Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008290

Physical Location & Seq

Genomic Coordinates Reverse (-)

3245029 .. 3252849

Gene Structure 7821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G067100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGCCGCCGCCGTGTCATCACCATGCTCAACTCCACTGATGACCCAGAAACCAAGTCTCAGAGTGGATTTCAGACATGGGTTTTTGAAAAGCTTTGATTTTGGCCACCAGAAACCAATCAAATGGAAGACTTTCCACCTCAAGGAGCTGGTGGTCTCTGCTAGCACTGACAATGCAGTTTCTGTCACTGATCCTGTGCCTTCATTGACTCGCTCTAAGGTGAAACGCCATACAATTTCAGTGTTTGTTGGGGATGAGAGTGGGATAATAAACCGAATAGCAGGGGTTTTCGCCAGGAGGGGTTACAATATTGAGTCCCTTGCCGTTGGTTTGAACAAGGACAAGGCTCTCTTTACCATAGTTGTGTCTGGAACTGAAAAGGTTTTGCGGCAAGTTGTTGAACAGCTCAACAAGTTGGTGAATGTGATAAAGGTTGAAGACATATCAAAGGAGGAGCACGTAGAACGTGAATTGATGCTTATCAAACTGAATGCAGATCCAAGTACCCTTGCAGAGATCATGTGGTTAGTGGACATCTTCAGAGCAAAAATTGTCGATATCTCTGAACATTCACTGACAATTGAGGTTACTGGAGACCCTGGGAAGGTGGTTGCTGTTCAAAGAAACTTAAGCAAGTTTGGTATCAAAGAACTTGCGAGAACTGGAAAGATTGCTTTGAGACGAGAAAAGATGGGTGAGACAGCTCCTTTTTGGAGATTCTCTGCAGCTTCTTATCCAGATCTTGAAAAGTCAATGGCTATTGATGATCTTGCGGTGAAAGCAAACCGTTCACTCAATGTTGATGCCAGTACTGCCTCAAGGGGTGATGTTTATCCTGTGGAGCCCTATGATGACTTTCGTTTGAATAAAGTTCTTGATGCTCATTGGGGTGTTCTCTATGATGAAGATCCAGGTGGGGTTCAATCACACACTTTGTCTATGATTGTGAATGACTGCCCTGGAGTTCTAAACATAGTTACAGGAGTCATGTCTCGAAGAGGTTATAATATTCAGAGCCTAGCTGTGGGGCCTGCTGAAAAGGAAGGGCTTTCTCGCATTACAACTGTCGTTCCCGGTACTGACGATTCAATTACCAAGTTGGTCCAGCAACTTCACAAGTTAATAGATCTTCACGAGGTTCGGGATATTACACACTTACCATTTGCAGAGCGAGAGTTGATGTTGATAAAGATTGCTGTGAACACTACTGCTAGGAGGGATGTTCTTGATATTGCCAGCATTTTCCGTGCTAAAGCCGTTGATGTATCTGATCATACAATTACCCTTGAGCTTACTGGTGATATAAATAAGATGGTTGCACTGCAGAAGTTACTTGAGCCCTATGGGATTTGTGAGGTTGCACGAACTGGGAGGGTGGCGTTGGAGCGGGAGTCTGGTGTGGATTCCACTTATCTTCGTGGATACCCCCTTCCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

ACT ACT_5 ALS_ss_C

Protein Analysis

480

Amino Acids

53.0

Weight (kDa)

7.21

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16290 AT5G16290
fragaria_vesca	FvH4_3g07270 FvH4_3g07270 FvH4_3g07270
malus_domestica	MD00G1009000.v1.1 MD10G1275300.v1.1
prunus_persica	Prupe.4G067100_v2.0.a1 Prupe.4G067100_v2.0.a1 Prupe.4G067100_v2.0.a1
pyrus_communis	pycom05g27400 pycom10g23000
rosa_chinensis	RchiOBHm_Chr5g0011751
rosa_laevigata	RLG00000031859
rosa_multiflora	Rmu_ssc0000357.1_g000019
rosa_roxburghii	Rroxscaffold_1G00064800
rosa_rugosa	Rorug04G0458600 Rorug04G0458600
rosa_samantha	Rh5AG090400 Rh5BG085900 Rh5CG099700 Rh5DG086100
rosa_wichuraiana	Rw5G007890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1005
AccBSI	CCGCTC	1 cut(s)	1387
AciI	CCGC	5 cut(s)	6, 9, 388, 773, 1387
AclWI	GGATC	3 cut(s)	185, 491, 902
AcoI	YGGCCR	2 cut(s)	3, 103
AcuI	CTGAAG	1 cut(s)	523
AfaI	GTAC	3 cut(s)	505, 811, 1078
AfiI	CCNNNNNNNGG	3 cut(s)	142, 604, 1024
AflII	CTTAAG	1 cut(s)	628
AgsI	TTSAA	9 cut(s)	88, 334, 401, 437, 620, 746, 865, 923, 1089
AjnI	CCWGG	4 cut(s)	293, 598, 910, 958
AluBI	AGCT	7 cut(s)	93, 148, 406, 704, 728, 1022, 1291
AluI	AGCT	7 cut(s)	93, 148, 406, 704, 728, 1022, 1291
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	6 cut(s)	62, 160, 588, 673, 692, 996
AlwI	GGATC	3 cut(s)	185, 491, 902
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	3 cut(s)	3, 103, 1028
ApeKI	GCWGC	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	1028, 1102
AsuC2I	CCSGG	1 cut(s)	1074
AsuHPI	GGTGA	7 cut(s)	12, 232, 430, 707, 787, 836, 1310
AsuNHI	GCTAGC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	1102
BalI	TGGCCA	1 cut(s)	105
BanII	GRGCYC	2 cut(s)	846, 1341
BauI	CACGAG	1 cut(s)	1133
BbsI	GAAGAC	2 cut(s)	134, 444
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	737
BccI	CCATC	2 cut(s)	685, 1306
BceAI	ACGGC	2 cut(s)	308, 1241
BciT130I	CCWGG	4 cut(s)	295, 600, 912, 960
BciVI	GTATCC	1 cut(s)	1415
BclI	TGATCA	1 cut(s)	1270
BcnI	CCSGG	1 cut(s)	1074
BcoDI	GTCTC	6 cut(s)	62, 160, 588, 673, 692, 996
BfaI	CTAG	3 cut(s)	162, 1019, 1212
BfmI	CTRYAG	2 cut(s)	723, 1322
BfrI	CTTAAG	1 cut(s)	628
BfuI	GTATCC	1 cut(s)	1415
BglII	AGATCT	2 cut(s)	739, 1126
BisI	GCNGC	4 cut(s)	6, 9, 389, 726
BlsI	GCNGC	4 cut(s)	7, 10, 390, 727
BmcAI	AGTACT	1 cut(s)	811
Bme1390I	CCNGG	5 cut(s)	295, 600, 912, 960, 1074
Bme18I	GGWCC	1 cut(s)	1102
BmgT120I	GGNCC	2 cut(s)	1028, 1102
BmiI	GGNNCC	2 cut(s)	843, 1029
BmrFI	CCNGG	5 cut(s)	295, 600, 912, 960, 1074
BmrI	ACTGGG	1 cut(s)	1377
BmsI	GCATC	3 cut(s)	465, 793, 868
BmtI	GCTAGC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	1377
BpiI	GAAGAC	2 cut(s)	134, 444
BpmI	CTGGAG	2 cut(s)	612, 981
BpuEI	CTTGAG	4 cut(s)	125, 802, 1307, 1355
BpuMI	CCSGG	1 cut(s)	1074
BsaAI	YACGTR	1 cut(s)	460
BsaBI	GATNNNNATC	3 cut(s)	479, 831, 906
BsaI	GGTCTC	2 cut(s)	160, 588
BsaJI	CCNNGG	3 cut(s)	598, 599, 958
BsaXI	ACNNNNNCTCC	2 cut(s)	1376, 1406
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 604, 1024
Bse1I	ACTGG	6 cut(s)	595, 667, 807, 1300, 1372, 1433
Bse8I	GATNNNNATC	3 cut(s)	479, 831, 906
BseBI	CCWGG	4 cut(s)	295, 600, 912, 960
BseDI	CCNNGG	3 cut(s)	598, 599, 958
BseGI	GGATG	2 cut(s)	259, 1225
BseJI	GATNNNNATC	3 cut(s)	479, 831, 906
BseLI	CCNNNNNNNGG	3 cut(s)	142, 604, 1024
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	6 cut(s)	595, 667, 807, 1300, 1372, 1433
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	737
BshFI	GGCC	3 cut(s)	5, 105, 1030
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	1074
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	3 cut(s)	142, 604, 1024
BsmAI	GTCTC	6 cut(s)	62, 160, 588, 673, 692, 996
BsmBI	CGTCTC	1 cut(s)	673
BsmFI	GGGAC	1 cut(s)	301
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	3 cut(s)	5, 105, 1030
Bso31I	GGTCTC	2 cut(s)	160, 588
Bsp1286I	GDGCHC	3 cut(s)	459, 846, 1341
Bsp143I	GATC	8 cut(s)	190, 496, 516, 739, 766, 907, 1126, 1270
BspACI	CCGC	5 cut(s)	6, 9, 388, 773, 1387
BspANI	GGCC	3 cut(s)	5, 105, 1030
BspCNI	CTCAG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	843, 1029
BspMAI	CTGCAG	2 cut(s)	727, 1326
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	3 cut(s)	185, 491, 902
BspTI	CTTAAG	1 cut(s)	628
BspTNI	GGTCTC	2 cut(s)	160, 588
BsrBI	CCGCTC	1 cut(s)	1387
BsrI	ACTGG	6 cut(s)	595, 667, 807, 1300, 1372, 1433
BssECI	CCNNGG	3 cut(s)	598, 599, 958
BssMI	GATC	8 cut(s)	190, 496, 516, 739, 766, 907, 1126, 1270
BssSI	CACGAG	1 cut(s)	1133
Bst2BI	CACGAG	1 cut(s)	1133
Bst2UI	CCWGG	4 cut(s)	295, 600, 912, 960
Bst4CI	ACNGT	2 cut(s)	788, 1066
Bst6I	CTCTTC	1 cut(s)	991
BstAFI	CTTAAG	1 cut(s)	628
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	3 cut(s)	163, 1032, 1237
BstDEI	CTNAG	2 cut(s)	59, 216
BstF5I	GGATG	2 cut(s)	259, 1225
BstKTI	GATC	8 cut(s)	193, 499, 519, 742, 769, 910, 1129, 1273
BstMAI	GTCTC	6 cut(s)	62, 160, 588, 673, 692, 996
BstMBI	GATC	8 cut(s)	190, 496, 516, 739, 766, 907, 1126, 1270
BstMWI	GCNNNNNNNGC	2 cut(s)	779, 812
BstNI	CCWGG	4 cut(s)	295, 600, 912, 960
BstSCI	CCNGG	5 cut(s)	293, 598, 910, 958, 1072
BstSFI	CTRYAG	2 cut(s)	723, 1322
BstV1I	GCAGC	1 cut(s)	737
BstV2I	GAAGAC	2 cut(s)	134, 444
BstX2I	RGATCY	4 cut(s)	496, 739, 907, 1126
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	4 cut(s)	496, 739, 907, 1126
BsuI	GTATCC	1 cut(s)	1415
BsuRI	GGCC	3 cut(s)	5, 105, 1030
BtsCI	GGATG	2 cut(s)	259, 1225
BtsI	GCAGTG	1 cut(s)	1319
BtsIMutI	CAGTG	6 cut(s)	35, 165, 186, 246, 572, 1319
Cac8I	GCNNGC	3 cut(s)	163, 1032, 1237
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	1028, 1102
Csp6I	GTAC	3 cut(s)	504, 810, 1077
CviAII	CATG	4 cut(s)	24, 77, 520, 988
CviQI	GTAC	3 cut(s)	504, 810, 1077
DdeI	CTNAG	2 cut(s)	59, 216
DpnI	GATC	8 cut(s)	192, 498, 518, 741, 768, 909, 1128, 1272
DpnII	GATC	8 cut(s)	190, 496, 516, 739, 766, 907, 1126, 1270
EaeI	YGGCCR	2 cut(s)	3, 103
Eam1104I	CTCTTC	1 cut(s)	991
EarI	CTCTTC	1 cut(s)	991
Eco24I	GRGCYC	2 cut(s)	846, 1341
Eco31I	GGTCTC	2 cut(s)	160, 588
Eco32I	GATATC	1 cut(s)	559
Eco47I	GGWCC	1 cut(s)	1102
Eco57I	CTGAAG	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	1028
EcoRII	CCWGG	4 cut(s)	293, 598, 910, 958
EcoRV	GATATC	1 cut(s)	559
EcoT38I	GRGCYC	2 cut(s)	846, 1341
Esp3I	CGTCTC	1 cut(s)	673
FaeI	CATG	4 cut(s)	27, 80, 523, 991
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	4 cut(s)	23, 76, 519, 987
FauI	CCCGC	1 cut(s)	1380
FbaI	TGATCA	1 cut(s)	1270
Fnu4HI	GCNGC	4 cut(s)	6, 9, 389, 726
FokI	GGATG	2 cut(s)	266, 1232
FriOI	GRGCYC	2 cut(s)	846, 1341
Fsp4HI	GCNGC	4 cut(s)	6, 9, 389, 726
FspBI	CTAG	3 cut(s)	162, 1019, 1212
GluI	GCNGC	4 cut(s)	6, 9, 389, 726
GsuI	CTGGAG	2 cut(s)	612, 981
HaeIII	GGCC	3 cut(s)	5, 105, 1030
HapII	CCGG	1 cut(s)	1074
Hin1II	CATG	4 cut(s)	27, 80, 523, 991
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	7 cut(s)	208, 314, 717, 984, 1085, 1391, 1403
HpaII	CCGG	1 cut(s)	1074
HphI	GGTGA	7 cut(s)	12, 232, 430, 707, 787, 836, 1310
Hpy166II	GTNNAC	3 cut(s)	532, 791, 1201
Hpy188I	TCNGA	6 cut(s)	62, 74, 542, 565, 1014, 1270
Hpy188III	TCNNGA	8 cut(s)	369, 737, 743, 875, 993, 1133, 1142, 1226
Hpy8I	GTNNAC	3 cut(s)	532, 791, 1201
HpyAV	CCTTC	4 cut(s)	210, 598, 1037, 1439
HpyCH4III	ACNGT	2 cut(s)	788, 1066
HpyCH4IV	ACGT	2 cut(s)	459, 466
HpyCH4V	TGCA	8 cut(s)	176, 494, 512, 725, 1166, 1319, 1324, 1361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	779, 812
HpyF3I	CTNAG	2 cut(s)	59, 216
HpySE526I	ACGT	2 cut(s)	459, 466
Hsp92II	CATG	4 cut(s)	27, 80, 523, 991
Ksp22I	TGATCA	1 cut(s)	1270
Kzo9I	GATC	8 cut(s)	190, 496, 516, 739, 766, 907, 1126, 1270
LmnI	GCTCC	5 cut(s)	145, 454, 709, 841, 1384
Lsp1109I	GCAGC	1 cut(s)	737
LweI	GCATC	3 cut(s)	465, 793, 868
MaeI	CTAG	3 cut(s)	162, 1019, 1212
MaeII	ACGT	2 cut(s)	459, 466
MaeIII	GTNAC	5 cut(s)	184, 302, 586, 976, 1329
MalI	GATC	8 cut(s)	192, 498, 518, 741, 768, 909, 1128, 1272
MbiI	CCGCTC	1 cut(s)	1387
MboI	GATC	8 cut(s)	190, 496, 516, 739, 766, 907, 1126, 1270
MboII	GAAGA	7 cut(s)	139, 449, 529, 917, 1008, 1121, 1406
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	4 cut(s)	496, 739, 907, 1126
MhlI	GDGCHC	3 cut(s)	459, 846, 1341
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	6 cut(s)	234, 470, 549, 579, 1089, 1278
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	4 cut(s)	202, 323, 993, 1400
MmeI	TCCRAC	1 cut(s)	1362
Mox20I	TGGCCA	1 cut(s)	105
MroXI	GAANNNNTTC	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	2 cut(s)	629, 1121
MslI	CAYNNNNRTG	3 cut(s)	22, 362, 888
Msp20I	TGGCCA	1 cut(s)	105
MspCI	CTTAAG	1 cut(s)	628
MspI	CCGG	1 cut(s)	1074
MspR9I	CCNGG	5 cut(s)	295, 600, 912, 960, 1074
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	4 cut(s)	295, 600, 912, 960
MwoI	GCNNNNNNNGC	2 cut(s)	779, 812
NciI	CCSGG	1 cut(s)	1074
NdeII	GATC	8 cut(s)	190, 496, 516, 739, 766, 907, 1126, 1270
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	4 cut(s)	27, 80, 523, 991
NlaIV	GGNNCC	2 cut(s)	843, 1029
NmuCI	GTSAC	1 cut(s)	184
PasI	CCCWGGG	1 cut(s)	599
PctI	GAATGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	3 cut(s)	717, 1085, 1403
PkrI	GCNGC	4 cut(s)	7, 10, 390, 727
PleI	GAGTC	4 cut(s)	202, 322, 992, 1399
PpsI	GAGTC	4 cut(s)	202, 322, 992, 1399
Ppu21I	YACGTR	1 cut(s)	460
PsiI	TTATAA	1 cut(s)	1005
Psp6I	CCWGG	4 cut(s)	293, 598, 910, 958
PspGI	CCWGG	4 cut(s)	293, 598, 910, 958
PspN4I	GGNNCC	2 cut(s)	843, 1029
PspPI	GGNCC	2 cut(s)	1028, 1102
PstI	CTGCAG	2 cut(s)	727, 1326
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	4 cut(s)	496, 739, 907, 1126
RsaI	GTAC	3 cut(s)	505, 811, 1078
RsaNI	GTAC	3 cut(s)	504, 810, 1077
RseI	CAYNNNNRTG	3 cut(s)	22, 362, 888
SaqAI	TTAA	2 cut(s)	629, 1121
SatI	GCNGC	4 cut(s)	6, 9, 389, 726
Sau3AI	GATC	8 cut(s)	190, 496, 516, 739, 766, 907, 1126, 1270
Sau96I	GGNCC	2 cut(s)	1028, 1102
ScaI	AGTACT	1 cut(s)	811
SchI	GAGTC	4 cut(s)	202, 323, 993, 1400
ScrFI	CCNGG	5 cut(s)	295, 600, 912, 960, 1074
SduI	GDGCHC	3 cut(s)	459, 846, 1341
SfaNI	GCATC	3 cut(s)	465, 793, 868
SfcI	CTRYAG	2 cut(s)	723, 1322
SinI	GGWCC	1 cut(s)	1102
SmiMI	CAYNNNNRTG	3 cut(s)	22, 362, 888
SmlI	CTYRAG	5 cut(s)	140, 628, 817, 1286, 1334
SmoI	CTYRAG	5 cut(s)	140, 628, 817, 1286, 1334
Sse9I	AATT	6 cut(s)	234, 470, 549, 579, 1089, 1278
SsiI	CCGC	5 cut(s)	6, 9, 388, 773, 1387
SspI	AATATT	2 cut(s)	310, 1009
SspMI	CTAG	3 cut(s)	162, 1019, 1212
StyD4I	CCNGG	5 cut(s)	293, 598, 910, 958, 1072
TaaI	ACNGT	2 cut(s)	788, 1066
TaiI	ACGT	2 cut(s)	462, 469
TaqI	TCGA	2 cut(s)	555, 994
TasI	AATT	6 cut(s)	234, 470, 549, 579, 1089, 1278
TatI	WGTACW	1 cut(s)	809
TauI	GCSGC	3 cut(s)	8, 11, 391
TfiI	GAWTC	3 cut(s)	717, 1085, 1403
Tru1I	TTAA	2 cut(s)	629, 1121
Tru9I	TTAA	2 cut(s)	629, 1121
TscAI	CASTG	6 cut(s)	42, 172, 193, 246, 579, 1326
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	192, 918
TspGWI	ACGGA	1 cut(s)	1235
TspRI	CASTG	6 cut(s)	42, 172, 193, 246, 579, 1326
Vha464I	CTTAAG	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	1102
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	3 cut(s)	162, 1019, 1212
ZrmI	AGTACT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.