Conserved region of Rad21 / Rec8 like protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G16270 |
| fragaria_vesca | FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 |
| malus_domestica | MD00G1016700.v1.1 |
| prunus_persica | Prupe.6G366000_v2.0.a1 Prupe.6G366000_v2.0.a1 |
| pyrus_communis | pycom04g22040 pycom10g04620 pycom12g24300 |
| rosa_chinensis | RchiOBHm_Chr3g0447331 |
| rosa_laevigata | RLG00000026010 |
| rosa_multiflora | Rmu_ssc0000473.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00425510 |
| rosa_rugosa | Rorug02G0599600.1 Rorug02G0599700.1 Rorug02G0599800.1 Rorug02G0599900 |
| rosa_samantha | Rh3AG000300 Rh3BG000100 Rh3CG000100 Rh3DG000300 Rh5AG542800 Rh5AG542900 |
| rosa_wichuraiana | Rw3G000010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 7, 306 |
| AcuI | CTGAAG | 1 cut(s) | 93 |
| AfaI | GTAC | 1 cut(s) | 52 |
| AflII | CTTAAG | 1 cut(s) | 179 |
| AluBI | AGCT | 2 cut(s) | 194, 292 |
| AluI | AGCT | 2 cut(s) | 194, 292 |
| Alw26I | GTCTC | 1 cut(s) | 260 |
| ApoI | RAATTY | 2 cut(s) | 7, 306 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 309 |
| AsuHPI | GGTGA | 2 cut(s) | 154, 247 |
| BccI | CCATC | 2 cut(s) | 111, 260 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 179, 213 |
| BcoDI | GTCTC | 1 cut(s) | 260 |
| BfaI | CTAG | 1 cut(s) | 135 |
| BfmI | CTRYAG | 1 cut(s) | 207 |
| BfrI | CTTAAG | 1 cut(s) | 179 |
| BmsI | GCATC | 1 cut(s) | 308 |
| BpmI | CTGGAG | 1 cut(s) | 207 |
| BseGI | GGATG | 1 cut(s) | 323 |
| BseMII | CTCAG | 2 cut(s) | 103, 255 |
| BsmAI | GTCTC | 1 cut(s) | 260 |
| Bsp1407I | TGTACA | 1 cut(s) | 50 |
| Bsp143I | GATC | 1 cut(s) | 274 |
| BspCNI | CTCAG | 2 cut(s) | 102, 256 |
| BspMAI | CTGCAG | 1 cut(s) | 211 |
| BspTI | CTTAAG | 1 cut(s) | 179 |
| BsrGI | TGTACA | 1 cut(s) | 50 |
| BssMI | GATC | 1 cut(s) | 274 |
| BstAFI | CTTAAG | 1 cut(s) | 179 |
| BstAUI | TGTACA | 1 cut(s) | 50 |
| BstC8I | GCNNGC | 1 cut(s) | 192 |
| BstDEI | CTNAG | 2 cut(s) | 89, 264 |
| BstF5I | GGATG | 1 cut(s) | 323 |
| BstKTI | GATC | 1 cut(s) | 277 |
| BstMAI | GTCTC | 1 cut(s) | 260 |
| BstMBI | GATC | 1 cut(s) | 274 |
| BstSFI | CTRYAG | 1 cut(s) | 207 |
| BtsCI | GGATG | 1 cut(s) | 323 |
| BtsI | GCAGTG | 2 cut(s) | 172, 204 |
| BtsIMutI | CAGTG | 2 cut(s) | 172, 204 |
| Cac8I | GCNNGC | 1 cut(s) | 192 |
| Csp6I | GTAC | 1 cut(s) | 51 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 193, 228 |
| CviAII | CATG | 1 cut(s) | 35 |
| CviJI | RGCY | 4 cut(s) | 102, 173, 194, 292 |
| CviKI_1 | RGCY | 4 cut(s) | 102, 173, 194, 292 |
| CviQI | GTAC | 1 cut(s) | 51 |
| DdeI | CTNAG | 2 cut(s) | 89, 264 |
| DpnI | GATC | 1 cut(s) | 276 |
| DpnII | GATC | 1 cut(s) | 274 |
| Eco57I | CTGAAG | 1 cut(s) | 93 |
| FaeI | CATG | 1 cut(s) | 38 |
| FaiI | YATR | 3 cut(s) | 36, 130, 328 |
| FatI | CATG | 1 cut(s) | 34 |
| FspBI | CTAG | 1 cut(s) | 135 |
| GsuI | CTGGAG | 1 cut(s) | 207 |
| Hin1II | CATG | 1 cut(s) | 38 |
| HindIII | AAGCTT | 1 cut(s) | 192 |
| HinfI | GANTC | 2 cut(s) | 56, 230 |
| HphI | GGTGA | 2 cut(s) | 154, 247 |
| Hpy166II | GTNNAC | 1 cut(s) | 51 |
| Hpy188III | TCNNGA | 4 cut(s) | 71, 135, 224, 278 |
| Hpy8I | GTNNAC | 1 cut(s) | 51 |
| HpyCH4V | TGCA | 2 cut(s) | 165, 209 |
| HpyF3I | CTNAG | 2 cut(s) | 89, 264 |
| Hsp92II | CATG | 1 cut(s) | 38 |
| Kzo9I | GATC | 1 cut(s) | 274 |
| LmnI | GCTCC | 2 cut(s) | 206, 244 |
| LpnPI | CCDG | 9 cut(s) | 76, 84, 112, 164, 237, 276, 299, 307, 309 |
| LweI | GCATC | 1 cut(s) | 308 |
| MaeI | CTAG | 1 cut(s) | 135 |
| MalI | GATC | 1 cut(s) | 276 |
| MboI | GATC | 1 cut(s) | 274 |
| MboII | GAAGA | 2 cut(s) | 98, 239 |
| MfeI | CAATTG | 1 cut(s) | 81 |
| MluCI | AATT | 4 cut(s) | 7, 81, 145, 306 |
| MnlI | CCTC | 3 cut(s) | 117, 163, 231 |
| MroXI | GAANNNNTTC | 1 cut(s) | 309 |
| MseI | TTAA | 1 cut(s) | 180 |
| MspCI | CTTAAG | 1 cut(s) | 179 |
| MunI | CAATTG | 1 cut(s) | 81 |
| NdeII | GATC | 1 cut(s) | 274 |
| NlaIII | CATG | 1 cut(s) | 38 |
| PdmI | GAANNNNTTC | 1 cut(s) | 309 |
| PfeI | GAWTC | 2 cut(s) | 56, 230 |
| PstI | CTGCAG | 1 cut(s) | 211 |
| RsaI | GTAC | 1 cut(s) | 52 |
| RsaNI | GTAC | 1 cut(s) | 51 |
| SaqAI | TTAA | 1 cut(s) | 180 |
| Sau3AI | GATC | 1 cut(s) | 274 |
| SetI | ASST | 7 cut(s) | 95, 144, 153, 196, 223, 260, 294 |
| SfaNI | GCATC | 1 cut(s) | 308 |
| SfcI | CTRYAG | 1 cut(s) | 207 |
| SmlI | CTYRAG | 1 cut(s) | 179 |
| SmoI | CTYRAG | 1 cut(s) | 179 |
| Sse9I | AATT | 4 cut(s) | 7, 81, 145, 306 |
| SspMI | CTAG | 1 cut(s) | 135 |
| TasI | AATT | 4 cut(s) | 7, 81, 145, 306 |
| TatI | WGTACW | 1 cut(s) | 50 |
| TfiI | GAWTC | 2 cut(s) | 56, 230 |
| Tru1I | TTAA | 1 cut(s) | 180 |
| Tru9I | TTAA | 1 cut(s) | 180 |
| TscAI | CASTG | 2 cut(s) | 172, 211 |
| TspDTI | ATGAA | 2 cut(s) | 23, 318 |
| TspGWI | ACGGA | 1 cut(s) | 231 |
| TspRI | CASTG | 2 cut(s) | 172, 211 |
| Vha464I | CTTAAG | 1 cut(s) | 179 |
| XapI | RAATTY | 2 cut(s) | 7, 306 |
| XbaI | TCTAGA | 1 cut(s) | 134 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 110 |
| XmnI | GAANNNNTTC | 1 cut(s) | 309 |
| XspI | CTAG | 1 cut(s) | 135 |