I	CCNGG	8 cut(s)	621, 652, 754, 1419, 2198, 2901, 3254, 3534
StyI	CCWWGG	3 cut(s)	2296, 2460, 2564
TaiI	ACGT	2 cut(s)	898, 2047
TaqI	TCGA	5 cut(s)	282, 2447, 2650, 2672, 2733
TatI	WGTACW	3 cut(s)	410, 1751, 2069
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	9 cut(s)	88, 125, 299, 970, 1364, 1820, 2092, 2285, 2444
Tru1I	TTAA	8 cut(s)	249, 993, 1772, 1883, 3338, 3452, 3507, 3558
Tru9I	TTAA	8 cut(s)	249, 993, 1772, 1883, 3338, 3452, 3507, 3558
TseFI	GTSAC	3 cut(s)	727, 2137, 3085
TseI	GCWGC	5 cut(s)	554, 557, 710, 2875, 3104
Tsp45I	GTSAC	3 cut(s)	727, 2137, 3085
TspGWI	ACGGA	2 cut(s)	2251, 3079
Van91I	CCANNNNNTGG	1 cut(s)	3068
Vha464I	CTTAAG	2 cut(s)	248, 3506
VpaK11BI	GGWCC	3 cut(s)	890, 1710, 2899
XagI	CCTNNNNNAGG	1 cut(s)	2520
XbaI	TCTAGA	2 cut(s)	203, 520
XceI	RCATGY	5 cut(s)	1347, 1428, 2149, 2626, 3202
XmiI	GTMKAC	3 cut(s)	1661, 2650, 3531
XmnI	GAANNNNTTC	3 cut(s)	669, 1605, 1873
XspI	CTAG	8 cut(s)	204, 521, 707, 2943, 3041, 3131, 3219, 3570
ZrmI	AGTACT	1 cut(s)	1753
Zsp2I	ATGCAT	1 cut(s)	2624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.