pycom05g27400

Acetolactate synthase small subunit 1, chloroplastic-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
28389555 .. 28394812
5258 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g27400.7

Sequence Viewer

Length: 1440 bp
ATGGCGGCTGCTGTGTCATCACCGTGCTCCCCTTCACTAGCGGCCCAGAAACCGAGTTTTCGAGTTGATTTCCGGCATGGGTTTTCCACAAGCTTCGATCTTGGCCGCCAGAGGCCGCTCAAATGGAAGAGTTGCGGGCTGAAGAAGCTGGTTGTTTCTGCTAGCACCGGCAATGCTGTTTCTGTCAGTGATTCTGTGCCTTCATTGACTAGTTCTAAGGTCAAGCGCCATACGATTTCAGTGTTTGTTGGGGATGAGAGTGGAATCATAAACCGAATAGCAGGGGTTTTCGCCAGGAGAGGTTACAATATCGAGTCTCTTGCTGTTGGTTTGAACAAGGACAAGGCTCTTTTTACCATAGTTGTGTCTGGAACTGAAAAGGTTTTGCGACAGGTCGTTGAACAGCTTAACAAGTTGGTGAATGTGATAAAGGTTGAAGACATCTCAAGGGAGCCACAAGTAGAACGTGAATTGATGCTTATCAAACTTAATGCGGATCCAAGTACACGTGCAGAGATAATGTGGTTAGTGGACATCTTCAGAGCAAAAATTGTTGATATCTCGGAACAGTCGCTGACAGTTGAGGTTACTGGAGACCCTGGGAAGGTGGTTGCTGTTCAAAGAAACTTAAGCAAGTTTGGAATCAAAGAACTTGCAAGAACTGGAAAGATTGCTTTGAGACGAGAAAAGATGGGTGCGACAGCTCCTTTCTGGAGATTTTCTGCAGCTTCTTATCCAGATCTTGAAAAGTCCACGTCTGATGATGACATTGCAGTGAAAGCAAATGGTACACTCAATAGTGATGCTGGTACCGCCTCAAGGGGAGATGTTTATCCTGTGGAGCCCTATGATGATTTCCGTTCGAATAAAGTTCTTGATGCTCATTGGGGTGTTCTCTATGATGAAGATTCAAGTGGGGTTCGATCCCACACTTTGTCTATGATTGTGAATGACTCTCCTGGGGTTCTAAACATAGTTACAGGAGTCATATCTCGAAGAGGTTATAACATTCAGAGCCTAGCTGTGGGGCCCGCAGAAAAGGAGGGCCTTTCTCGCATTACAACGGTTGTTCCCGGTACAGAGGATTCAATTTCCAAGTTGGTTCAGCAACTTCACAAGTTAATAGATCTTCATGAGGTTCGGGATATTACTCACTTACCATTTGCTGAGCGAGAGTTGATGTTGATAAAGATTGCTGTGAACGCTACTGCTAGAAGGGATGTTCTTGATATTGCCAGCATTTTCCGTGCTAAAGCTGTTGATGTATCTGATCACACAGTTACCCTTGAGCTTACTGGTGATTTGAATAAAATGGTTGCACTGCAGAAGTTACTAGAACCCTATGGGATTTGTGAGGTTGCACGGACTGGGAGGGTGGCGTTGGAGCGGGAGTCTGGTGTGGATTCCACGTATCTCCGCGGATACCCTCTTCCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

480

Amino Acids

52.37

Weight (kDa)

8.74

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1005
Acc65I GGTACC 1 cut(s) 809
AccB1I GGYRCC 1 cut(s) 809
AccBSI CCGCTC 2 cut(s) 118, 1387
AccII CGCG 1 cut(s) 1419
AclWI GGATC 3 cut(s) 491, 504, 918
AcoI YGGCCR 1 cut(s) 103
AcuI CTGAAG 2 cut(s) 161, 523
AcvI CACGTG 1 cut(s) 509
AfaI GTAC 4 cut(s) 505, 790, 811, 1078
AfiI CCNNNNNNNGG 3 cut(s) 604, 819, 1024
AflII CTTAAG 1 cut(s) 628
AflIII ACRYGT 1 cut(s) 506
AgsI TTSAA 8 cut(s) 334, 401, 437, 620, 746, 912, 1089, 1306
AhlI ACTAGT 1 cut(s) 209
AjiI CACGTC 1 cut(s) 756
AjnI CCWGG 3 cut(s) 293, 598, 958
AluBI AGCT 8 cut(s) 93, 148, 406, 704, 728, 1022, 1256, 1291
AluI AGCT 8 cut(s) 93, 148, 406, 704, 728, 1022, 1256, 1291
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 3 cut(s) 321, 588, 673
AlwI GGATC 3 cut(s) 491, 504, 918
AlwNI CAGNNNCTG 1 cut(s) 574
AoxI GGCC 5 cut(s) 42, 103, 113, 1028, 1045
ApaI GGGCCC 1 cut(s) 1032
ApeKI GCWGC 2 cut(s) 8, 725
Asp718I GGTACC 1 cut(s) 809
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 4 cut(s) 43, 1028, 1029, 1045
AsuC2I CCSGG 1 cut(s) 1074
AsuHPI GGTGA 3 cut(s) 12, 430, 1310
AsuII TTCGAA 1 cut(s) 863
AsuNHI GCTAGC 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 1032
BamHI GGATCC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 809
BanII GRGCYC 2 cut(s) 846, 1032
BbrPI CACGTG 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 737
BccI CCATC 1 cut(s) 685
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 3 cut(s) 295, 600, 960
BciVI GTATCC 1 cut(s) 1415
BclI TGATCA 1 cut(s) 1270
BcnI CCSGG 1 cut(s) 1074
BcoDI GTCTC 3 cut(s) 321, 588, 673
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 6 cut(s) 38, 162, 210, 1019, 1212, 1334
BfmI CTRYAG 2 cut(s) 723, 1322
BfoI RGCGCY 1 cut(s) 229
BfrI CTTAAG 1 cut(s) 628
BfuI GTATCC 1 cut(s) 1415
BglII AGATCT 2 cut(s) 739, 1126
BisI GCNGC 6 cut(s) 6, 9, 42, 106, 116, 726
BlpI GCTNAGC 1 cut(s) 1167
BlsI GCNGC 6 cut(s) 7, 10, 43, 107, 117, 727
Bme1390I CCNGG 4 cut(s) 295, 600, 960, 1074
BmgBI CACGTC 1 cut(s) 756
BmgT120I GGNCC 4 cut(s) 43, 1028, 1029, 1045
BmiI GGNNCC 6 cut(s) 453, 498, 811, 843, 1029, 1030
BmrFI CCNGG 4 cut(s) 295, 600, 960, 1074
BmrI ACTGGG 1 cut(s) 1377
BmsI GCATC 3 cut(s) 465, 793, 868
BmtI GCTAGC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 1377
BpiI GAAGAC 1 cut(s) 444
BpmI CTGGAG 2 cut(s) 612, 733
Bpu1102I GCTNAGC 1 cut(s) 1167
Bpu14I TTCGAA 1 cut(s) 863
BpuEI CTTGAG 3 cut(s) 430, 802, 1307
BpuMI CCSGG 1 cut(s) 1074
BsaAI YACGTR 2 cut(s) 509, 1410
BsaBI GATNNNNATC 2 cut(s) 479, 831
BsaI GGTCTC 1 cut(s) 588
BsaJI CCNNGG 4 cut(s) 598, 599, 959, 1417
BsaXI ACNNNNNCTCC 2 cut(s) 1376, 1406
Bsc4I CCNNNNNNNGG 3 cut(s) 604, 819, 1024
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 4 cut(s) 595, 667, 1300, 1372
Bse3DI GCAATG 2 cut(s) 178, 768
Bse8I GATNNNNATC 2 cut(s) 479, 831
BseBI CCWGG 3 cut(s) 295, 600, 960
BseDI CCNNGG 4 cut(s) 598, 599, 959, 1417
BseGI GGATG 2 cut(s) 259, 1225
BseJI GATNNNNATC 2 cut(s) 479, 831
BseLI CCNNNNNNNGG 3 cut(s) 604, 819, 1024
BseMI GCAATG 2 cut(s) 178, 768
BseMII CTCAG 1 cut(s) 1158
BseNI ACTGG 4 cut(s) 595, 667, 1300, 1372
BseSI GKGCMC 1 cut(s) 1032
BseXI GCAGC 1 cut(s) 737
BsgI GTGCAG 1 cut(s) 531
Bsh1236I CGCG 1 cut(s) 1419
BshFI GGCC 5 cut(s) 44, 105, 115, 1030, 1047
BshNI GGYRCC 1 cut(s) 809
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 3 cut(s) 73, 168, 1074
BslI CCNNNNNNNGG 3 cut(s) 604, 819, 1024
BsmAI GTCTC 3 cut(s) 321, 588, 673
BsmBI CGTCTC 1 cut(s) 673
BsnI GGCC 5 cut(s) 44, 105, 115, 1030, 1047
Bso31I GGTCTC 1 cut(s) 588
Bsp119I TTCGAA 1 cut(s) 863
Bsp120I GGGCCC 1 cut(s) 1028
Bsp1286I GDGCHC 3 cut(s) 29, 846, 1032
Bsp143I GATC 6 cut(s) 97, 496, 739, 923, 1126, 1270
Bsp1720I GCTNAGC 1 cut(s) 1167
BspANI GGCC 5 cut(s) 44, 105, 115, 1030, 1047
BspCNI CTCAG 1 cut(s) 1159
BspFNI CGCG 1 cut(s) 1419
BspHI TCATGA 1 cut(s) 1132
BspLI GGNNCC 6 cut(s) 453, 498, 811, 843, 1029, 1030
BspMAI CTGCAG 2 cut(s) 727, 1326
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 3 cut(s) 491, 504, 918
BspT104I TTCGAA 1 cut(s) 863
BspT107I GGYRCC 1 cut(s) 809
BspTI CTTAAG 1 cut(s) 628
BspTNI GGTCTC 1 cut(s) 588
BsrBI CCGCTC 2 cut(s) 118, 1387
BsrDI GCAATG 2 cut(s) 178, 768
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 4 cut(s) 595, 667, 1300, 1372
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 598, 599, 959, 1417
BssMI GATC 6 cut(s) 97, 496, 739, 923, 1126, 1270
Bst2UI CCWGG 3 cut(s) 295, 600, 960
Bst4CI ACNGT 5 cut(s) 24, 570, 580, 1066, 1279
Bst6I CTCTTC 3 cut(s) 122, 991, 1434
BstAFI CTTAAG 1 cut(s) 628
BstBAI YACGTR 2 cut(s) 509, 1410
BstBI TTCGAA 1 cut(s) 863
BstC8I GCNNGC 4 cut(s) 137, 163, 1032, 1237
BstDEI CTNAG 2 cut(s) 216, 1167
BstDSI CCRYGG 1 cut(s) 1417
BstF5I GGATG 2 cut(s) 259, 1225
BstFNI CGCG 1 cut(s) 1419
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 6 cut(s) 100, 499, 742, 926, 1129, 1273
BstMAI GTCTC 3 cut(s) 321, 588, 673
BstMBI GATC 6 cut(s) 97, 496, 739, 923, 1126, 1270
BstMWI GCNNNNNNNGC 5 cut(s) 145, 779, 812, 1053, 1202
BstNI CCWGG 3 cut(s) 295, 600, 960
BstSCI CCNGG 4 cut(s) 293, 598, 958, 1072
BstSFI CTRYAG 2 cut(s) 723, 1322
BstSLI GKGCMC 1 cut(s) 1032
BstUI CGCG 1 cut(s) 1419
BstV1I GCAGC 1 cut(s) 737
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 3 cut(s) 496, 739, 1126
BstYI RGATCY 3 cut(s) 496, 739, 1126
BsuI GTATCC 1 cut(s) 1415
BsuRI GGCC 5 cut(s) 44, 105, 115, 1030, 1047
BtgI CCRYGG 1 cut(s) 1417
BtrI CACGTC 1 cut(s) 756
BtsCI GGATG 2 cut(s) 259, 1225
BtsI GCAGTG 2 cut(s) 780, 1319
BtsIMutI CAGTG 4 cut(s) 193, 246, 780, 1319
Cac8I GCNNGC 4 cut(s) 137, 163, 1032, 1237
CaiI CAGNNNCTG 1 cut(s) 574
CciI TCATGA 1 cut(s) 1132
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 4 cut(s) 43, 1028, 1029, 1045
Cfr42I CCGCGG 1 cut(s) 1420
Csp6I GTAC 4 cut(s) 504, 789, 810, 1077
CviAII CATG 2 cut(s) 77, 1133
CviQI GTAC 4 cut(s) 504, 789, 810, 1077
DdeI CTNAG 2 cut(s) 216, 1167
DpnI GATC 6 cut(s) 99, 498, 741, 925, 1128, 1272
DpnII GATC 6 cut(s) 97, 496, 739, 923, 1126, 1270
EaeI YGGCCR 1 cut(s) 103
Eam1104I CTCTTC 3 cut(s) 122, 991, 1434
EarI CTCTTC 3 cut(s) 122, 991, 1434
Eco24I GRGCYC 2 cut(s) 846, 1032
Eco31I GGTCTC 1 cut(s) 588
Eco32I GATATC 1 cut(s) 559
Eco57I CTGAAG 2 cut(s) 161, 523
Eco72I CACGTG 1 cut(s) 509
EcoO109I RGGNCCY 2 cut(s) 1028, 1045
EcoRII CCWGG 3 cut(s) 293, 598, 958
EcoRV GATATC 1 cut(s) 559
EcoT38I GRGCYC 2 cut(s) 846, 1032
Esp3I CGTCTC 1 cut(s) 673
FaeI CATG 2 cut(s) 80, 1136
FatI CATG 2 cut(s) 76, 1132
FauI CCCGC 3 cut(s) 128, 1039, 1380
FbaI TGATCA 1 cut(s) 1270
Fnu4HI GCNGC 6 cut(s) 6, 9, 42, 106, 116, 726
FokI GGATG 2 cut(s) 266, 1232
FriOI GRGCYC 2 cut(s) 846, 1032
Fsp4HI GCNGC 6 cut(s) 6, 9, 42, 106, 116, 726
FspBI CTAG 6 cut(s) 38, 162, 210, 1019, 1212, 1334
GlaI GCGC 1 cut(s) 227
GluI GCNGC 6 cut(s) 6, 9, 42, 106, 116, 726
GsuI CTGGAG 2 cut(s) 612, 733
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 5 cut(s) 44, 105, 115, 1030, 1047
HapII CCGG 3 cut(s) 73, 168, 1074
HhaI GCGC 1 cut(s) 228
Hin1II CATG 2 cut(s) 80, 1136
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 91
HpaII CCGG 3 cut(s) 73, 168, 1074
HphI GGTGA 3 cut(s) 12, 430, 1310
Hpy166II GTNNAC 5 cut(s) 506, 532, 753, 791, 1201
Hpy188I TCNGA 5 cut(s) 542, 565, 760, 1014, 1270
Hpy188III TCNNGA 9 cut(s) 369, 712, 737, 743, 875, 993, 1133, 1142, 1226
Hpy8I GTNNAC 5 cut(s) 506, 532, 753, 791, 1201
HpyAV CCTTC 4 cut(s) 42, 210, 598, 1209
HpyCH4III ACNGT 5 cut(s) 24, 570, 580, 1066, 1279
HpyCH4IV ACGT 4 cut(s) 466, 508, 755, 1409
HpyCH4V TGCA 7 cut(s) 512, 656, 725, 773, 1319, 1324, 1361
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 779, 812, 1053, 1202
HpyF3I CTNAG 2 cut(s) 216, 1167
HpySE526I ACGT 4 cut(s) 466, 508, 755, 1409
Hsp92II CATG 2 cut(s) 80, 1136
HspAI GCGC 1 cut(s) 226
KpnI GGTACC 1 cut(s) 813
Ksp22I TGATCA 1 cut(s) 1270
KspI CCGCGG 1 cut(s) 1420
Kzo9I GATC 6 cut(s) 97, 496, 739, 923, 1126, 1270
LmnI GCTCC 5 cut(s) 32, 451, 709, 841, 1384
Lsp1109I GCAGC 1 cut(s) 737
LweI GCATC 3 cut(s) 465, 793, 868
MaeI CTAG 6 cut(s) 38, 162, 210, 1019, 1212, 1334
MaeII ACGT 4 cut(s) 466, 508, 755, 1409
MaeIII GTNAC 5 cut(s) 302, 586, 976, 1279, 1329
MalI GATC 6 cut(s) 99, 498, 741, 925, 1128, 1272
MbiI CCGCTC 2 cut(s) 118, 1387
MboI GATC 6 cut(s) 97, 496, 739, 923, 1126, 1270
MboII GAAGA 8 cut(s) 139, 154, 449, 529, 917, 1008, 1121, 1421
MflI RGATCY 3 cut(s) 496, 739, 1126
MhlI GDGCHC 3 cut(s) 29, 846, 1032
MluCI AATT 3 cut(s) 470, 549, 1089
MlyI GAGTC 4 cut(s) 323, 947, 993, 1400
MmeI TCCRAC 1 cut(s) 1362
MseI TTAA 4 cut(s) 408, 489, 629, 1121
MslI CAYNNNNRTG 4 cut(s) 22, 362, 773, 888
MspA1I CMGCKG 1 cut(s) 1419
MspCI CTTAAG 1 cut(s) 628
MspI CCGG 3 cut(s) 73, 168, 1074
MspR9I CCNGG 4 cut(s) 295, 600, 960, 1074
MvaI CCWGG 3 cut(s) 295, 600, 960
MvnI CGCG 1 cut(s) 1419
MwoI GCNNNNNNNGC 5 cut(s) 145, 779, 812, 1053, 1202
NciI CCSGG 1 cut(s) 1074
NdeII GATC 6 cut(s) 97, 496, 739, 923, 1126, 1270
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 2 cut(s) 80, 1136
NlaIV GGNNCC 6 cut(s) 453, 498, 811, 843, 1029, 1030
NspV TTCGAA 1 cut(s) 863
PagI TCATGA 1 cut(s) 1132
PasI CCCWGGG 1 cut(s) 599
PfeI GAWTC 6 cut(s) 191, 264, 642, 908, 1085, 1403
PkrI GCNGC 6 cut(s) 7, 10, 43, 107, 117, 727
PleI GAGTC 4 cut(s) 322, 947, 992, 1399
PmaCI CACGTG 1 cut(s) 509
PmlI CACGTG 1 cut(s) 509
PpsI GAGTC 4 cut(s) 322, 947, 992, 1399
Ppu21I YACGTR 2 cut(s) 509, 1410
PsiI TTATAA 1 cut(s) 1005
Psp6I CCWGG 3 cut(s) 293, 598, 958
PspCI CACGTG 1 cut(s) 509
PspGI CCWGG 3 cut(s) 293, 598, 958
PspN4I GGNNCC 6 cut(s) 453, 498, 811, 843, 1029, 1030
PspOMI GGGCCC 1 cut(s) 1028
PspPI GGNCC 4 cut(s) 43, 1028, 1029, 1045
PstI CTGCAG 2 cut(s) 727, 1326
PstNI CAGNNNCTG 1 cut(s) 574
PsuI RGATCY 3 cut(s) 496, 739, 1126
RsaI GTAC 4 cut(s) 505, 790, 811, 1078
RsaNI GTAC 4 cut(s) 504, 789, 810, 1077
RseI CAYNNNNRTG 4 cut(s) 22, 362, 773, 888
SacII CCGCGG 1 cut(s) 1420
SaqAI TTAA 4 cut(s) 408, 489, 629, 1121
SatI GCNGC 6 cut(s) 6, 9, 42, 106, 116, 726
Sau3AI GATC 6 cut(s) 97, 496, 739, 923, 1126, 1270
Sau96I GGNCC 4 cut(s) 43, 1028, 1029, 1045
SchI GAGTC 4 cut(s) 323, 947, 993, 1400
ScrFI CCNGG 4 cut(s) 295, 600, 960, 1074
SduI GDGCHC 3 cut(s) 29, 846, 1032
SfaNI GCATC 3 cut(s) 465, 793, 868
SfcI CTRYAG 2 cut(s) 723, 1322
Sfr303I CCGCGG 1 cut(s) 1420
SfuI TTCGAA 1 cut(s) 863
SgrBI CCGCGG 1 cut(s) 1420
SmiMI CAYNNNNRTG 4 cut(s) 22, 362, 773, 888
SmlI CTYRAG 4 cut(s) 445, 628, 817, 1286
SmoI CTYRAG 4 cut(s) 445, 628, 817, 1286
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 3 cut(s) 470, 549, 1089
SspMI CTAG 6 cut(s) 38, 162, 210, 1019, 1212, 1334
StyD4I CCNGG 4 cut(s) 293, 598, 958, 1072
TaaI ACNGT 5 cut(s) 24, 570, 580, 1066, 1279
TaiI ACGT 4 cut(s) 469, 511, 758, 1412
TaqI TCGA 6 cut(s) 61, 96, 312, 863, 922, 994
TasI AATT 3 cut(s) 470, 549, 1089
TatI WGTACW 1 cut(s) 503
TauI GCSGC 4 cut(s) 8, 44, 108, 118
TfiI GAWTC 6 cut(s) 191, 264, 642, 908, 1085, 1403
Tru1I TTAA 4 cut(s) 408, 489, 629, 1121
Tru9I TTAA 4 cut(s) 408, 489, 629, 1121
TscAI CASTG 4 cut(s) 193, 246, 780, 1326
TseI GCWGC 2 cut(s) 8, 725
TspDTI ATGAA 3 cut(s) 192, 918, 1121
TspGWI ACGGA 3 cut(s) 848, 1235, 1378
TspRI CASTG 4 cut(s) 193, 246, 780, 1326
Vha464I CTTAAG 1 cut(s) 628
XspI CTAG 6 cut(s) 38, 162, 210, 1019, 1212, 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.