Rh5AG542900

Conserved region of Rad21 / Rec8 like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
93273794 .. 93277602
3809 bp
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UTR
Exon/CDS
Intron
Rh5AG542900.1

Sequence Viewer

Length: 1470 bp
ATGGAGTCTACACCTGACAAAGAAGTCTTTGGTGGGGATGGTGTTGATGGTGCTGGGACCAAACTCATCTCAGGGAAGAAACGCAGTTCTACTGAAAGTACTGTAACAGTTCAAAGTTTAAATTCAGTTGAGTCATTTGGGGAGGCCCGAGGAAAGCGAACTGCAGATTCCATCCCTGATGATGATGATTTATTGTCTTCTATTTTAGTTGGGAGAAAATCTTCAGTTTTAAAACTGAAACCGACTCCGCCTGTACCTGAAATGAAAACCGCAAAACGCTCCCGAACTGCTGTTCGTGGCACTGCCTCAAAGAGAAAAGTGCTAATGGATGATGCAATGGTTCTGCATGGCGATACAATACGCCAGCAGTTGACAAATACCGAAGATATACGTCGTGTGCGGAAAAAAGCCTCTTGTACTCGCCCAGAAATTTCAATGATTCAGAGACAAAATTTGAAAGATGAAATTTTCATTGAACCCATTGTCACAGGCATGTCGGCGGAACTGACATTTCTGCACACTGAGAATTTTGATCTGAGTAGAACCAGGTTTTCTGAAGATGATCAAGACAATGCTTCTGACGAGGTACTGAAGGATGTACGGTATTCCGTGAGGTCAAATGTTACTGAAGAATCTGAAATCCTTGGAAGCACTGAGCCTGTAATAGTAAGAGATGATGCAGAAGCACAAGCGGACATTGTTATTGAGACTAAAAACTGGGGGATGCAAGATCATAACCTAAGATCTCAGGATACTGATGCTCAAGGGCAGGGGATTACCAACCCAGAAGAATCGAAGCATGAACCCTTGGCGGAGGTGAGTGAAATGGAAATTGATGTAAACAATGCAGAAGTTACCTATCCTGTTTCAGGAGATATATACGATATGCCATCTGAAGATAATATCCAGCCAAGGCTCCTGAATAAAATTGATGAGGAAGATGCTTCTCTGCAGATGGGTGCATTATGCATGTCCCCAGATGAAAAAGCAGATGTTCAGATGGGTTTTTCTGAACTTACTGACATAAATTCTACACTTGCAACCGTATCTCTTGAAACTGGCGACAACAAAAATCTGAGTTCTTCAAATGATCAATCTATGGAAGAAATGGGACGTGAGCTGCATATTTTGAATGAAAATGAGGTCCTGGATGCAAGCTTTGGTTGTGATGACAAGGACACCAAGTCTAGTTGTATGCTTGGTGGAGAAGACAACATTGGTTCTACAATTTCGTTGGAACTTGATGTGGATGCAAAGTATATTTCCTTCAGTGATAAGGAAAACCTAGAACATGAGGAGGCTGATCCACGGAGTGGAACTGAGGCAGAAGTCACTGCAGACCACCCTGCTGCAAATTGTGGAGATTGTGGCGATCTAGTTTTTGGAAATGATACAGGTTCACTTTTTAATCTTCTTCATTGGTTGACACTTCCTCATTTCTATGATCTTGTCTGCCTGAATTATACTTAA

Protein Analysis

489

Amino Acids

53.85

Weight (kDa)

4.41

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 1313
AccI GTMKAC 1 cut(s) 8
AciI CCGC 6 cut(s) 248, 270, 400, 500, 692, 812
AclWI GGATC 1 cut(s) 1298
AcsI RAATTY 6 cut(s) 121, 429, 451, 465, 526, 1027
AcuI CTGAAG 6 cut(s) 207, 576, 611, 648, 915, 1252
AdeI CACNNNGTG 1 cut(s) 1313
AfaI GTAC 5 cut(s) 100, 255, 418, 588, 600
AfiI CCNNNNNNNGG 2 cut(s) 869, 1313
AgsI TTSAA 7 cut(s) 113, 435, 457, 476, 1055, 1086, 1132
AhdI GACNNNNNGTC 1 cut(s) 1183
AjiI CACGTC 1 cut(s) 1115
AjnI CCWGG 2 cut(s) 545, 1146
AjuI GAANNNNNNNTTGG 2 cut(s) 1200, 1232
AluBI AGCT 2 cut(s) 1120, 1158
AluI AGCT 2 cut(s) 1120, 1158
Alw26I GTCTC 2 cut(s) 439, 701
AlwI GGATC 1 cut(s) 1298
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 1120, 1349
ApoI RAATTY 6 cut(s) 121, 429, 451, 465, 526, 1027
Asp700I GAANNNNTTC 1 cut(s) 220
AspS9I GGNCC 3 cut(s) 57, 145, 1144
AsuHPI GGTGA 1 cut(s) 829
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 2 cut(s) 57, 1144
BarI GAAGNNNNNNTAC 2 cut(s) 1250, 1282
BbsI GAAGAC 2 cut(s) 189, 1215
BbvI GCAGC 2 cut(s) 1107, 1336
BccI CCATC 6 cut(s) 32, 41, 179, 898, 949, 994
BciT130I CCWGG 2 cut(s) 547, 1148
BciVI GTATCC 1 cut(s) 745
BclI TGATCA 2 cut(s) 562, 1090
BcoDI GTCTC 2 cut(s) 439, 701
BfaI CTAG 3 cut(s) 1188, 1286, 1376
BfmI CTRYAG 3 cut(s) 162, 950, 1335
BfuI GTATCC 1 cut(s) 745
BglII AGATCT 1 cut(s) 743
BisI GCNGC 2 cut(s) 1121, 1350
BlsI GCNGC 2 cut(s) 1122, 1351
BmcAI AGTACT 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 547, 1148
Bme18I GGWCC 2 cut(s) 57, 1144
BmeRI GACNNNNNGTC 1 cut(s) 1183
BmeT110I CYCGRG 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 1115
BmgT120I GGNCC 3 cut(s) 57, 145, 1144
BmiI GGNNCC 2 cut(s) 58, 917
BmrFI CCNGG 2 cut(s) 547, 1148
BmrI ACTGGG 1 cut(s) 727
BmsI GCATC 7 cut(s) 322, 667, 714, 748, 931, 1141, 1240
BmuI ACTGGG 1 cut(s) 727
BpiI GAAGAC 2 cut(s) 189, 1215
BpuEI CTTGAG 1 cut(s) 747
BsaJI CCNNGG 5 cut(s) 148, 643, 807, 911, 1307
Bsc4I CCNNNNNNNGG 2 cut(s) 869, 1313
Bse1I ACTGG 2 cut(s) 722, 1063
Bse3DI GCAATG 1 cut(s) 342
BseBI CCWGG 2 cut(s) 547, 1148
BseDI CCNNGG 5 cut(s) 148, 643, 807, 911, 1307
BseGI GGATG 7 cut(s) 43, 171, 334, 601, 729, 1156, 1255
BseLI CCNNNNNNNGG 2 cut(s) 869, 1313
BseMI GCAATG 1 cut(s) 342
BseMII CTCAG 7 cut(s) 84, 513, 527, 645, 761, 1067, 1311
BseNI ACTGG 2 cut(s) 722, 1063
BseRI GAGGAG 1 cut(s) 1310
BseXI GCAGC 2 cut(s) 1107, 1336
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 500
BshFI GGCC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 147
BslFI GGGAC 3 cut(s) 70, 958, 1125
BslI CCNNNNNNNGG 2 cut(s) 869, 1313
BsmAI GTCTC 2 cut(s) 439, 701
BsmFI GGGAC 3 cut(s) 70, 958, 1125
BsnI GGCC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 147
Bsp143I GATC 8 cut(s) 532, 562, 730, 743, 1090, 1303, 1372, 1444
BspACI CCGC 6 cut(s) 248, 270, 400, 500, 692, 812
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 7 cut(s) 83, 514, 528, 646, 760, 1068, 1312
BspLI GGNNCC 2 cut(s) 58, 917
BspMAI CTGCAG 3 cut(s) 166, 954, 1339
BspPI GGATC 1 cut(s) 1298
BsrDI GCAATG 1 cut(s) 342
BsrI ACTGG 2 cut(s) 722, 1063
BssECI CCNNGG 5 cut(s) 148, 643, 807, 911, 1307
BssMI GATC 8 cut(s) 532, 562, 730, 743, 1090, 1303, 1372, 1444
BssT1I CCWWGG 3 cut(s) 643, 807, 911
Bst2UI CCWGG 2 cut(s) 547, 1148
Bst4CI ACNGT 4 cut(s) 103, 109, 603, 1045
BstC8I GCNNGC 2 cut(s) 365, 1156
BstDEI CTNAG 8 cut(s) 70, 522, 536, 654, 740, 747, 1076, 1320
BstDSI CCRYGG 1 cut(s) 1307
BstENI CCTNNNNNAGG 1 cut(s) 867
BstF5I GGATG 7 cut(s) 43, 171, 334, 601, 729, 1156, 1255
BstKTI GATC 8 cut(s) 535, 565, 733, 746, 1093, 1306, 1375, 1447
BstMAI GTCTC 2 cut(s) 439, 701
BstMBI GATC 8 cut(s) 532, 562, 730, 743, 1090, 1303, 1372, 1444
BstNI CCWGG 2 cut(s) 547, 1148
BstNSI RCATGY 2 cut(s) 496, 973
BstSCI CCNGG 2 cut(s) 545, 1146
BstSFI CTRYAG 3 cut(s) 162, 950, 1335
BstV1I GCAGC 2 cut(s) 1107, 1336
BstV2I GAAGAC 2 cut(s) 189, 1215
BstX2I RGATCY 1 cut(s) 743
BstYI RGATCY 1 cut(s) 743
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 1307
BtrI CACGTC 1 cut(s) 1115
BtsCI GGATG 7 cut(s) 43, 171, 334, 601, 729, 1156, 1255
BtsI GCAGTG 2 cut(s) 300, 1332
BtsIMutI CAGTG 5 cut(s) 300, 519, 651, 1276, 1332
Cac8I GCNNGC 2 cut(s) 365, 1156
Cfr13I GGNCC 3 cut(s) 57, 145, 1144
CsiI ACCWGGT 1 cut(s) 545
Csp6I GTAC 5 cut(s) 99, 254, 417, 587, 599
CviAII CATG 5 cut(s) 347, 493, 800, 970, 1292
CviJI RGCY 8 cut(s) 146, 410, 658, 910, 916, 1120, 1158, 1301
CviKI_1 RGCY 8 cut(s) 146, 410, 658, 910, 916, 1120, 1158, 1301
CviQI GTAC 5 cut(s) 99, 254, 417, 587, 599
DdeI CTNAG 8 cut(s) 70, 522, 536, 654, 740, 747, 1076, 1320
DpnI GATC 8 cut(s) 534, 564, 732, 745, 1092, 1305, 1374, 1446
DpnII GATC 8 cut(s) 532, 562, 730, 743, 1090, 1303, 1372, 1444
DraI TTTAAA 2 cut(s) 120, 231
DraIII CACNNNGTG 1 cut(s) 1313
DrdI GACNNNNNNGTC 1 cut(s) 23
DriI GACNNNNNGTC 1 cut(s) 1183
DseDI GACNNNNNNGTC 1 cut(s) 23
Eam1105I GACNNNNNGTC 1 cut(s) 1183
EciI GGCGGA 3 cut(s) 237, 515, 827
Eco130I CCWWGG 3 cut(s) 643, 807, 911
Eco47I GGWCC 2 cut(s) 57, 1144
Eco57I CTGAAG 6 cut(s) 207, 576, 611, 648, 915, 1252
Eco88I CYCGRG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 867
EcoO109I RGGNCCY 1 cut(s) 1144
EcoRII CCWGG 2 cut(s) 545, 1146
EcoT14I CCWWGG 3 cut(s) 643, 807, 911
EcoT22I ATGCAT 1 cut(s) 971
ErhI CCWWGG 3 cut(s) 643, 807, 911
FaeI CATG 5 cut(s) 350, 496, 803, 973, 1295
FaqI GGGAC 3 cut(s) 70, 958, 1125
FatI CATG 5 cut(s) 346, 492, 799, 969, 1291
FbaI TGATCA 2 cut(s) 562, 1090
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 1121, 1350
FokI GGATG 7 cut(s) 50, 158, 341, 608, 736, 1163, 1262
Fsp4HI GCNGC 2 cut(s) 1121, 1350
FspBI CTAG 3 cut(s) 1188, 1286, 1376
GluI GCNGC 2 cut(s) 1121, 1350
GsaI CCCAGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 146
Hin1II CATG 5 cut(s) 350, 496, 803, 973, 1295
HincII GTYRAC 2 cut(s) 372, 1425
HindII GTYRAC 2 cut(s) 372, 1425
HindIII AAGCTT 1 cut(s) 1156
HinfI GANTC 7 cut(s) 5, 131, 167, 244, 439, 632, 791
HphI GGTGA 1 cut(s) 829
Hpy166II GTNNAC 5 cut(s) 9, 372, 841, 1400, 1425
Hpy188I TCNGA 9 cut(s) 444, 537, 556, 580, 637, 895, 999, 1012, 1077
Hpy188III TCNNGA 6 cut(s) 282, 566, 749, 870, 919, 1052
Hpy8I GTNNAC 5 cut(s) 9, 372, 841, 1400, 1425
Hpy99I CGWCG 1 cut(s) 396
HpyAV CCTTC 2 cut(s) 586, 1276
HpyCH4III ACNGT 4 cut(s) 103, 109, 603, 1045
HpyCH4IV ACGT 2 cut(s) 391, 1114
HpyF3I CTNAG 8 cut(s) 70, 522, 536, 654, 740, 747, 1076, 1320
HpySE526I ACGT 2 cut(s) 391, 1114
Hsp92II CATG 5 cut(s) 350, 496, 803, 973, 1295
Ksp22I TGATCA 2 cut(s) 562, 1090
Kzo9I GATC 8 cut(s) 532, 562, 730, 743, 1090, 1303, 1372, 1444
LmnI GCTCC 2 cut(s) 284, 921
Lsp1109I GCAGC 2 cut(s) 1107, 1336
LweI GCATC 7 cut(s) 322, 667, 714, 748, 931, 1141, 1240
MabI ACCWGGT 1 cut(s) 545
MaeI CTAG 3 cut(s) 1188, 1286, 1376
MaeII ACGT 2 cut(s) 391, 1114
MaeIII GTNAC 5 cut(s) 103, 484, 622, 853, 1330
MalI GATC 8 cut(s) 534, 564, 732, 745, 1092, 1305, 1374, 1446
MboI GATC 8 cut(s) 532, 562, 730, 743, 1090, 1303, 1372, 1444
MflI RGATCY 1 cut(s) 743
MlyI GAGTC 3 cut(s) 14, 140, 238
MmeI TCCRAC 1 cut(s) 1215
Mph1103I ATGCAT 1 cut(s) 971
MroXI GAANNNNTTC 1 cut(s) 220
MseI TTAA 4 cut(s) 119, 230, 1407, 1468
MslI CAYNNNNRTG 2 cut(s) 491, 1440
MspR9I CCNGG 2 cut(s) 547, 1148
MvaI CCWGG 2 cut(s) 547, 1148
NdeII GATC 8 cut(s) 532, 562, 730, 743, 1090, 1303, 1372, 1444
NlaIII CATG 5 cut(s) 350, 496, 803, 973, 1295
NlaIV GGNNCC 2 cut(s) 58, 917
NmuCI GTSAC 2 cut(s) 484, 1330
NsiI ATGCAT 1 cut(s) 971
NspI RCATGY 2 cut(s) 496, 973
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 4 cut(s) 167, 439, 632, 791
PflMI CCANNNNNTGG 1 cut(s) 1313
PfoI TCCNGGA 1 cut(s) 1146
PkrI GCNGC 2 cut(s) 1122, 1351
PleI GAGTC 3 cut(s) 13, 139, 238
PpsI GAGTC 3 cut(s) 13, 139, 238
PpuMI RGGWCCY 1 cut(s) 1144
Psp5II RGGWCCY 1 cut(s) 1144
Psp6I CCWGG 2 cut(s) 545, 1146
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 2 cut(s) 545, 1146
PspN4I GGNNCC 2 cut(s) 58, 917
PspPI GGNCC 3 cut(s) 57, 145, 1144
PspPPI RGGWCCY 1 cut(s) 1144
PstI CTGCAG 3 cut(s) 166, 954, 1339
PsuI RGATCY 1 cut(s) 743
RsaI GTAC 5 cut(s) 100, 255, 418, 588, 600
RsaNI GTAC 5 cut(s) 99, 254, 417, 587, 599
RseI CAYNNNNRTG 2 cut(s) 491, 1440
SaqAI TTAA 4 cut(s) 119, 230, 1407, 1468
SatI GCNGC 2 cut(s) 1121, 1350
Sau3AI GATC 8 cut(s) 532, 562, 730, 743, 1090, 1303, 1372, 1444
Sau96I GGNCC 3 cut(s) 57, 145, 1144
ScaI AGTACT 1 cut(s) 100
SchI GAGTC 3 cut(s) 14, 140, 238
ScrFI CCNGG 2 cut(s) 547, 1148
SexAI ACCWGGT 1 cut(s) 545
SfaNI GCATC 7 cut(s) 322, 667, 714, 748, 931, 1141, 1240
SfcI CTRYAG 3 cut(s) 162, 950, 1335
SinI GGWCC 2 cut(s) 57, 1144
SmiMI CAYNNNNRTG 2 cut(s) 491, 1440
SmlI CTYRAG 1 cut(s) 762
SmoI CTYRAG 1 cut(s) 762
SsiI CCGC 6 cut(s) 248, 270, 400, 500, 692, 812
SspMI CTAG 3 cut(s) 1188, 1286, 1376
StyD4I CCNGG 2 cut(s) 545, 1146
StyI CCWWGG 3 cut(s) 643, 807, 911
TaaI ACNGT 4 cut(s) 103, 109, 603, 1045
TaiI ACGT 2 cut(s) 394, 1117
TaqI TCGA 1 cut(s) 794
TatI WGTACW 2 cut(s) 98, 416
TfiI GAWTC 4 cut(s) 167, 439, 632, 791
Tru1I TTAA 4 cut(s) 119, 230, 1407, 1468
Tru9I TTAA 4 cut(s) 119, 230, 1407, 1468
TscAI CASTG 5 cut(s) 307, 526, 658, 1276, 1339
TseFI GTSAC 2 cut(s) 484, 1330
TseI GCWGC 2 cut(s) 1120, 1349
Tsp45I GTSAC 2 cut(s) 484, 1330
TspDTI ATGAA 7 cut(s) 278, 460, 477, 816, 996, 1149, 1406
TspGWI ACGGA 2 cut(s) 598, 1324
TspRI CASTG 5 cut(s) 307, 526, 658, 1276, 1339
Van91I CCANNNNNTGG 1 cut(s) 1313
VpaK11BI GGWCC 2 cut(s) 57, 1144
XagI CCTNNNNNAGG 1 cut(s) 867
XapI RAATTY 6 cut(s) 121, 429, 451, 465, 526, 1027
XceI RCATGY 2 cut(s) 496, 973
XmiI GTMKAC 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 3 cut(s) 1188, 1286, 1376
ZrmI AGTACT 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.