Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004515

Physical Location & Seq

Genomic Coordinates Reverse (-)

22965942 .. 22974365

Gene Structure 8424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g22040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGTTTTATTCTCAGTTTATATTGGCCAAGAAAGGTCCTCTTGGGACGATATGGATAGCGGCACATTTGGAGCGCAAGCTTCGCAAGAATCAGGTCGCCGACACCGATATTGGCGTCTCCGTAGATTCTATTCTTTTTCCTGAAGTTCCAATTGCTCTCAGGTTGTCCAGCCATCTTCTGCTTGGTGTTGTGAGGATATATTCTAGAAAGGTGAATTACCTGTTTGATGATTGCAGTGAGGCTTTGCTTAAGATAAAGCAAGCTTTTCGCTCCACTGCAGTTGATTTACCTCCAGAAGAATCTACTGCTCCGTATCATTCCATCACCTTGCCTGAGACTTTTGATCTTGATGATTTTGAGCTACCAGATAATGAAATTTTTCAGGGTAACTATGTTGACCATCATGTCAGTACACGGGAGCAAATAACTCTCCAAGATACAATGGAGGGTGTGGTTTACTCGACATCTCAATTTGGATTTGATGAGCGGTTTGGTGATGGCGATACTTCTCAAATTGGTCTGGAATTTGATGAGGACCTGTTCTTTGGCAAGGTTGCAACTCAAGTGAATGATGGAATTTCAGATGGTGATCCTCAAACATTGGGCCAATCAGTAACACCTCTGGAAAAGCATGATATGTATGACGGGATACCTGGAACTTCAGAAACCATACAAATGAATGGGATTGAAAACCAGAATGATGTCCTAGCTGCAAGTACTGATTTTGTTACGTATGCTCAAGCTCCATCAACTCCTGGACTATTTGAAGAGCCAAACCTGTTTGCGGTTCAGGAGCCTATGGCCTGCAGTGATCAATTGGATTTCGAAGACCATAATTTATCAAATTTAGCATCCATGGGCAGCTCAGAAAATGCTGGTCGTATGTCAGGTCCGCGTTGTGGGGATGATAGTACAATGGTTTCTCCCAAAGAGAATGGCTACCATTTGAGCGATATGGAGATCAAACAAACAAAGCCACAGGAGCATGAGCTGATTGAATCCATTTCTCCCGTATTAGAATGTTTAAATGGGACAGTTGGTGCATTGGATGGCCGAAACAGGATTGAAGATATACACAATGGTATTGTTATAAACAATGAACCACTTATGCCTTTCCTAGATCAAAAGGATGCACAACATGCAGAACCTGCTGGAGTTAGGTTTGATGAAACTGTTGCATCTCCTAGCTGCTCCCAGGTCACATCTGAGTTGGACGACCCTGCTCGTAAGATTAGTTCAAGTAATTCCTGTCCAAGATCGTCAGAAGATTATTTGGAATATCAGCAGACATGTTTAAAGCCTGAAATACAGAATGATGTTGAAACTGCTAATAATATGGAACAATCATGCATACCTAACATTACAGATCCTTTCAAGCCTGTTACTCATGAAGATACGGCATCTGCTGAAGTGCCTGTGCTCTGGGCGTGTGGCTCCCTCCCGAGTCATCGTGATATGCTATCTCCTGCCGATAAAATTTCGGAAATCCCCTTCAACTTACCATCTGAGGTTGTAGGGCCAAGTTCATTGGACAATGCAACATCTTTGGACAATCAATTGGAGAACTTGGATAGGTTTGCCACTTCTAACTTGCCTGCACCTGAAAAGTTGCTCTCTGTACCAGAGGGGTTCACTTCTAAACCAAGTGATTTTCTAGTGGAACCTACTCCTGAAAAAGAAGTCATAGGTGGGGATGCTGGTGATGGTGATGGTGATGGGATTAAACTCATCTCAGGGAAAAAACGTAGTTCCACAGAAAGTACACTGACAGTGCATAGTTTGAATTCAGTTGAATCATTTGGGGAGGCCCGAGGAGAGAGAACTGCAGAATCTATCCCTGATGATGATGATTTATTGTCTTCTATTTTAGTTGGAAGGTCTTCAGTTCTAAAAATGAAACCCACTCCGCCTGCACCTGAAATGATATGCACTAAACGCTCAAGAACTGCTGCCCGCGGTACTGCCTCAAAGAGGAAAGTGCTAATGGATGATACAATGGTCTTGCATGGCGATCAAATACGCCAGCAGCTGACAAATACTGAAGACATACGTCGTGTGCGAAAAAAGGCTCCTTGTACTCGCCCAGAAATTTCAATGATTCAGCGACAATTTTTGGAAGATGCAATTTTTACTGAACCCATATTTACTGGCATGTCGGTGGAACTGATTTATCTGCACACTGGAACATTTGATACAAGTTCAACCAGGGTTTCCGAAAATGAGCAAAACAATGTTTCTGCGGAGCCATTGAACGATGTAGAATCATTTCTGGAGCCAAATGTTACTAAAGAAATTGAACCCCTTCGAAGCACTGAACCTGTAATAATGAGAGATGACTCAGCAGCACAGCCTGCTGGCTTTCGTATTGAGAACGAGAACCAGAAGGAAGAAGATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007275 GO:0008150 GO:0008152 GO:0008278 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070601 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

800

Amino Acids

88.05

Weight (kDa)

4.48

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16270
fragaria_vesca	FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010
malus_domestica	MD00G1016700.v1.1
prunus_persica	Prupe.6G366000_v2.0.a1 Prupe.6G366000_v2.0.a1
pyrus_communis	pycom04g22040 pycom10g04620 pycom12g24300
rosa_chinensis	RchiOBHm_Chr3g0447331
rosa_laevigata	RLG00000026010
rosa_multiflora	Rmu_ssc0000473.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425510
rosa_rugosa	Rorug02G0599600.1 Rorug02G0599700.1 Rorug02G0599800.1 Rorug02G0599900
rosa_samantha	Rh3AG000300 Rh3BG000100 Rh3CG000100 Rh3DG000300 Rh5AG542800 Rh5AG542900
rosa_wichuraiana	Rw3G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1091
AasI	GACNNNNNNGTC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	1156
AccBSI	CCGCTC	1 cut(s)	487
AccII	CGCG	2 cut(s)	895, 1956
AciI	CCGC	8 cut(s)	59, 487, 785, 893, 1907, 1954, 1956, 2240
AclWI	GGATC	2 cut(s)	584, 1361
AcoI	YGGCCR	2 cut(s)	24, 1051
AcsI	RAATTY	7 cut(s)	375, 524, 576, 844, 1476, 1783, 2088
AcuI	CTGAAG	5 cut(s)	162, 645, 1428, 1866, 2061
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	7 cut(s)	412, 718, 913, 1620, 1762, 1960, 2077
AfiI	CCNNNNNNNGG	3 cut(s)	784, 899, 1971
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	1289
AjnI	CCWGG	4 cut(s)	652, 754, 1194, 2204
AluBI	AGCT	9 cut(s)	79, 263, 361, 710, 743, 864, 991, 1188, 2029
AluI	AGCT	9 cut(s)	79, 263, 361, 710, 743, 864, 991, 1188, 2029
Alw21I	GWGCWC	1 cut(s)	1422
Alw26I	GTCTC	2 cut(s)	121, 329
AlwI	GGATC	2 cut(s)	584, 1361
AlwNI	CAGNNNCTG	2 cut(s)	1148, 2029
Ama87I	CYCGRG	2 cut(s)	1441, 1809
AoxI	GGCC	6 cut(s)	24, 604, 801, 1051, 1517, 1806
ApeKI	GCWGC	6 cut(s)	710, 861, 1188, 1949, 2026, 2342
ApoI	RAATTY	7 cut(s)	375, 524, 576, 844, 1476, 1783, 2088
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
Asp700I	GAANNNNTTC	4 cut(s)	378, 1879, 2265, 2301
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	6 cut(s)	35, 535, 604, 890, 1517, 1807
AsuHPI	GGTGA	7 cut(s)	223, 316, 506, 599, 1712, 1718, 1724
AsuII	TTCGAA	2 cut(s)	825, 2305
AvaI	CYCGRG	2 cut(s)	1441, 1809
AvaII	GGWCC	3 cut(s)	35, 535, 890
BaeI	ACNNNNGTAYC	2 cut(s)	1983, 2016
BalI	TGGCCA	1 cut(s)	26
BbsI	GAAGAC	4 cut(s)	834, 1851, 1872, 2049
Bbv12I	GWGCWC	1 cut(s)	1422
BbvI	GCAGC	6 cut(s)	697, 873, 1175, 1936, 2038, 2354
BceAI	ACGGC	1 cut(s)	1413
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	4 cut(s)	654, 756, 1196, 2206
BciVI	GTATCC	1 cut(s)	642
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	121, 329
BfaI	CTAG	5 cut(s)	204, 707, 1118, 1185, 1655
BfmI	CTRYAG	3 cut(s)	276, 805, 1824
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	1156
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	7 cut(s)	60, 711, 862, 1189, 1950, 2027, 2343
BlsI	GCNGC	7 cut(s)	61, 712, 863, 1190, 1951, 2028, 2344
BmcAI	AGTACT	1 cut(s)	718
Bme1390I	CCNGG	4 cut(s)	654, 756, 1196, 2206
Bme18I	GGWCC	3 cut(s)	35, 535, 890
BmeT110I	CYCGRG	2 cut(s)	1441, 1809
BmgT120I	GGNCC	6 cut(s)	35, 535, 604, 890, 1517, 1807
BmiI	GGNNCC	6 cut(s)	795, 1435, 1662, 2070, 2244, 2274
BmrFI	CCNGG	4 cut(s)	654, 756, 1196, 2206
BmsI	GCATC	6 cut(s)	860, 1120, 1187, 1409, 1684, 2110
BoxI	GACNNNNGTC	1 cut(s)	2049
BpiI	GAAGAC	4 cut(s)	834, 1851, 1872, 2049
BpmI	CTGGAG	3 cut(s)	276, 1173, 2291
Bpu14I	TTCGAA	2 cut(s)	825, 2305
BpuEI	CTTGAG	3 cut(s)	546, 723, 1924
Bsa29I	ATCGAT	1 cut(s)	2395
BsaAI	YACGTR	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	588
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	5 cut(s)	855, 1194, 1810, 1954, 2205
Bsc4I	CCNNNNNNNGG	3 cut(s)	784, 899, 1971
Bse1I	ACTGG	2 cut(s)	2152, 2185
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	4 cut(s)	654, 756, 1196, 2206
BseCI	ATCGAT	1 cut(s)	2395
BseDI	CCNNGG	5 cut(s)	855, 1194, 1810, 1954, 2205
BseGI	GGATG	6 cut(s)	851, 910, 1054, 1135, 1699, 1993
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	3 cut(s)	784, 899, 1971
BseMII	CTCAG	8 cut(s)	26, 172, 324, 879, 1197, 1497, 1746, 2352
BseNI	ACTGG	2 cut(s)	2152, 2185
BseRI	GAGGAG	1 cut(s)	1827
BseXI	GCAGC	6 cut(s)	697, 873, 1175, 1936, 2038, 2354
BsgI	GTGCAG	3 cut(s)	1581, 1896, 2159
Bsh1236I	CGCG	2 cut(s)	895, 1956
BshFI	GGCC	6 cut(s)	26, 606, 803, 1053, 1519, 1808
BshVI	ATCGAT	1 cut(s)	2395
BsiHKAI	GWGCWC	1 cut(s)	1422
BsiHKCI	CYCGRG	2 cut(s)	1441, 1809
BslFI	GGGAC	2 cut(s)	58, 1045
BslI	CCNNNNNNNGG	3 cut(s)	784, 899, 1971
BsmAI	GTCTC	2 cut(s)	121, 329
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	2 cut(s)	58, 1045
BsnI	GGCC	6 cut(s)	26, 606, 803, 1053, 1519, 1808
BsoBI	CYCGRG	2 cut(s)	1441, 1809
Bsp119I	TTCGAA	2 cut(s)	825, 2305
Bsp1286I	GDGCHC	1 cut(s)	1422
Bsp143I	GATC	9 cut(s)	343, 589, 811, 960, 1120, 1256, 1366, 2011, 2392
Bsp19I	CCATGG	1 cut(s)	855
BspACI	CCGC	8 cut(s)	59, 487, 785, 893, 1907, 1954, 1956, 2240
BspANI	GGCC	6 cut(s)	26, 606, 803, 1053, 1519, 1808
BspCNI	CTCAG	8 cut(s)	25, 171, 325, 878, 1198, 1498, 1745, 2351
BspDI	ATCGAT	1 cut(s)	2395
BspFNI	CGCG	2 cut(s)	895, 1956
BspHI	TCATGA	1 cut(s)	1387
BspLI	GGNNCC	6 cut(s)	795, 1435, 1662, 2070, 2244, 2274
BspMAI	CTGCAG	3 cut(s)	280, 809, 1828
BspMI	ACCTGC	1 cut(s)	1156
BspPI	GGATC	2 cut(s)	584, 1361
BspQI	GCTCTTC	1 cut(s)	762
BspT104I	TTCGAA	2 cut(s)	825, 2305
BspTI	CTTAAG	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	487
BsrI	ACTGG	2 cut(s)	2152, 2185
BssECI	CCNNGG	5 cut(s)	855, 1194, 1810, 1954, 2205
BssMI	GATC	9 cut(s)	343, 589, 811, 960, 1120, 1256, 1366, 2011, 2392
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	855
Bst2UI	CCWGG	4 cut(s)	654, 756, 1196, 2206
Bst4CI	ACNGT	3 cut(s)	1036, 1174, 1771
Bst6I	CTCTTC	1 cut(s)	762
BstACI	GRCGYC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	248
BstAPI	GCANNNNNTGC	3 cut(s)	1139, 1148, 2351
BstBAI	YACGTR	1 cut(s)	732
BstBI	TTCGAA	2 cut(s)	825, 2305
BstC8I	GCNNGC	9 cut(s)	77, 261, 805, 1596, 1911, 1954, 2024, 2352, 2356
BstDEI	CTNAG	8 cut(s)	12, 158, 333, 865, 1206, 1506, 1732, 2338
BstDSI	CCRYGG	2 cut(s)	855, 1954
BstENI	CCTNNNNNAGG	1 cut(s)	1969
BstF5I	GGATG	6 cut(s)	851, 910, 1054, 1135, 1699, 1993
BstFNI	CGCG	2 cut(s)	895, 1956
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	9 cut(s)	346, 592, 814, 963, 1123, 1259, 1369, 2014, 2395
BstMAI	GTCTC	2 cut(s)	121, 329
BstMBI	GATC	9 cut(s)	343, 589, 811, 960, 1120, 1256, 1366, 2011, 2392
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 982, 1139, 1148, 1935, 2351
BstNI	CCWGG	4 cut(s)	654, 756, 1196, 2206
BstNSI	RCATGY	3 cut(s)	1142, 1293, 2155
BstPAI	GACNNNNGTC	1 cut(s)	2049
BstSCI	CCNGG	4 cut(s)	652, 754, 1194, 2204
BstSFI	CTRYAG	3 cut(s)	276, 805, 1824
BstSNI	TACGTA	1 cut(s)	732
BstUI	CGCG	2 cut(s)	895, 1956
BstV1I	GCAGC	6 cut(s)	697, 873, 1175, 1936, 2038, 2354
BstV2I	GAAGAC	4 cut(s)	834, 1851, 1872, 2049
BstX2I	RGATCY	1 cut(s)	1366
BstYI	RGATCY	1 cut(s)	1366
Bsu15I	ATCGAT	1 cut(s)	2395
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	6 cut(s)	26, 606, 803, 1053, 1519, 1808
BsuTUI	ATCGAT	1 cut(s)	2395
BtgI	CCRYGG	2 cut(s)	855, 1954
BtsCI	GGATG	6 cut(s)	851, 910, 1054, 1135, 1699, 1993
BtsI	GCAGTG	3 cut(s)	241, 273, 814
BtsIMutI	CAGTG	7 cut(s)	241, 273, 814, 1763, 1776, 2178, 2310
BveI	ACCTGC	1 cut(s)	1156
Cac8I	GCNNGC	9 cut(s)	77, 261, 805, 1596, 1911, 1954, 2024, 2352, 2356
CaiI	CAGNNNCTG	2 cut(s)	1148, 2029
CciI	TCATGA	1 cut(s)	1387
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	6 cut(s)	35, 535, 604, 890, 1517, 1807
Cfr42I	CCGCGG	1 cut(s)	1957
ClaI	ATCGAT	1 cut(s)	2395
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	7 cut(s)	411, 717, 912, 1619, 1761, 1959, 2076
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviQI	GTAC	7 cut(s)	411, 717, 912, 1619, 1761, 1959, 2076
DdeI	CTNAG	8 cut(s)	12, 158, 333, 865, 1206, 1506, 1732, 2338
DpnI	GATC	9 cut(s)	345, 591, 813, 962, 1122, 1258, 1368, 2013, 2394
DpnII	GATC	9 cut(s)	343, 589, 811, 960, 1120, 1256, 1366, 2011, 2392
DraI	TTTAAA	2 cut(s)	1026, 1296
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
EaeI	YGGCCR	2 cut(s)	24, 1051
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
EciI	GGCGGA	1 cut(s)	1896
Eco105I	TACGTA	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	855
Eco47I	GGWCC	3 cut(s)	35, 535, 890
Eco57I	CTGAAG	5 cut(s)	162, 645, 1428, 1866, 2061
Eco88I	CYCGRG	2 cut(s)	1441, 1809
EcoNI	CCTNNNNNAGG	1 cut(s)	1969
EcoO109I	RGGNCCY	2 cut(s)	35, 535
EcoRI	GAATTC	1 cut(s)	1783
EcoRII	CCWGG	4 cut(s)	652, 754, 1194, 2204
EcoT14I	CCWWGG	1 cut(s)	855
EcoT22I	ATGCAT	1 cut(s)	1352
ErhI	CCWWGG	1 cut(s)	855
Esp3I	CGTCTC	1 cut(s)	121
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	2 cut(s)	58, 1045
FauI	CCCGC	1 cut(s)	1961
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	7 cut(s)	60, 711, 862, 1189, 1950, 2027, 2343
FokI	GGATG	6 cut(s)	838, 917, 1061, 1142, 1706, 2000
Fsp4HI	GCNGC	7 cut(s)	60, 711, 862, 1189, 1950, 2027, 2343
FspBI	CTAG	5 cut(s)	204, 707, 1118, 1185, 1655
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	7 cut(s)	60, 711, 862, 1189, 1950, 2027, 2343
GsuI	CTGGAG	3 cut(s)	276, 1173, 2291
HaeIII	GGCC	6 cut(s)	26, 606, 803, 1053, 1519, 1808
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	2 cut(s)	77, 261
HphI	GGTGA	7 cut(s)	223, 316, 506, 599, 1712, 1718, 1724
Hpy166II	GTNNAC	5 cut(s)	397, 413, 457, 1632, 1763
Hpy188I	TCNGA	8 cut(s)	583, 664, 868, 1207, 1264, 1483, 1507, 2215
Hpy8I	GTNNAC	5 cut(s)	397, 413, 457, 1632, 1763
Hpy99I	CGWCG	1 cut(s)	2055
HpyAV	CCTTC	4 cut(s)	1501, 1869, 2312, 2377
HpyCH4III	ACNGT	3 cut(s)	1036, 1174, 1771
HpyCH4IV	ACGT	3 cut(s)	731, 1744, 2050
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 982, 1139, 1148, 1935, 2351
HpyF3I	CTNAG	8 cut(s)	12, 158, 333, 865, 1206, 1506, 1732, 2338
HpySE526I	ACGT	3 cut(s)	731, 1744, 2050
Hsp92I	GRCGYC	1 cut(s)	114
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	811
KspI	CCGCGG	1 cut(s)	1957
Kzo9I	GATC	9 cut(s)	343, 589, 811, 960, 1120, 1256, 1366, 2011, 2392
LguI	GCTCTTC	1 cut(s)	762
Lsp1109I	GCAGC	6 cut(s)	697, 873, 1175, 1936, 2038, 2354
LweI	GCATC	6 cut(s)	860, 1120, 1187, 1409, 1684, 2110
MaeI	CTAG	5 cut(s)	204, 707, 1118, 1185, 1655
MaeII	ACGT	3 cut(s)	731, 1744, 2050
MaeIII	GTNAC	6 cut(s)	386, 613, 727, 1198, 1381, 2281
MalI	GATC	9 cut(s)	345, 591, 813, 962, 1122, 1258, 1368, 2013, 2394
MbiI	CCGCTC	1 cut(s)	487
MboI	GATC	9 cut(s)	343, 589, 811, 960, 1120, 1256, 1366, 2011, 2392
MfeI	CAATTG	3 cut(s)	150, 815, 1556
MflI	RGATCY	1 cut(s)	1366
MhlI	GDGCHC	1 cut(s)	1422
MlsI	TGGCCA	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	2 cut(s)	1453, 2330
MmeI	TCCRAC	2 cut(s)	1191, 1852
Mox20I	TGGCCA	1 cut(s)	26
Mph1103I	ATGCAT	1 cut(s)	1352
MroXI	GAANNNNTTC	4 cut(s)	378, 1879, 2265, 2301
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	4 cut(s)	249, 1025, 1295, 1722
MslI	CAYNNNNRTG	2 cut(s)	674, 2156
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	2 cut(s)	1956, 2029
MspCI	CTTAAG	1 cut(s)	248
MspR9I	CCNGG	4 cut(s)	654, 756, 1196, 2206
MunI	CAATTG	3 cut(s)	150, 815, 1556
MvaI	CCWGG	4 cut(s)	654, 756, 1196, 2206
MvnI	CGCG	2 cut(s)	895, 1956
MwoI	GCNNNNNNNGC	6 cut(s)	81, 982, 1139, 1148, 1935, 2351
NcoI	CCATGG	1 cut(s)	855
NdeII	GATC	9 cut(s)	343, 589, 811, 960, 1120, 1256, 1366, 2011, 2392
NlaIV	GGNNCC	6 cut(s)	795, 1435, 1662, 2070, 2244, 2274
NmuCI	GTSAC	1 cut(s)	1198
NsiI	ATGCAT	1 cut(s)	1352
NspI	RCATGY	3 cut(s)	1142, 1293, 2155
NspV	TTCGAA	2 cut(s)	825, 2305
PagI	TCATGA	1 cut(s)	1387
PciI	ACATGT	1 cut(s)	1289
PciSI	GCTCTTC	1 cut(s)	762
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 2056
PdmI	GAANNNNTTC	4 cut(s)	378, 1879, 2265, 2301
PfeI	GAWTC	8 cut(s)	88, 125, 299, 998, 1793, 1829, 2098, 2261
PfoI	TCCNGGA	1 cut(s)	754
PkrI	GCNGC	7 cut(s)	61, 712, 863, 1190, 1951, 2028, 2344
PleI	GAGTC	2 cut(s)	1452, 2330
PpsI	GAGTC	2 cut(s)	1452, 2330
Ppu21I	YACGTR	1 cut(s)	732
PpuMI	RGGWCCY	2 cut(s)	35, 535
PscI	ACATGT	1 cut(s)	1289
PshAI	GACNNNNGTC	1 cut(s)	2049
PsiI	TTATAA	1 cut(s)	1091
Psp5II	RGGWCCY	2 cut(s)	35, 535
Psp6I	CCWGG	4 cut(s)	652, 754, 1194, 2204
PspGI	CCWGG	4 cut(s)	652, 754, 1194, 2204
PspN4I	GGNNCC	6 cut(s)	795, 1435, 1662, 2070, 2244, 2274
PspPI	GGNCC	6 cut(s)	35, 535, 604, 890, 1517, 1807
PspPPI	RGGWCCY	2 cut(s)	35, 535
PsrI	GAACNNNNNNTAC	4 cut(s)	1219, 1251, 2176, 2208
PstI	CTGCAG	3 cut(s)	280, 809, 1828
PstNI	CAGNNNCTG	2 cut(s)	1148, 2029
PsuI	RGATCY	1 cut(s)	1366
PvuII	CAGCTG	1 cut(s)	2029
RsaI	GTAC	7 cut(s)	412, 718, 913, 1620, 1762, 1960, 2077
RsaNI	GTAC	7 cut(s)	411, 717, 912, 1619, 1761, 1959, 2076
RseI	CAYNNNNRTG	2 cut(s)	674, 2156
SacII	CCGCGG	1 cut(s)	1957
SapI	GCTCTTC	1 cut(s)	762
SaqAI	TTAA	4 cut(s)	249, 1025, 1295, 1722
SatI	GCNGC	7 cut(s)	60, 711, 862, 1189, 1950, 2027, 2343
Sau3AI	GATC	9 cut(s)	343, 589, 811, 960, 1120, 1256, 1366, 2011, 2392
Sau96I	GGNCC	6 cut(s)	35, 535, 604, 890, 1517, 1807
ScaI	AGTACT	1 cut(s)	718
SchI	GAGTC	2 cut(s)	1453, 2330
ScrFI	CCNGG	4 cut(s)	654, 756, 1196, 2206
SduI	GDGCHC	1 cut(s)	1422
SfaNI	GCATC	6 cut(s)	860, 1120, 1187, 1409, 1684, 2110
SfcI	CTRYAG	3 cut(s)	276, 805, 1824
Sfr303I	CCGCGG	1 cut(s)	1957
SfuI	TTCGAA	2 cut(s)	825, 2305
SgrBI	CCGCGG	1 cut(s)	1957
SinI	GGWCC	3 cut(s)	35, 535, 890
SmiMI	CAYNNNNRTG	2 cut(s)	674, 2156
SmlI	CTYRAG	4 cut(s)	248, 561, 738, 1939
SmoI	CTYRAG	4 cut(s)	248, 561, 738, 1939
SnaBI	TACGTA	1 cut(s)	732
SsiI	CCGC	8 cut(s)	59, 487, 785, 893, 1907, 1954, 1956, 2240
SspMI	CTAG	5 cut(s)	204, 707, 1118, 1185, 1655
StyD4I	CCNGG	4 cut(s)	652, 754, 1194, 2204
StyI	CCWWGG	1 cut(s)	855
TaaI	ACNGT	3 cut(s)	1036, 1174, 1771
TaiI	ACGT	3 cut(s)	734, 1747, 2053
TaqI	TCGA	4 cut(s)	461, 825, 2305, 2395
TatI	WGTACW	5 cut(s)	410, 716, 911, 1760, 2075
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	8 cut(s)	88, 125, 299, 998, 1793, 1829, 2098, 2261
Tru1I	TTAA	4 cut(s)	249, 1025, 1295, 1722
Tru9I	TTAA	4 cut(s)	249, 1025, 1295, 1722
TscAI	CASTG	7 cut(s)	241, 280, 814, 1770, 1776, 2185, 2317
TseFI	GTSAC	1 cut(s)	1198
TseI	GCWGC	6 cut(s)	710, 861, 1188, 1949, 2026, 2342
Tsp45I	GTSAC	1 cut(s)	1198
TspDTI	ATGAA	7 cut(s)	387, 692, 1113, 1182, 1404, 1515, 1910
TspGWI	ACGGA	2 cut(s)	109, 300
TspRI	CASTG	7 cut(s)	241, 280, 814, 1770, 1776, 2185, 2317
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	3 cut(s)	35, 535, 890
XagI	CCTNNNNNAGG	1 cut(s)	1969
XapI	RAATTY	7 cut(s)	375, 524, 576, 844, 1476, 1783, 2088
XbaI	TCTAGA	1 cut(s)	203
XceI	RCATGY	3 cut(s)	1142, 1293, 2155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmnI	GAANNNNTTC	4 cut(s)	378, 1879, 2265, 2301
XspI	CTAG	5 cut(s)	204, 707, 1118, 1185, 1655
ZrmI	AGTACT	1 cut(s)	718
Zsp2I	ATGCAT	1 cut(s)	1352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.