Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004515

Physical Location & Seq

Genomic Coordinates Reverse (-)

3678 .. 14550

Gene Structure 10873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00010.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3420 bp

ATGTTTTACTCGCAGTTTATATTGGCAAAAAAAGGCCCACTTGGGACGATATGGATAGCGGCACATTTGGAGCGCAAGCTTCGCAAGAATCAGGTTGCCGACACCGATATTGGCGTCTCTGTAGATTCTATTCTTTTTCCTGAAGTTCCGATTGCTCTCCGGTTGTCCAGTCATCTTCTGCTTGGTGTTGTGAGGATATATTCTAGAAAGGTGAATTACCTTTTTGATGACTGCAGTGAGGCTTTGCTTAAGATTAAGCAAGCTTTTCGCTCCACCGCAGTTGATTTACCACCAGAAGAATCAACTGCACCGTATCATTCTATCACCTTGCCTGAGACTTTTGATCTTGATGATTTTGAGCTACCAGATAATGAAATTTTTCAGGGTAATTATGTTGATCATCATGTCAGTACAAGGGAGCAGATTACTCTCCAAGATGCAATGGAGGGTGTGGTTTACTCGACATCTCAGTTCGGATTGGATGAGCGATTTGGGGATGGTGATACTTCTCAAATTGGTCTAGATTTTGATGAGGACTTGTTCTTAGGCCAGGCTGCAGCTCAAGGGAATGATGCAATTTCCGGAGATCCTCAGGCATTGACTCCGCCAGCAACACCCCTGGAAAAGCATGAAGTTTTTGAGGGAGTACCTGGAACTTCAGAAACTGTGCAAATGAATGAGACTGGAAACCAGGCTCCGTCGACTCCCGGATTATTTGAAGAGCCAAACTTGTCTAGTGTTCAGGAAGCTATGGCCTGCAATGATCACTTGGATTTGGAAGACCATGGTTTATCAAATTTACCAGTACCGGAAGGCACAGAAAATGCTTGTAGCGAGTTAGGTCCACGTTGCGAGGATAATAATAATACAATAAATGTGCCTGAGAATGGATACAATGTGGGAGATCTGGAGATGAAACCACCAGTGCATGAGCAGATTAAACCTGTATCTCCAGCATTAGAATGTTCAAATGGGACAGTTGGTGCACTGGATTTCCCAAACAGGGTGGAAGATATAAATTGTGGTATTGTAATTAACAGTGAAGCAACTATGCTCACAGAAAAAAAGGGTGAACAATGTGTAGAACCTGCAGGAGTTAGGCTGGATGAAACCGTTGCATCTCCTAGTTGCTCTCAGGTTACCTCCGAGTTGGAGGAGTCTGCTCGTAAGATTTCTTCGAGTGGTACCTGTGTTCAAGTGCCAGAGGATTACATGGAGGATCAACAAACATCTCTAAAGTCTGAAATTCAAAATGATATTGCTAACTATACAGGAGAAGCATGCACACCTAACATTGTAGATTGTTTCAACCCTGTTGCTCATGAAAAAATGGCATCTACTCAATTCTGTGTGCTTCAGGCATGCAACTCTGATCCGAGTCATCACAGTGTGGTATCTTCTTCAGATAAAAGTGCAGAAATTCCTTGCAACTTATCTTCTGAGGTTGTGCGGTTAAACTCAGTGGCCAACGTTATATCTGGCGACAATCAACTGGATGTTTTGGATAGGTCTGCCACTTCTGACTCGCTTGCTCCTGAAAAGTTTCTATCTATATCAGAGGGGCTCACTGCTGAACCAAGCGGTATACCAGTTGAGTCTACACCTGAAAAAGAAGTCTTCGGTGGTGATAGTGGTGATGGTGCTAGGTCCAAACTCATCTCTGGGAAGAAACGCAGTTCTACTGAAAGTAGTGTAACAGTTCAGAGTTTAAATTCAGTCGAGTCATTTGGGGAGGCCCGAGGAAAGCGAACTGCAGATTCCATCCCTGATGATGATGATTTATTGTCTTCTATTTTAGTCGGGAGAAGATCTTCAGTTTTAAAACTAAAACCTACTCCGCCTGTACCTGAAATGAAAACCACAAAACGCCTCCGAACTGCTGTCCGTAGCACTGCTTCAAAGAGAAAAGTGCTAATGGATGATTCAATGGTCCTGCATGGCGATACAATACGCCAGCAGTTGACAAATACCGAAGATATACGTCGTGTGCGGAAAAAAGCCCCTTGTACTCGCCCAGAAATTTCAATGATTCAGAGACAAAATTTGGAAGATGAAATTTTCACTGAACCCATCATCACAGGCTTGGCAGCGGAACTGATATTTCTGCACACCGAGAATTTTGATGTGAGTACAACCAGGTTTTCTGAAGATGATCAAGGCAACACTTCTGACAAGGTACTGAAGGATGAACAATATTTTGTGAGGTCAAATGTTACTGAAGAAACTGAAATCCTTGGAAGCACCAAACCTGTAATAGTGAGAGATGATGCAGAAGCACAAGCTGACATTGTTATTGAGACTGAAAACCGGGGGATGCAAGATCATAACCTAAGATCTCAGGACTCTGATGCTCAAGGGCAGAGGATTACCAACCCTGAAGAATCAAAGCATGAACCCTTGGTGGAGATGAGCGAAATGGAAATTGATGTAAACAATGCAGAAGCTACCAATTTTGTTCCAGCAGATACATACGATATGCCATCTGAAGATAACATCCAGCCAAGGCACATGAATAAAATTGATGGGGAAGATGCTTCTCTGCAGACGGGTACATTATGCATGTCCCCAGATGAAAAGGTGGATGGTCAACCTATTGATGTGGATGCGTTGGTAGTCGATGCAAGTATTCAGAAAGGAGTTGACGCTATTGGATTTGCTGAGCATAATGTCGAAATCAGTGCAGATGTTCAGACGGGTTTTTCTGAAGTTACTGACCTAAATGCTACACTTGCAACCGTAACTCTTGAAACTGGTGACCACAAGAACTTGAGTTTAGATGATCAACCTATGGAAGAAATGGGACATGAGCTGCATATTGTGAATGAAAATGAGGTCCTAGATGCAACGTATGGTTGTGATGACAAGGACACTAAGTCTAGTTGTATGCTTGGTGGAGAAGACAACATTGGTTCTACAATTTCGTTGGAACTTGATGTGGACGCAAAATATAATTCCTTCAGTGATAAAGAAAACCTAGAACATGAGGAGGCTGATCCACGCAGTGGAACTGAGGCAAAAGTTACTGCAGACTACCCTGCTGGAAATCGTGGAGATTATGGTGATGTAGTTTTTGGAAACGATACAGAATTTTTGAACGTAGATGATGAAGAGATAGCCGAGGAGGCGGATGATATGCCTTCTGCTGAAGACACTTGTCTTCTTGAAAACAGTGGATGGTCTTCCCGCACCAGGGCTGTTGCCAAGTATCTTCAAACTTTATTTGATCAGGAAGCTGTGCATGGGAAAAAGGTTCTTGGCATGGACAACTTATTAAATGGAAAAACTCGTAAGGAAGCTTCAAGGATGTTCTTTGAAACATTGGTTCTTAAGACGAGGGATTACATCAACGTAGAACAAGCAAAACCATTTGACAACATTAACATAAAGCCTAGAGTAAAGCTCATGAAATCAGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007275 GO:0008150 GO:0008152 GO:0008278 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070601 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

1140

Amino Acids

124.81

Weight (kDa)

4.4

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	986 - 1035	1e-18	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16270
fragaria_vesca	FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010
malus_domestica	MD00G1016700.v1.1
prunus_persica	Prupe.6G366000_v2.0.a1 Prupe.6G366000_v2.0.a1
pyrus_communis	pycom04g22040 pycom10g04620 pycom12g24300
rosa_chinensis	RchiOBHm_Chr3g0447331
rosa_laevigata	RLG00000026010
rosa_multiflora	Rmu_ssc0000473.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425510
rosa_rugosa	Rorug02G0599600.1 Rorug02G0599700.1 Rorug02G0599800.1 Rorug02G0599900
rosa_samantha	Rh3AG000300 Rh3BG000100 Rh3CG000100 Rh3DG000300 Rh5AG542800 Rh5AG542900
rosa_wichuraiana	Rw3G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1096
Acc65I	GGTACC	1 cut(s)	1184
AccB1I	GGYRCC	1 cut(s)	1184
AccB7I	CCANNNNNTGG	1 cut(s)	3002
AccI	GTMKAC	3 cut(s)	701, 1585, 1598
AccIII	TCCGGA	1 cut(s)	581
AclI	AACGTT	1 cut(s)	1470
AclWI	GGATC	4 cut(s)	581, 1227, 1367, 2987
AcoI	YGGCCR	1 cut(s)	1464
AcyI	GRCGYC	1 cut(s)	114
AdeI	CACNNNGTG	2 cut(s)	1390, 3002
AfaI	GTAC	9 cut(s)	412, 648, 807, 1186, 1845, 2008, 2131, 2178, 2551
AfiI	CCNNNNNNNGG	5 cut(s)	887, 1003, 3002, 3189, 3190
AflII	CTTAAG	2 cut(s)	248, 3326
AhdI	GACNNNNNGTC	1 cut(s)	2872
AjnI	CCWGG	6 cut(s)	549, 618, 649, 690, 2135, 3188
AjuI	GAANNNNNNNTTGG	2 cut(s)	2889, 2921
Alw21I	GWGCWC	1 cut(s)	988
Alw26I	GTCTC	5 cut(s)	121, 329, 674, 2029, 2291
Alw44I	GTGCAC	1 cut(s)	984
AlwI	GGATC	4 cut(s)	581, 1227, 1367, 2987
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	1737
Aor13HI	TCCGGA	1 cut(s)	581
AoxI	GGCC	5 cut(s)	34, 547, 753, 1464, 1734
ApaLI	GTGCAC	1 cut(s)	984
ApeKI	GCWGC	4 cut(s)	554, 557, 2087, 2809
Asp700I	GAANNNNTTC	3 cut(s)	378, 1542, 1810
Asp718I	GGTACC	1 cut(s)	1184
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	6 cut(s)	35, 842, 1647, 1735, 1930, 2833
AsuC2I	CCSGG	2 cut(s)	708, 2309
AsuHPI	GGTGA	8 cut(s)	223, 316, 512, 1082, 1637, 1646, 2765, 3071
AvaI	CYCGRG	1 cut(s)	1737
AvaII	GGWCC	4 cut(s)	842, 1647, 1930, 2833
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	1 cut(s)	988
BaeI	ACNNNNGTAYC	2 cut(s)	1176, 1209
BalI	TGGCCA	1 cut(s)	1466
BanI	GGYRCC	1 cut(s)	1184
BanII	GRGCYC	1 cut(s)	1566
BarI	GAAGNNNNNNTAC	6 cut(s)	1159, 1191, 1879, 1911, 3280, 3312
BbsI	GAAGAC	7 cut(s)	786, 1609, 1779, 2904, 3149, 3153, 3171
Bbv12I	GWGCWC	1 cut(s)	988
BbvI	GCAGC	4 cut(s)	541, 569, 2099, 2796
BccI	CCATC	8 cut(s)	491, 1631, 1769, 2078, 2488, 2516, 2576, 3168
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 2660, 2694
BciT130I	CCWGG	6 cut(s)	551, 620, 651, 692, 2137, 3190
BciVI	GTATCC	1 cut(s)	884
BclI	TGATCA	5 cut(s)	397, 763, 2152, 2779, 3223
BcnI	CCSGG	2 cut(s)	708, 2309
BcoDI	GTCTC	5 cut(s)	121, 329, 674, 2029, 2291
BfaI	CTAG	9 cut(s)	204, 521, 735, 1125, 1644, 2837, 2877, 2975, 3390
BfmI	CTRYAG	7 cut(s)	120, 232, 555, 1089, 1752, 2540, 3024
BfrI	CTTAAG	2 cut(s)	248, 3326
BfuAI	ACCTGC	1 cut(s)	1096
BfuI	GTATCC	1 cut(s)	884
BglI	GCCNNNNNGGC	1 cut(s)	3122
BglII	AGATCT	3 cut(s)	904, 1808, 2333
BisI	GCNGC	5 cut(s)	60, 555, 558, 2088, 2810
BlpI	GCTNAGC	1 cut(s)	2658
BlsI	GCNGC	5 cut(s)	61, 556, 559, 2089, 2811
Bme1390I	CCNGG	8 cut(s)	551, 620, 651, 692, 708, 2137, 2309, 3190
Bme18I	GGWCC	4 cut(s)	842, 1647, 1930, 2833
BmeRI	GACNNNNNGTC	1 cut(s)	2872
BmeT110I	CYCGRG	1 cut(s)	1737
BmgT120I	GGNCC	6 cut(s)	35, 842, 1647, 1735, 1930, 2833
BmiI	GGNNCC	2 cut(s)	696, 1186
BmrFI	CCNGG	8 cut(s)	551, 620, 651, 692, 708, 2137, 2309, 3190
BoxI	GACNNNNGTC	1 cut(s)	3153
BpiI	GAAGAC	7 cut(s)	786, 1609, 1779, 2904, 3149, 3153, 3171
BplI	GAGNNNNNCTC	2 cut(s)	3384, 3416
BpmI	CTGGAG	2 cut(s)	929, 936
Bpu1102I	GCTNAGC	1 cut(s)	2658
BpuEI	CTTGAG	3 cut(s)	546, 2337, 2788
BpuMI	CCSGG	2 cut(s)	708, 2309
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	9 cut(s)	618, 784, 1738, 2233, 2308, 2397, 2501, 3117, 3189
BsaWI	WCCGGW	3 cut(s)	159, 581, 808
Bsc4I	CCNNNNNNNGG	5 cut(s)	887, 1003, 3002, 3189, 3190
Bse1I	ACTGG	8 cut(s)	168, 688, 803, 923, 993, 1497, 1589, 2755
Bse21I	CCTNAGG	1 cut(s)	591
Bse3DI	GCAATG	2 cut(s)	447, 766
BseAI	TCCGGA	1 cut(s)	581
BseBI	CCWGG	6 cut(s)	551, 620, 651, 692, 2137, 3190
BseDI	CCNNGG	9 cut(s)	618, 784, 1738, 2233, 2308, 2397, 2501, 3117, 3189
BseLI	CCNNNNNNNGG	5 cut(s)	887, 1003, 3002, 3189, 3190
BseMI	GCAATG	2 cut(s)	447, 766
BseNI	ACTGG	8 cut(s)	168, 688, 803, 923, 993, 1497, 1589, 2755
BseRI	GAGGAG	3 cut(s)	1169, 2999, 3134
BseSI	GKGCMC	1 cut(s)	988
BseXI	GCAGC	4 cut(s)	541, 569, 2099, 2796
BsgI	GTGCAG	4 cut(s)	291, 1434, 2090, 2700
BshFI	GGCC	5 cut(s)	36, 549, 755, 1466, 1736
BshNI	GGYRCC	1 cut(s)	1184
BsiHKAI	GWGCWC	1 cut(s)	988
BsiHKCI	CYCGRG	1 cut(s)	1737
BsiSI	CCGG	5 cut(s)	160, 582, 708, 809, 2308
BslFI	GGGAC	4 cut(s)	58, 988, 2548, 2814
BslI	CCNNNNNNNGG	5 cut(s)	887, 1003, 3002, 3189, 3190
BsmAI	GTCTC	5 cut(s)	121, 329, 674, 2029, 2291
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	4 cut(s)	58, 988, 2548, 2814
BsnI	GGCC	5 cut(s)	36, 549, 755, 1466, 1736
BsoBI	CYCGRG	1 cut(s)	1737
Bsp1286I	GDGCHC	2 cut(s)	988, 1566
Bsp13I	TCCGGA	1 cut(s)	581
Bsp1720I	GCTNAGC	1 cut(s)	2658
Bsp19I	CCATGG	1 cut(s)	784
BspANI	GGCC	5 cut(s)	36, 549, 755, 1466, 1736
BspEI	TCCGGA	1 cut(s)	581
BspHI	TCATGA	2 cut(s)	1321, 3402
BspLI	GGNNCC	2 cut(s)	696, 1186
BspMAI	CTGCAG	6 cut(s)	236, 559, 1093, 1756, 2544, 3028
BspMI	ACCTGC	1 cut(s)	1096
BspPI	GGATC	4 cut(s)	581, 1227, 1367, 2987
BspQI	GCTCTTC	1 cut(s)	714
BspT107I	GGYRCC	1 cut(s)	1184
BspTI	CTTAAG	2 cut(s)	248, 3326
BsrDI	GCAATG	2 cut(s)	447, 766
BsrI	ACTGG	8 cut(s)	168, 688, 803, 923, 993, 1497, 1589, 2755
BssECI	CCNNGG	9 cut(s)	618, 784, 1738, 2233, 2308, 2397, 2501, 3117, 3189
BssNAI	GTATAC	1 cut(s)	1586
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	4 cut(s)	784, 2233, 2397, 2501
Bst1107I	GTATAC	1 cut(s)	1586
Bst2UI	CCWGG	6 cut(s)	551, 620, 651, 692, 2137, 3190
Bst4CI	ACNGT	9 cut(s)	312, 667, 979, 1040, 1114, 1388, 1699, 2737, 3170
Bst6I	CTCTTC	2 cut(s)	714, 3102
BstACI	GRCGYC	1 cut(s)	114
BstAFI	CTTAAG	2 cut(s)	248, 3326
BstC8I	GCNNGC	8 cut(s)	77, 261, 609, 757, 1282, 1363, 1530, 1955
BstDSI	CCRYGG	1 cut(s)	784
BstEII	GGTNACC	2 cut(s)	1138, 2753
BstHHI	GCGC	1 cut(s)	75
BstMAI	GTCTC	5 cut(s)	121, 329, 674, 2029, 2291
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 2729, 3122
BstNI	CCWGG	6 cut(s)	551, 620, 651, 692, 2137, 3190
BstNSI	RCATGY	3 cut(s)	1284, 1365, 2563
BstPAI	GACNNNNGTC	1 cut(s)	3153
BstPI	GGTNACC	2 cut(s)	1138, 2753
BstSCI	CCNGG	8 cut(s)	549, 618, 649, 690, 706, 2135, 2307, 3188
BstSFI	CTRYAG	7 cut(s)	120, 232, 555, 1089, 1752, 2540, 3024
BstSLI	GKGCMC	1 cut(s)	988
BstV1I	GCAGC	4 cut(s)	541, 569, 2099, 2796
BstV2I	GAAGAC	7 cut(s)	786, 1609, 1779, 2904, 3149, 3153, 3171
BstX2I	RGATCY	4 cut(s)	586, 904, 1808, 2333
BstYI	RGATCY	4 cut(s)	586, 904, 1808, 2333
BstZ17I	GTATAC	1 cut(s)	1586
Bsu36I	CCTNAGG	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	884
BsuRI	GGCC	5 cut(s)	36, 549, 755, 1466, 1736
BtgI	CCRYGG	1 cut(s)	784
BtsI	GCAGTG	4 cut(s)	241, 1566, 1890, 3007
BveI	ACCTGC	1 cut(s)	1096
Cac8I	GCNNGC	8 cut(s)	77, 261, 609, 757, 1282, 1363, 1530, 1955
CaiI	CAGNNNCTG	1 cut(s)	665
CciI	TCATGA	2 cut(s)	1321, 3402
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	6 cut(s)	35, 842, 1647, 1735, 1930, 2833
CseI	GACGC	3 cut(s)	103, 2651, 2948
CsiI	ACCWGGT	1 cut(s)	2135
Csp6I	GTAC	9 cut(s)	411, 647, 806, 1185, 1844, 2007, 2130, 2177, 2550
CspCI	CAANNNNNGTGG	4 cut(s)	262, 297, 987, 1022
CviQI	GTAC	9 cut(s)	411, 647, 806, 1185, 1844, 2007, 2130, 2177, 2550
DraI	TTTAAA	2 cut(s)	1710, 1821
DraIII	CACNNNGTG	2 cut(s)	1390, 3002
DriI	GACNNNNNGTC	1 cut(s)	2872
EaeI	YGGCCR	1 cut(s)	1464
Eam1104I	CTCTTC	2 cut(s)	714, 3102
Eam1105I	GACNNNNNGTC	1 cut(s)	2872
EarI	CTCTTC	2 cut(s)	714, 3102
EciI	GGCGGA	3 cut(s)	594, 1827, 3140
Eco130I	CCWWGG	4 cut(s)	784, 2233, 2397, 2501
Eco24I	GRGCYC	1 cut(s)	1566
Eco47I	GGWCC	4 cut(s)	842, 1647, 1930, 2833
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	1737
Eco91I	GGTNACC	2 cut(s)	1138, 2753
EcoO109I	RGGNCCY	1 cut(s)	2833
EcoO65I	GGTNACC	2 cut(s)	1138, 2753
EcoRII	CCWGG	6 cut(s)	549, 618, 649, 690, 2135, 3188
EcoT14I	CCWWGG	4 cut(s)	784, 2233, 2397, 2501
EcoT22I	ATGCAT	1 cut(s)	2561
EcoT38I	GRGCYC	1 cut(s)	1566
ErhI	CCWWGG	4 cut(s)	784, 2233, 2397, 2501
Esp3I	CGTCTC	1 cut(s)	121
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	4 cut(s)	58, 988, 2548, 2814
FauI	CCCGC	1 cut(s)	3191
FbaI	TGATCA	5 cut(s)	397, 763, 2152, 2779, 3223
FblI	GTMKAC	3 cut(s)	701, 1585, 1598
Fnu4HI	GCNGC	5 cut(s)	60, 555, 558, 2088, 2810
FriOI	GRGCYC	1 cut(s)	1566
Fsp4HI	GCNGC	5 cut(s)	60, 555, 558, 2088, 2810
FspBI	CTAG	9 cut(s)	204, 521, 735, 1125, 1644, 2837, 2877, 2975, 3390
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	5 cut(s)	60, 555, 558, 2088, 2810
GsuI	CTGGAG	2 cut(s)	929, 936
HaeIII	GGCC	5 cut(s)	36, 549, 755, 1466, 1736
HapII	CCGG	5 cut(s)	160, 582, 708, 809, 2308
HgaI	GACGC	3 cut(s)	103, 2651, 2948
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	114
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	4 cut(s)	702, 1962, 2588, 2641
HindII	GTYRAC	4 cut(s)	702, 1962, 2588, 2641
HindIII	AAGCTT	3 cut(s)	77, 261, 3294
HpaII	CCGG	5 cut(s)	160, 582, 708, 809, 2308
HphI	GGTGA	8 cut(s)	223, 316, 512, 1082, 1637, 1646, 2765, 3071
Hpy99I	CGWCG	2 cut(s)	703, 1986
HpyAV	CCTTC	4 cut(s)	806, 2176, 2965, 3147
HpyCH4III	ACNGT	9 cut(s)	312, 667, 979, 1040, 1114, 1388, 1699, 2737, 3170
HpyCH4IV	ACGT	6 cut(s)	847, 1470, 1981, 2846, 3096, 3348
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 2729, 3122
HpySE526I	ACGT	6 cut(s)	847, 1470, 1981, 2846, 3096, 3348
Hsp92I	GRCGYC	1 cut(s)	114
HspAI	GCGC	1 cut(s)	73
Kpn2I	TCCGGA	1 cut(s)	581
KpnI	GGTACC	1 cut(s)	1188
Ksp22I	TGATCA	5 cut(s)	397, 763, 2152, 2779, 3223
LguI	GCTCTTC	1 cut(s)	714
LmnI	GCTCC	5 cut(s)	70, 275, 418, 700, 1537
Lsp1109I	GCAGC	4 cut(s)	541, 569, 2099, 2796
MabI	ACCWGGT	1 cut(s)	2135
MaeI	CTAG	9 cut(s)	204, 521, 735, 1125, 1644, 2837, 2877, 2975, 3390
MaeII	ACGT	6 cut(s)	847, 1470, 1981, 2846, 3096, 3348
MaeIII	GTNAC	7 cut(s)	1138, 1693, 2212, 2707, 2737, 2753, 3019
MflI	RGATCY	4 cut(s)	586, 904, 1808, 2333
MhlI	GDGCHC	2 cut(s)	988, 1566
MlsI	TGGCCA	1 cut(s)	1466
MluNI	TGGCCA	1 cut(s)	1466
MlyI	GAGTC	8 cut(s)	595, 697, 1166, 1387, 1517, 1604, 1730, 2336
MmeI	TCCRAC	2 cut(s)	1131, 2904
Mox20I	TGGCCA	1 cut(s)	1466
Mph1103I	ATGCAT	1 cut(s)	2561
MroI	TCCGGA	1 cut(s)	581
MroXI	GAANNNNTTC	3 cut(s)	378, 1542, 1810
MscI	TGGCCA	1 cut(s)	1466
MslI	CAYNNNNRTG	2 cut(s)	961, 1386
Msp20I	TGGCCA	1 cut(s)	1466
MspA1I	CMGCKG	1 cut(s)	2090
MspCI	CTTAAG	2 cut(s)	248, 3326
MspI	CCGG	5 cut(s)	160, 582, 708, 809, 2308
MspR9I	CCNGG	8 cut(s)	551, 620, 651, 692, 708, 2137, 2309, 3190
MvaI	CCWGG	6 cut(s)	551, 620, 651, 692, 2137, 3190
MwoI	GCNNNNNNNGC	3 cut(s)	81, 2729, 3122
NciI	CCSGG	2 cut(s)	708, 2309
NcoI	CCATGG	1 cut(s)	784
NlaIV	GGNNCC	2 cut(s)	696, 1186
NmeAIII	GCCGAG	1 cut(s)	3142
NmuCI	GTSAC	1 cut(s)	2753
NsiI	ATGCAT	1 cut(s)	2561
NspI	RCATGY	3 cut(s)	1284, 1365, 2563
PaeI	GCATGC	2 cut(s)	1284, 1365
PagI	TCATGA	2 cut(s)	1321, 3402
PciSI	GCTCTTC	1 cut(s)	714
PdmI	GAANNNNTTC	3 cut(s)	378, 1542, 1810
PfeI	GAWTC	7 cut(s)	88, 125, 299, 1757, 1922, 2029, 2381
PflMI	CCANNNNNTGG	1 cut(s)	3002
PfoI	TCCNGGA	1 cut(s)	706
PkrI	GCNGC	5 cut(s)	61, 556, 559, 2089, 2811
PleI	GAGTC	8 cut(s)	595, 697, 1165, 1386, 1517, 1603, 1729, 2336
PpsI	GAGTC	8 cut(s)	595, 697, 1165, 1386, 1517, 1603, 1729, 2336
PpuMI	RGGWCCY	1 cut(s)	2833
PshAI	GACNNNNGTC	1 cut(s)	3153
Psp1406I	AACGTT	1 cut(s)	1470
Psp5II	RGGWCCY	1 cut(s)	2833
Psp6I	CCWGG	6 cut(s)	549, 618, 649, 690, 2135, 3188
PspEI	GGTNACC	2 cut(s)	1138, 2753
PspGI	CCWGG	6 cut(s)	549, 618, 649, 690, 2135, 3188
PspN4I	GGNNCC	2 cut(s)	696, 1186
PspPI	GGNCC	6 cut(s)	35, 842, 1647, 1735, 1930, 2833
PspPPI	RGGWCCY	1 cut(s)	2833
PstI	CTGCAG	6 cut(s)	236, 559, 1093, 1756, 2544, 3028
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	4 cut(s)	586, 904, 1808, 2333
RsaI	GTAC	9 cut(s)	412, 648, 807, 1186, 1845, 2008, 2131, 2178, 2551
RsaNI	GTAC	9 cut(s)	411, 647, 806, 1185, 1844, 2007, 2130, 2177, 2550
RseI	CAYNNNNRTG	2 cut(s)	961, 1386
SalI	GTCGAC	1 cut(s)	700
SapI	GCTCTTC	1 cut(s)	714
SatI	GCNGC	5 cut(s)	60, 555, 558, 2088, 2810
Sau96I	GGNCC	6 cut(s)	35, 842, 1647, 1735, 1930, 2833
SbfI	CCTGCAGG	1 cut(s)	1093
SchI	GAGTC	8 cut(s)	595, 697, 1166, 1387, 1517, 1604, 1730, 2336
ScrFI	CCNGG	8 cut(s)	551, 620, 651, 692, 708, 2137, 2309, 3190
SdaI	CCTGCAGG	1 cut(s)	1093
SduI	GDGCHC	2 cut(s)	988, 1566
SexAI	ACCWGGT	1 cut(s)	2135
SfcI	CTRYAG	7 cut(s)	120, 232, 555, 1089, 1752, 2540, 3024
SinI	GGWCC	4 cut(s)	842, 1647, 1930, 2833
SmiMI	CAYNNNNRTG	2 cut(s)	961, 1386
SmlI	CTYRAG	5 cut(s)	248, 561, 2352, 2767, 3326
SmoI	CTYRAG	5 cut(s)	248, 561, 2352, 2767, 3326
SphI	GCATGC	2 cut(s)	1284, 1365
Sse8387I	CCTGCAGG	1 cut(s)	1093
SspI	AATATT	1 cut(s)	2195
SspMI	CTAG	9 cut(s)	204, 521, 735, 1125, 1644, 2837, 2877, 2975, 3390
StyD4I	CCNGG	8 cut(s)	549, 618, 649, 690, 706, 2135, 2307, 3188
StyI	CCWWGG	4 cut(s)	784, 2233, 2397, 2501
TaaI	ACNGT	9 cut(s)	312, 667, 979, 1040, 1114, 1388, 1699, 2737, 3170
TaiI	ACGT	6 cut(s)	850, 1473, 1984, 2849, 3099, 3351
TaqI	TCGA	6 cut(s)	461, 701, 1178, 1719, 2616, 2670
TatI	WGTACW	3 cut(s)	410, 2006, 2129
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	7 cut(s)	88, 125, 299, 1757, 1922, 2029, 2381
TseFI	GTSAC	1 cut(s)	2753
TseI	GCWGC	4 cut(s)	554, 557, 2087, 2809
Tsp45I	GTSAC	1 cut(s)	2753
TspGWI	ACGGA	2 cut(s)	687, 1874
Van91I	CCANNNNNTGG	1 cut(s)	3002
Vha464I	CTTAAG	2 cut(s)	248, 3326
VneI	GTGCAC	1 cut(s)	984
VpaK11BI	GGWCC	4 cut(s)	842, 1647, 1930, 2833
XbaI	TCTAGA	2 cut(s)	203, 520
XceI	RCATGY	3 cut(s)	1284, 1365, 2563
XmiI	GTMKAC	3 cut(s)	701, 1585, 1598
XmnI	GAANNNNTTC	3 cut(s)	378, 1542, 1810
XspI	CTAG	9 cut(s)	204, 521, 735, 1125, 1644, 2837, 2877, 2975, 3390
Zsp2I	ATGCAT	1 cut(s)	2561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.