AT5G16290

Acetolactate synthase small subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
5333750 .. 5337784
4035 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16290.1

Sequence Viewer

Length: 1434 bp
ATGGCGGCGACGACGACTGCTACTTCATTATTCTCATCTCGTCTTCACTTCCAGAATCAGAATCAAGGTTATGGGTTTCCGGCGAAAACCCCCAACTCCCTGCAAGTAAATCAGATCATCGACGGGAGGAAGATGAGGAATGCCACTGTTCTCTCAGCTGCTTCCACTGATAAAGCCATCACCACTGCTCAATCTGTAGCTCCGACGGCTTGTGATAGAGTAAGGAGGCATACAATCTCGGTGTTTGTGGGCGATGAGAGCGGTATAATAAATAGAATTGCTGGAGTATTTGCTAGAAGGGGATACAATATTGAGTCCCTTGCCGTAGGATTGAATGAAGACAAGGCTCTGTTTACTATAGTTGTTCTTGGAACAGATAAAGTCTTGCAGCAAGTTGTAGAACAGCTTAACAAGCTCGTCAATGTCATCAAGGTGGAAGATCTCTCCAAGGAGCCCCATGTAGAACGTGAGTTAATGCTCATTAAACTTAACGCTGATCCAAGCACCCGCTCAGAGATCATGTGGTTGGTGGATATCTTTAGAGCAAAAATCGTGGATACCTCAGAGCAATCTCTAACGATTGAGGTAACTGGAGACCCTGGAAAAATGGTTGCACTAACGACAAACTTAGAGAAGTTTGGAATAAAAGAAATTGCGAGAACAGGGAAGATTGCTCTGAGACGGGAAAAGATGGGAGAAACCGCTCCGTTTTGGAGATTTTCAGCGGCATCATATCCACATCTTGTAAAGGAATCATCTCATGAGACTGTTGCAGAGAAAACAAAACTAGCATTGACTGGAAATGGCAATGCATCATCCGGGGGTGACGTTTATCCAGTGGAACCCTATAACGATTTCAAACCGGTCCTTGACGCTCATTGGGGAATGGTCTACGATGAAGATTCGAGCGGACTTCGGTCCCACACATTATCTTTACTTGTGGCCAACGTTCCCGGAGTTCTCAATCTAATAACTGGAGCTATCTCTAGAAGAGGTTATAACATCCAGAGTCTAGCTGTTGGTCCTGCTGAGAAAGAGGGCTTATCTCGGATTACAACAGTTATTCCCGGAACTGATGAAAATATAGATAAATTGGTTAGGCAGCTCCAGAAGTTGATTGATCTTCAGGAGATCCAAAATATAACGCACATGCCATTTGCGGAGCGAGAACTGATGCTCATCAAAGTAGCTGCTGATACTTCTGCAAGGAGAGATGTTTTAGATATTGCTCAAGTTTTCCGTGCTAAAGCCATTGATGTCTCTGATCATACTATCACCCTTGAGGTTACAGGGGATCTCAGAAAAATGTCTGCATTACAAACGCAGTTAGAGGCCTATGGAATCTGCGAGGTGGCTCGGACAGGAAGAGTGGCATTGGTAAGAGAATCTGGAGTGGATTCGACTTATCTTCGTGGATACTCTCTTCCTTTGTAG

Protein Analysis

477

Amino Acids

52.33

Weight (kDa)

6.78

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACT PF01842 77 - 140 3e-11 ACT domain
ACT_AHAS_ss PF22629 79 - 144 5e-17 AHAS small subunit-like ACT domain
ACT_5 PF13710 87 - 145 3.1e-08 ACT domain
ALS_ss_C PF10369 156 - 229 3.3e-29 Small subunit of acetolactate synthase
ACT PF01842 308 - 373 8.3e-11 ACT domain
ACT_AHAS_ss PF22629 310 - 374 1.8e-21 AHAS small subunit-like ACT domain
ACT_5 PF13710 317 - 377 4.3e-08 ACT domain
ALS_ss_C PF10369 389 - 461 2.5e-26 Small subunit of acetolactate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AccBSI CCGCTC 4 cut(s) 261, 510, 704, 909
AccI GTMKAC 1 cut(s) 891
AciI CCGC 7 cut(s) 5, 261, 508, 702, 725, 909, 1160
AclI AACGTT 1 cut(s) 948
AclWI GGATC 3 cut(s) 491, 1126, 1302
AcoI YGGCCR 1 cut(s) 942
AcuI CTGAAG 1 cut(s) 1109
AgeI ACCGGT 1 cut(s) 862
AgsI TTSAA 2 cut(s) 334, 859
AjnI CCWGG 1 cut(s) 598
AluBI AGCT 8 cut(s) 158, 200, 406, 415, 980, 1016, 1105, 1190
AluI AGCT 8 cut(s) 158, 200, 406, 415, 980, 1016, 1105, 1190
Alw26I GTCTC 4 cut(s) 588, 673, 758, 1264
AlwI GGATC 3 cut(s) 491, 1126, 1302
AoxI GGCC 2 cut(s) 942, 1332
ApeKI GCWGC 4 cut(s) 158, 388, 1102, 1190
AsiGI ACCGGT 1 cut(s) 862
AspS9I GGNCC 3 cut(s) 865, 918, 1022
AsuC2I CCSGG 3 cut(s) 820, 954, 1068
AsuHPI GGTGA 3 cut(s) 172, 836, 1267
AvaII GGWCC 3 cut(s) 865, 918, 1022
BalI TGGCCA 1 cut(s) 944
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 35, 345
BbvI GCAGC 4 cut(s) 145, 400, 1114, 1177
BccI CCATC 2 cut(s) 185, 685
BceAI ACGGC 2 cut(s) 222, 308
BciT130I CCWGG 1 cut(s) 600
BciVI GTATCC 3 cut(s) 296, 550, 1409
BclI TGATCA 1 cut(s) 1264
BcnI CCSGG 3 cut(s) 820, 954, 1068
BcoDI GTCTC 4 cut(s) 588, 673, 758, 1264
BfaI CTAG 4 cut(s) 294, 788, 987, 1013
BfmI CTRYAG 2 cut(s) 195, 357
BfuI GTATCC 3 cut(s) 296, 550, 1409
BglII AGATCT 1 cut(s) 439
BisI GCNGC 6 cut(s) 6, 159, 389, 726, 1103, 1191
BlsI GCNGC 6 cut(s) 7, 160, 390, 727, 1104, 1192
Bme1390I CCNGG 4 cut(s) 600, 820, 954, 1068
Bme18I GGWCC 3 cut(s) 865, 918, 1022
BmgT120I GGNCC 3 cut(s) 865, 918, 1022
BmiI GGNNCC 3 cut(s) 453, 843, 920
BmrFI CCNGG 4 cut(s) 600, 820, 954, 1068
BmsI GCATC 3 cut(s) 737, 821, 1164
BoxI GACNNNNGTC 1 cut(s) 916
BpiI GAAGAC 2 cut(s) 35, 345
BpmI CTGGAG 5 cut(s) 303, 612, 996, 1091, 1410
BpuEI CTTGAG 2 cut(s) 1215, 1301
BpuMI CCSGG 3 cut(s) 820, 954, 1068
BsaBI GATNNNNATC 1 cut(s) 1178
BsaI GGTCTC 1 cut(s) 588
BsaJI CCNNGG 3 cut(s) 447, 598, 819
BsaWI WCCGGW 1 cut(s) 862
Bse118I RCCGGY 1 cut(s) 862
Bse1I ACTGG 4 cut(s) 595, 802, 836, 979
Bse3DI GCAATG 1 cut(s) 814
Bse8I GATNNNNATC 1 cut(s) 1178
BseBI CCWGG 1 cut(s) 600
BseDI CCNNGG 3 cut(s) 447, 598, 819
BseGI GGATG 2 cut(s) 815, 1002
BseJI GATNNNNATC 1 cut(s) 1178
BseMI GCAATG 1 cut(s) 814
BseMII CTCAG 6 cut(s) 168, 525, 576, 668, 1020, 1312
BseNI ACTGG 4 cut(s) 595, 802, 836, 979
BseXI GCAGC 4 cut(s) 145, 400, 1114, 1177
BshFI GGCC 2 cut(s) 944, 1334
BshTI ACCGGT 1 cut(s) 862
BsiSI CCGG 5 cut(s) 80, 819, 863, 954, 1068
BslFI GGGAC 2 cut(s) 301, 904
BsmAI GTCTC 4 cut(s) 588, 673, 758, 1264
BsmBI CGTCTC 1 cut(s) 673
BsmFI GGGAC 2 cut(s) 301, 904
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 2 cut(s) 944, 1334
Bso31I GGTCTC 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 8 cut(s) 114, 439, 496, 516, 1120, 1131, 1264, 1294
BspACI CCGC 7 cut(s) 5, 261, 508, 702, 725, 909, 1160
BspANI GGCC 2 cut(s) 944, 1334
BspCNI CTCAG 6 cut(s) 167, 524, 575, 669, 1021, 1311
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 3 cut(s) 453, 843, 920
BspPI GGATC 3 cut(s) 491, 1126, 1302
BspTNI GGTCTC 1 cut(s) 588
BsrBI CCGCTC 4 cut(s) 261, 510, 704, 909
BsrDI GCAATG 1 cut(s) 814
BsrFI RCCGGY 1 cut(s) 862
BsrI ACTGG 4 cut(s) 595, 802, 836, 979
BssAI RCCGGY 1 cut(s) 862
BssECI CCNNGG 3 cut(s) 447, 598, 819
BssMI GATC 8 cut(s) 114, 439, 496, 516, 1120, 1131, 1264, 1294
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 3 cut(s) 148, 769, 1060
Bst6I CTCTTC 3 cut(s) 985, 1360, 1428
BstDEI CTNAG 7 cut(s) 154, 511, 562, 628, 677, 1029, 1298
BstF5I GGATG 2 cut(s) 815, 1002
BstKTI GATC 8 cut(s) 117, 442, 499, 519, 1123, 1134, 1267, 1297
BstMAI GTCTC 4 cut(s) 588, 673, 758, 1264
BstMBI GATC 8 cut(s) 114, 439, 496, 516, 1120, 1131, 1264, 1294
BstMWI GCNNNNNNNGC 3 cut(s) 206, 258, 412
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 1 cut(s) 1153
BstPAI GACNNNNGTC 1 cut(s) 916
BstSCI CCNGG 4 cut(s) 598, 818, 952, 1066
BstSFI CTRYAG 2 cut(s) 195, 357
BstV1I GCAGC 4 cut(s) 145, 400, 1114, 1177
BstV2I GAAGAC 2 cut(s) 35, 345
BstX2I RGATCY 3 cut(s) 439, 1131, 1294
BstYI RGATCY 3 cut(s) 439, 1131, 1294
BsuI GTATCC 3 cut(s) 296, 550, 1409
BsuRI GGCC 2 cut(s) 944, 1334
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 815, 1002
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 4 cut(s) 144, 165, 183, 843
CciI TCATGA 1 cut(s) 760
Cfr10I RCCGGY 1 cut(s) 862
Cfr13I GGNCC 3 cut(s) 865, 918, 1022
CseI GACGC 1 cut(s) 881
CspAI ACCGGT 1 cut(s) 862
CspCI CAANNNNNGTGG 2 cut(s) 534, 569
CviAII CATG 4 cut(s) 458, 520, 761, 1150
DdeI CTNAG 7 cut(s) 154, 511, 562, 628, 677, 1029, 1298
DpnI GATC 8 cut(s) 116, 441, 498, 518, 1122, 1133, 1266, 1296
DpnII GATC 8 cut(s) 114, 439, 496, 516, 1120, 1131, 1264, 1294
EaeI YGGCCR 1 cut(s) 942
Eam1104I CTCTTC 3 cut(s) 985, 1360, 1428
EarI CTCTTC 3 cut(s) 985, 1360, 1428
Eco130I CCWWGG 1 cut(s) 447
Eco147I AGGCCT 1 cut(s) 1334
Eco24I GRGCYC 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 588
Eco32I GATATC 1 cut(s) 535
Eco47I GGWCC 3 cut(s) 865, 918, 1022
Eco57I CTGAAG 1 cut(s) 1109
EcoRII CCWGG 1 cut(s) 598
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 447
EcoT22I ATGCAT 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 447
Esp3I CGTCTC 1 cut(s) 673
FaeI CATG 4 cut(s) 461, 523, 764, 1153
FaqI GGGAC 2 cut(s) 301, 904
FatI CATG 4 cut(s) 457, 519, 760, 1149
FauI CCCGC 1 cut(s) 515
FbaI TGATCA 1 cut(s) 1264
FblI GTMKAC 1 cut(s) 891
Fnu4HI GCNGC 6 cut(s) 6, 159, 389, 726, 1103, 1191
FokI GGATG 2 cut(s) 802, 989
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 6 cut(s) 6, 159, 389, 726, 1103, 1191
FspBI CTAG 4 cut(s) 294, 788, 987, 1013
GluI GCNGC 6 cut(s) 6, 159, 389, 726, 1103, 1191
GsuI CTGGAG 5 cut(s) 303, 612, 996, 1091, 1410
HaeIII GGCC 2 cut(s) 944, 1334
HapII CCGG 5 cut(s) 80, 819, 863, 954, 1068
HgaI GACGC 1 cut(s) 881
Hin1II CATG 4 cut(s) 461, 523, 764, 1153
HinfI GANTC 9 cut(s) 55, 61, 314, 752, 902, 1009, 1341, 1385, 1397
HpaII CCGG 5 cut(s) 80, 819, 863, 954, 1068
HphI GGTGA 3 cut(s) 172, 836, 1267
Hpy166II GTNNAC 2 cut(s) 354, 892
Hpy188III TCNNGA 7 cut(s) 52, 761, 987, 1006, 1108, 1127, 1389
Hpy8I GTNNAC 2 cut(s) 354, 892
Hpy99I CGWCG 4 cut(s) 13, 16, 125, 208
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 3 cut(s) 148, 769, 1060
HpyCH4IV ACGT 3 cut(s) 466, 828, 948
HpyCH4V TGCA 7 cut(s) 103, 388, 614, 773, 812, 1205, 1313
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 258, 412
HpyF3I CTNAG 7 cut(s) 154, 511, 562, 628, 677, 1029, 1298
HpySE526I ACGT 3 cut(s) 466, 828, 948
Hsp92II CATG 4 cut(s) 461, 523, 764, 1153
Ksp22I TGATCA 1 cut(s) 1264
Kzo9I GATC 8 cut(s) 114, 439, 496, 516, 1120, 1131, 1264, 1294
LmnI GCTCC 6 cut(s) 205, 451, 709, 977, 1110, 1162
Lsp1109I GCAGC 4 cut(s) 145, 400, 1114, 1177
LweI GCATC 3 cut(s) 737, 821, 1164
MaeI CTAG 4 cut(s) 294, 788, 987, 1013
MaeII ACGT 3 cut(s) 466, 828, 948
MaeIII GTNAC 3 cut(s) 586, 824, 1285
MalI GATC 8 cut(s) 116, 441, 498, 518, 1122, 1133, 1266, 1296
MbiI CCGCTC 4 cut(s) 261, 510, 704, 909
MboI GATC 8 cut(s) 114, 439, 496, 516, 1120, 1131, 1264, 1294
MflI RGATCY 3 cut(s) 439, 1131, 1294
MhlI GDGCHC 1 cut(s) 456
MlsI TGGCCA 1 cut(s) 944
MluCI AATT 3 cut(s) 276, 651, 1091
MluNI TGGCCA 1 cut(s) 944
MlyI GAGTC 2 cut(s) 323, 1018
MmeI TCCRAC 1 cut(s) 227
Mox20I TGGCCA 1 cut(s) 944
Mph1103I ATGCAT 1 cut(s) 814
MscI TGGCCA 1 cut(s) 944
MseI TTAA 4 cut(s) 408, 473, 483, 489
MslI CAYNNNNRTG 1 cut(s) 431
Msp20I TGGCCA 1 cut(s) 944
MspA1I CMGCKG 2 cut(s) 158, 725
MspI CCGG 5 cut(s) 80, 819, 863, 954, 1068
MspR9I CCNGG 4 cut(s) 600, 820, 954, 1068
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 3 cut(s) 206, 258, 412
NciI CCSGG 3 cut(s) 820, 954, 1068
NdeII GATC 8 cut(s) 114, 439, 496, 516, 1120, 1131, 1264, 1294
NlaIII CATG 4 cut(s) 461, 523, 764, 1153
NlaIV GGNNCC 3 cut(s) 453, 843, 920
NmuCI GTSAC 1 cut(s) 824
NsiI ATGCAT 1 cut(s) 814
NspI RCATGY 1 cut(s) 1153
PagI TCATGA 1 cut(s) 760
PceI AGGCCT 1 cut(s) 1334
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 7 cut(s) 55, 61, 752, 902, 1341, 1385, 1397
PfoI TCCNGGA 2 cut(s) 952, 1066
PinAI ACCGGT 1 cut(s) 862
PkrI GCNGC 6 cut(s) 7, 160, 390, 727, 1104, 1192
PleI GAGTC 2 cut(s) 322, 1017
PpsI GAGTC 2 cut(s) 322, 1017
PshAI GACNNNNGTC 1 cut(s) 916
PsiI TTATAA 1 cut(s) 999
Psp1406I AACGTT 1 cut(s) 948
Psp6I CCWGG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 3 cut(s) 453, 843, 920
PspPI GGNCC 3 cut(s) 865, 918, 1022
PsuI RGATCY 3 cut(s) 439, 1131, 1294
PvuII CAGCTG 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 431
SaqAI TTAA 4 cut(s) 408, 473, 483, 489
SatI GCNGC 6 cut(s) 6, 159, 389, 726, 1103, 1191
Sau3AI GATC 8 cut(s) 114, 439, 496, 516, 1120, 1131, 1264, 1294
Sau96I GGNCC 3 cut(s) 865, 918, 1022
SchI GAGTC 2 cut(s) 323, 1018
ScrFI CCNGG 4 cut(s) 600, 820, 954, 1068
SduI GDGCHC 1 cut(s) 456
SfaNI GCATC 3 cut(s) 737, 821, 1164
SfcI CTRYAG 2 cut(s) 195, 357
SinI GGWCC 3 cut(s) 865, 918, 1022
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 2 cut(s) 1230, 1280
SmoI CTYRAG 2 cut(s) 1230, 1280
Sse9I AATT 3 cut(s) 276, 651, 1091
SseBI AGGCCT 1 cut(s) 1334
SsiI CCGC 7 cut(s) 5, 261, 508, 702, 725, 909, 1160
SspI AATATT 1 cut(s) 310
SspMI CTAG 4 cut(s) 294, 788, 987, 1013
StuI AGGCCT 1 cut(s) 1334
StyD4I CCNGG 4 cut(s) 598, 818, 952, 1066
StyI CCWWGG 1 cut(s) 447
TaaI ACNGT 3 cut(s) 148, 769, 1060
TaiI ACGT 3 cut(s) 469, 831, 951
TaqI TCGA 3 cut(s) 120, 905, 1400
TaqII GACCGA 1 cut(s) 906
TasI AATT 3 cut(s) 276, 651, 1091
TauI GCSGC 2 cut(s) 8, 728
TfiI GAWTC 7 cut(s) 55, 61, 752, 902, 1341, 1385, 1397
Tru1I TTAA 4 cut(s) 408, 473, 483, 489
Tru9I TTAA 4 cut(s) 408, 473, 483, 489
TscAI CASTG 4 cut(s) 151, 172, 190, 843
TseFI GTSAC 1 cut(s) 824
TseI GCWGC 4 cut(s) 158, 388, 1102, 1190
Tsp45I GTSAC 1 cut(s) 824
TspDTI ATGAA 4 cut(s) 15, 351, 912, 1092
TspGWI ACGGA 2 cut(s) 696, 1229
TspRI CASTG 4 cut(s) 151, 172, 190, 843
VpaK11BI GGWCC 3 cut(s) 865, 918, 1022
XbaI TCTAGA 1 cut(s) 986
XceI RCATGY 1 cut(s) 1153
XmiI GTMKAC 1 cut(s) 891
XspI CTAG 4 cut(s) 294, 788, 987, 1013
Zsp2I ATGCAT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.