Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000357.1

Orthogroup ID

OG0008290

Physical Location & Seq

Genomic Coordinates Forward (+)

72327 .. 77631

Gene Structure 5305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000357.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

atggcggcttctttgtcatcaccaccaccgtgctcaactccactgattacccagaaaccatgtttcagactcgatttgggacgtgggttcttgaaaagtttcgaccttggccgtcagaggccaccaaagttgaggtctttggagtcgtctaaggagctggtggtctctgctagcagcaacaatgctgtgtctgtcactgaccctgcgccttcattgactcgctctaaggtgaaacgccatacgatttcagtgttcgttggtgatgagagtggaattataaaccgaatagcaggggtgtttgccaggaggggttacaatattgagtcccttgctgttggcttgaacaaggacagggctctctttaccatagttgtctcaggcactgaaaatgttttgcggcaagttgttgaacagctcaacaagttggtgaatgtgataaaggttgaagatatctcaagggagccacaagtagaacgtgaattgatgcttatcaaacttaatgcagatccaagcaaccgtgcagagatcatatggttagtggacatcttcagagcgaaaattgtggacatctctgaacattcactgacaattgaggttactggtgaccctggcaaaatggttgctgttcaaagaaacttgagcaaatttggaatcaaagaacttgcaagaactggaaagattgctctgagacgagaaaagatgggtgagacagctcctttttggagattttctgcagcttcttatcctgatcttgaaaggacaatgtctgatgatgaagttgcagtgaaaccaaatcattcagccaatggtgctgctagtattgcctcacagggtgatgtttatcctgtggagccttatgatgactttccttcaaatcaagtactagatgctcattggggtgttctctatgatgaagattcaagtggggttcaatcacacactttgtgtatgcttgtgaatgatgtacctggagtcctgaacatagttacaggagtcatatctcgaagaggttataacattcagagtctagctgtggggccttctgagaaggaagggctttctcgcattacaactgttgttcctggtactgatgactcaattaccaagctggtccagcaacttcgcaagttaatagatcttcatgaggttcgggatattacacacttaccatttgctgagcgagagttgatgttaataaagattgctgtaaacgctactgctagaagggatgttctcgatattgctggcattttccgtgctaaagccgttgatgtttctgatcacacaattactcttgagcttactggcgatttgaataaaatggttgcactgcagaagttactagagccctatgggctttgcgaggttgcacggactgggagagtggcattggagcggggctctggcgtggattccacttctctccgtggatatccccttccattataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ACT ACT_5 ALS_ss_C

Protein Analysis

482

Amino Acids

52.83

Weight (kDa)

7.1

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16290 AT5G16290
fragaria_vesca	FvH4_3g07270 FvH4_3g07270 FvH4_3g07270
malus_domestica	MD00G1009000.v1.1 MD10G1275300.v1.1
prunus_persica	Prupe.4G067100_v2.0.a1 Prupe.4G067100_v2.0.a1 Prupe.4G067100_v2.0.a1
pyrus_communis	pycom05g27400 pycom10g23000
rosa_chinensis	RchiOBHm_Chr5g0011751
rosa_laevigata	RLG00000031859
rosa_multiflora	Rmu_ssc0000357.1_g000019
rosa_roxburghii	Rroxscaffold_1G00064800
rosa_rugosa	Rorug04G0458600 Rorug04G0458600
rosa_samantha	Rh5AG090400 Rh5BG085900 Rh5CG099700 Rh5DG086100
rosa_wichuraiana	Rw5G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	278, 1014, 1447
AccBSI	CCGCTC	1 cut(s)	1396
AciI	CCGC	3 cut(s)	5, 397, 1396
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	1 cut(s)	532
AdeI	CACNNNGTG	2 cut(s)	833, 945
AfaI	GTAC	3 cut(s)	882, 966, 1087
AjiI	CACGTC	1 cut(s)	83
AjnI	CCWGG	4 cut(s)	302, 607, 967, 1081
AleI	CACNNNNGTG	1 cut(s)	28
AluBI	AGCT	7 cut(s)	157, 415, 713, 737, 1031, 1108, 1300
AluI	AGCT	7 cut(s)	157, 415, 713, 737, 1031, 1108, 1300
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	4 cut(s)	169, 379, 682, 701
AlwI	GGATC	1 cut(s)	500
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	3 cut(s)	109, 119, 1037
ApeKI	GCWGC	3 cut(s)	174, 734, 812
ApoI	RAATTY	1 cut(s)	644
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	208
AspS9I	GGNCC	2 cut(s)	1037, 1111
AsuHPI	GGTGA	7 cut(s)	12, 241, 272, 439, 614, 716, 845
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	1111
BanII	GRGCYC	3 cut(s)	358, 1350, 1403
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	186, 746, 799
BccI	CCATC	1 cut(s)	694
BceAI	ACGGC	2 cut(s)	96, 1250
BciT130I	CCWGG	4 cut(s)	304, 609, 969, 1083
BclI	TGATCA	1 cut(s)	1279
BcoDI	GTCTC	4 cut(s)	169, 379, 682, 701
BfaI	CTAG	6 cut(s)	171, 816, 884, 1028, 1221, 1343
BfmI	CTRYAG	2 cut(s)	732, 1331
BglI	GCCNNNNNGGC	1 cut(s)	1354
BglII	AGATCT	1 cut(s)	1135
BisI	GCNGC	5 cut(s)	6, 175, 398, 735, 813
BlpI	GCTNAGC	1 cut(s)	1176
BlsI	GCNGC	5 cut(s)	7, 176, 399, 736, 814
BmcAI	AGTACT	1 cut(s)	882
Bme1390I	CCNGG	4 cut(s)	304, 609, 969, 1083
Bme18I	GGWCC	1 cut(s)	1111
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	1037, 1111
BmiI	GGNNCC	3 cut(s)	462, 852, 1038
BmrFI	CCNGG	4 cut(s)	304, 609, 969, 1083
BmrI	ACTGGG	1 cut(s)	1386
BmsI	GCATC	2 cut(s)	474, 877
BmtI	GCTAGC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	1386
BplI	GAGNNNNNCTC	2 cut(s)	1385, 1417
BpmI	CTGGAG	1 cut(s)	990
Bpu1102I	GCTNAGC	1 cut(s)	1176
BpuEI	CTTGAG	3 cut(s)	439, 658, 1316
BsaBI	GATNNNNATC	2 cut(s)	488, 840
BsaI	GGTCTC	1 cut(s)	169
BsaJI	CCNNGG	3 cut(s)	106, 607, 1426
Bse1I	ACTGG	4 cut(s)	604, 676, 1309, 1381
Bse8I	GATNNNNATC	2 cut(s)	488, 840
BseBI	CCWGG	4 cut(s)	304, 609, 969, 1083
BseDI	CCNNGG	3 cut(s)	106, 607, 1426
BseGI	GGATG	1 cut(s)	1234
BseJI	GATNNNNATC	2 cut(s)	488, 840
BseMII	CTCAG	4 cut(s)	390, 677, 1035, 1167
BseNI	ACTGG	4 cut(s)	604, 676, 1309, 1381
BseXI	GCAGC	3 cut(s)	186, 746, 799
BsgI	GTGCAG	1 cut(s)	540
BshFI	GGCC	3 cut(s)	111, 121, 1039
BsiHKAI	GWGCWC	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	93, 310
BsmAI	GTCTC	4 cut(s)	169, 379, 682, 701
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	2 cut(s)	93, 310
BsnI	GGCC	3 cut(s)	111, 121, 1039
Bso31I	GGTCTC	1 cut(s)	169
Bsp1286I	GDGCHC	4 cut(s)	35, 358, 1350, 1403
Bsp143I	GATC	5 cut(s)	505, 525, 748, 1135, 1279
Bsp1720I	GCTNAGC	1 cut(s)	1176
BspACI	CCGC	3 cut(s)	5, 397, 1396
BspANI	GGCC	3 cut(s)	111, 121, 1039
BspCNI	CTCAG	4 cut(s)	389, 678, 1036, 1168
BspHI	TCATGA	1 cut(s)	1141
BspLI	GGNNCC	3 cut(s)	462, 852, 1038
BspMAI	CTGCAG	2 cut(s)	736, 1335
BspOI	GCTAGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	500
BspTNI	GGTCTC	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	1396
BsrI	ACTGG	4 cut(s)	604, 676, 1309, 1381
BssECI	CCNNGG	3 cut(s)	106, 607, 1426
BssMI	GATC	5 cut(s)	505, 525, 748, 1135, 1279
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	4 cut(s)	304, 609, 969, 1083
Bst4CI	ACNGT	3 cut(s)	30, 518, 1075
Bst6I	CTCTTC	1 cut(s)	1000
BstC8I	GCNNGC	2 cut(s)	172, 1246
BstDEI	CTNAG	6 cut(s)	150, 225, 376, 686, 1044, 1176
BstDSI	CCRYGG	1 cut(s)	1426
BstEII	GGTNACC	1 cut(s)	602
BstF5I	GGATG	1 cut(s)	1234
BstHHI	GCGC	1 cut(s)	208
BstKTI	GATC	5 cut(s)	508, 528, 751, 1138, 1282
BstMAI	GTCTC	4 cut(s)	169, 379, 682, 701
BstMBI	GATC	5 cut(s)	505, 525, 748, 1135, 1279
BstMWI	GCNNNNNNNGC	5 cut(s)	809, 821, 1114, 1211, 1354
BstNI	CCWGG	4 cut(s)	304, 609, 969, 1083
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	4 cut(s)	302, 607, 967, 1081
BstSFI	CTRYAG	2 cut(s)	732, 1331
BstV1I	GCAGC	3 cut(s)	186, 746, 799
BstX2I	RGATCY	2 cut(s)	505, 1135
BstYI	RGATCY	2 cut(s)	505, 1135
BsuRI	GGCC	3 cut(s)	111, 121, 1039
BtgI	CCRYGG	1 cut(s)	1426
BtrI	CACGTC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	1234
BtsI	GCAGTG	2 cut(s)	789, 1328
BtsIMutI	CAGTG	7 cut(s)	41, 195, 255, 381, 581, 789, 1328
Cac8I	GCNNGC	2 cut(s)	172, 1246
CaiI	CAGNNNCTG	1 cut(s)	383
CciI	TCATGA	1 cut(s)	1141
CfoI	GCGC	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	1037, 1111
Csp6I	GTAC	3 cut(s)	881, 965, 1086
CspCI	CAANNNNNGTGG	2 cut(s)	111, 146
CviAII	CATG	2 cut(s)	60, 1142
CviQI	GTAC	3 cut(s)	881, 965, 1086
DdeI	CTNAG	6 cut(s)	150, 225, 376, 686, 1044, 1176
DpnI	GATC	5 cut(s)	507, 527, 750, 1137, 1281
DpnII	GATC	5 cut(s)	505, 525, 748, 1135, 1279
DraIII	CACNNNGTG	2 cut(s)	833, 945
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	1000
EarI	CTCTTC	1 cut(s)	1000
Eco130I	CCWWGG	1 cut(s)	106
Eco24I	GRGCYC	3 cut(s)	358, 1350, 1403
Eco31I	GGTCTC	1 cut(s)	169
Eco32I	GATATC	2 cut(s)	451, 1433
Eco47I	GGWCC	1 cut(s)	1111
Eco57I	CTGAAG	1 cut(s)	532
Eco91I	GGTNACC	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	1037
EcoO65I	GGTNACC	1 cut(s)	602
EcoRII	CCWGG	4 cut(s)	302, 607, 967, 1081
EcoRV	GATATC	2 cut(s)	451, 1433
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	3 cut(s)	358, 1350, 1403
ErhI	CCWWGG	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	2 cut(s)	63, 1145
FaqI	GGGAC	2 cut(s)	93, 310
FatI	CATG	2 cut(s)	59, 1141
FauI	CCCGC	1 cut(s)	1389
FauNDI	CATATG	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	1279
Fnu4HI	GCNGC	5 cut(s)	6, 175, 398, 735, 813
FokI	GGATG	1 cut(s)	1241
FriOI	GRGCYC	3 cut(s)	358, 1350, 1403
Fsp4HI	GCNGC	5 cut(s)	6, 175, 398, 735, 813
FspBI	CTAG	6 cut(s)	171, 816, 884, 1028, 1221, 1343
GlaI	GCGC	1 cut(s)	207
GluI	GCNGC	5 cut(s)	6, 175, 398, 735, 813
GsuI	CTGGAG	1 cut(s)	990
HaeIII	GGCC	3 cut(s)	111, 121, 1039
HhaI	GCGC	1 cut(s)	208
Hin1II	CATG	2 cut(s)	63, 1145
Hin6I	GCGC	1 cut(s)	206
HinP1I	GCGC	1 cut(s)	206
HphI	GGTGA	7 cut(s)	12, 241, 272, 439, 614, 716, 845
Hpy166II	GTNNAC	3 cut(s)	541, 565, 1210
Hpy188I	TCNGA	9 cut(s)	68, 117, 551, 574, 687, 769, 1023, 1045, 1279
Hpy188III	TCNNGA	9 cut(s)	91, 746, 752, 976, 1002, 1142, 1151, 1235, 1295
Hpy8I	GTNNAC	3 cut(s)	541, 565, 1210
HpyAV	CCTTC	7 cut(s)	219, 879, 1042, 1046, 1050, 1218, 1448
HpyCH4III	ACNGT	3 cut(s)	30, 518, 1075
HpyCH4IV	ACGT	2 cut(s)	82, 475
HpyCH4V	TGCA	8 cut(s)	503, 521, 665, 734, 782, 1328, 1333, 1370
HpyF10VI	GCNNNNNNNGC	5 cut(s)	809, 821, 1114, 1211, 1354
HpyF3I	CTNAG	6 cut(s)	150, 225, 376, 686, 1044, 1176
HpySE526I	ACGT	2 cut(s)	82, 475
Hsp92II	CATG	2 cut(s)	63, 1145
HspAI	GCGC	1 cut(s)	206
Ksp22I	TGATCA	1 cut(s)	1279
Kzo9I	GATC	5 cut(s)	505, 525, 748, 1135, 1279
LmnI	GCTCC	5 cut(s)	154, 460, 718, 850, 1393
Lsp1109I	GCAGC	3 cut(s)	186, 746, 799
LweI	GCATC	2 cut(s)	474, 877
MaeI	CTAG	6 cut(s)	171, 816, 884, 1028, 1221, 1343
MaeII	ACGT	2 cut(s)	82, 475
MaeIII	GTNAC	6 cut(s)	193, 311, 595, 602, 985, 1338
MalI	GATC	5 cut(s)	507, 527, 750, 1137, 1281
MbiI	CCGCTC	1 cut(s)	1396
MboI	GATC	5 cut(s)	505, 525, 748, 1135, 1279
MboII	GAAGA	5 cut(s)	458, 538, 926, 1017, 1130
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	2 cut(s)	505, 1135
MhlI	GDGCHC	4 cut(s)	35, 358, 1350, 1403
MluCI	AATT	7 cut(s)	273, 479, 558, 588, 644, 1098, 1287
MlyI	GAGTC	8 cut(s)	63, 152, 211, 332, 981, 1002, 1033, 1088
MnlI	CCTC	8 cut(s)	111, 126, 300, 586, 835, 1001, 1138, 1357
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	3 cut(s)	498, 1130, 1193
MslI	CAYNNNNRTG	2 cut(s)	28, 897
MspR9I	CCNGG	4 cut(s)	304, 609, 969, 1083
MunI	CAATTG	1 cut(s)	588
MvaI	CCWGG	4 cut(s)	304, 609, 969, 1083
MwoI	GCNNNNNNNGC	5 cut(s)	809, 821, 1114, 1211, 1354
NdeI	CATATG	1 cut(s)	530
NdeII	GATC	5 cut(s)	505, 525, 748, 1135, 1279
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	63, 1145
NlaIV	GGNNCC	3 cut(s)	462, 852, 1038
NmuCI	GTSAC	2 cut(s)	193, 602
OliI	CACNNNNGTG	1 cut(s)	28
PagI	TCATGA	1 cut(s)	1141
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	651, 917, 1412
PflFI	GACNNNGTC	1 cut(s)	763
PkrI	GCNGC	5 cut(s)	7, 176, 399, 736, 814
PleI	GAGTC	8 cut(s)	63, 151, 211, 331, 980, 1001, 1032, 1088
PpsI	GAGTC	8 cut(s)	63, 151, 211, 331, 980, 1001, 1032, 1088
PsiI	TTATAA	3 cut(s)	278, 1014, 1447
Psp6I	CCWGG	4 cut(s)	302, 607, 967, 1081
PspEI	GGTNACC	1 cut(s)	602
PspGI	CCWGG	4 cut(s)	302, 607, 967, 1081
PspN4I	GGNNCC	3 cut(s)	462, 852, 1038
PspPI	GGNCC	2 cut(s)	1037, 1111
PstI	CTGCAG	2 cut(s)	736, 1335
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	505, 1135
PsyI	GACNNNGTC	1 cut(s)	763
RsaI	GTAC	3 cut(s)	882, 966, 1087
RsaNI	GTAC	3 cut(s)	881, 965, 1086
RseI	CAYNNNNRTG	2 cut(s)	28, 897
SaqAI	TTAA	3 cut(s)	498, 1130, 1193
SatI	GCNGC	5 cut(s)	6, 175, 398, 735, 813
Sau3AI	GATC	5 cut(s)	505, 525, 748, 1135, 1279
Sau96I	GGNCC	2 cut(s)	1037, 1111
ScaI	AGTACT	1 cut(s)	882
SchI	GAGTC	8 cut(s)	63, 152, 211, 332, 981, 1002, 1033, 1088
ScrFI	CCNGG	4 cut(s)	304, 609, 969, 1083
SduI	GDGCHC	4 cut(s)	35, 358, 1350, 1403
SfaNI	GCATC	2 cut(s)	474, 877
SfcI	CTRYAG	2 cut(s)	732, 1331
SinI	GGWCC	1 cut(s)	1111
SmiMI	CAYNNNNRTG	2 cut(s)	28, 897
SmlI	CTYRAG	3 cut(s)	454, 637, 1295
SmoI	CTYRAG	3 cut(s)	454, 637, 1295
Sse9I	AATT	7 cut(s)	273, 479, 558, 588, 644, 1098, 1287
SsiI	CCGC	3 cut(s)	5, 397, 1396
SspI	AATATT	1 cut(s)	319
SspMI	CTAG	6 cut(s)	171, 816, 884, 1028, 1221, 1343
StyD4I	CCNGG	4 cut(s)	302, 607, 967, 1081
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	30, 518, 1075
TaiI	ACGT	2 cut(s)	85, 478
TaqI	TCGA	4 cut(s)	72, 102, 1003, 1236
TasI	AATT	7 cut(s)	273, 479, 558, 588, 644, 1098, 1287
TatI	WGTACW	1 cut(s)	880
TauI	GCSGC	2 cut(s)	8, 400
TfiI	GAWTC	3 cut(s)	651, 917, 1412
Tru1I	TTAA	3 cut(s)	498, 1130, 1193
Tru9I	TTAA	3 cut(s)	498, 1130, 1193
TscAI	CASTG	7 cut(s)	48, 202, 255, 388, 588, 789, 1335
TseFI	GTSAC	2 cut(s)	193, 602
TseI	GCWGC	3 cut(s)	174, 734, 812
Tsp45I	GTSAC	2 cut(s)	193, 602
TspDTI	ATGAA	4 cut(s)	201, 789, 927, 1130
TspGWI	ACGGA	3 cut(s)	1244, 1387, 1415
TspRI	CASTG	7 cut(s)	48, 202, 255, 388, 588, 789, 1335
Tth111I	GACNNNGTC	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	1111
XapI	RAATTY	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	6 cut(s)	171, 816, 884, 1028, 1221, 1343
ZrmI	AGTACT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.