Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008599

Physical Location & Seq

Genomic Coordinates Forward (+)

5392576 .. 5394573

Gene Structure 1998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCTTTGGCCGAGATAAACAAGAATGAAGTCGACATTGTTATTGGGGCTCTTAATGCTGACCTTACACAGTTTTTGACCAGCTGGAGGCCTTTCTTCTCCGGATTCCATCTGATTGTTGTCAAAGATCCTGAGCTCAAGGAGGAACTCAACATACCAGAAGGCTTTGACGTAGATGTCTACTCTAAGACTGACATGGAAAAGGTTGTGGGCGCATCCAATTCCACCATGTTCTCTGGCTATTCTTGCAGATATTTCGGTTATCTCGTATCTAAAAAGAAGTACATTGTCTCTATTGATGATGATTGTGTCCCTGCTAAAGATCCGAAGGGGTTCCTAGTGGATGCTGTTACTCAGCACGTGATCAACCTTGAAAACCCAGCCACGCCTCTCTTCTTCAACACCCTTTATGATCCTTACTGCGAGGGAGCGGATTTTGTCCGTGGATACCCTTTCAGCCTCAGAAGTGGTGTCCCTTGTGCTGCATCTTGTGGGCTTTGGCTTAATCTAGCTGATCTTGATGCTCCAACACAAGCTCTCAAGACAGAGAAAAGGAACACTGCATATGTTGATGCGGTTATGACTGTCCCGGCCAAGGCTATGCTACCCATAAGCGGAATCAACATTGCTTTTAACCGCGAGTTGGTGGGTCCAGCTTTGGTGCCTGCACTCAGATTGGCTGGAGAAGGGAAAGTGAGATGGGAAACACTTGAAGATGTTTGGTGTGGGATGTGTCTGAAACATATCTCTGATCATTTGGGTTATGGTGTGAAAACCGGACTGCCTTATGTGTGGAGAAACGAGAGAGGAGATGCAGTGGAGAGTTTGAGGAAGAAATGGGAAGGAATGAAGCTGATGGAGAAAAGTGTTCCATTTTTCGATTCATTGAAATTGCCCGAGACTGCGCTTAAAGTTGAAGATTGTGTGATTGAGCTTGCTAAAGCGGTGAAAGAGCAGTTAGGTTCAGATGATCCTGCCTTTACGCAAGCTGCTGATGCTATGGTTAAGTGGGTCCAGCTCTGGAATTCTGTTAATTCTAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009225 GO:0009506 GO:0009628 GO:0009651 GO:0009832 GO:0009987 GO:0012505 GO:0016853 GO:0016866 GO:0030054 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0052691 GO:0055044 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

348

Amino Acids

38.58

Weight (kDa)

5.06

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RGP	PF03214	6 - 346	1.5e-186	Reversibly glycosylated polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16510 AT5G16510
fragaria_vesca	FvH4_6g00840 FvH4_6g00840
malus_domestica	MD04G1240800.v1.1 MD12G1257700.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1
pyrus_communis	pycom04g21260 pycom12g23650
rosa_chinensis	RchiOBHm_Chr3g0448321
rosa_laevigata	RLG00000025928
rosa_multiflora	Rmu_sc0005582.1_g000007 Rmu_sc0015167.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426460
rosa_rugosa	Rorug02G0610200 Rorug02G0610300 Rorug02G0610400 Rorug02G0610500
rosa_samantha	Rh3AG010000 Rh3BG009600 Rh3CG009500 Rh3DG010100
rosa_wichuraiana	Rw3G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	661
AccBSI	CCGCTC	1 cut(s)	431
AccI	GTMKAC	2 cut(s)	33, 180
AccII	CGCG	1 cut(s)	639
AccIII	TCCGGA	1 cut(s)	101
AciI	CCGC	5 cut(s)	431, 575, 615, 637, 944
AclWI	GGATC	4 cut(s)	122, 317, 407, 965
AcoI	YGGCCR	2 cut(s)	9, 591
AcsI	RAATTY	1 cut(s)	1024
AcvI	CACGTG	1 cut(s)	361
AfaI	GTAC	1 cut(s)	284
AfeI	AGCGCT	1 cut(s)	1042
AfiI	CCNNNNNNNGG	4 cut(s)	87, 595, 614, 643
AgsI	TTSAA	5 cut(s)	374, 400, 713, 889, 917
AluBI	AGCT	9 cut(s)	84, 136, 512, 536, 656, 853, 934, 989, 1018
AluI	AGCT	9 cut(s)	84, 136, 512, 536, 656, 853, 934, 989, 1018
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	295, 893
AlwI	GGATC	4 cut(s)	122, 317, 407, 965
Ama87I	CYCGRG	1 cut(s)	896
Aor13HI	TCCGGA	1 cut(s)	101
Aor51HI	AGCGCT	1 cut(s)	1042
AoxI	GGCC	3 cut(s)	9, 89, 591
ApeKI	GCWGC	2 cut(s)	482, 989
ApoI	RAATTY	1 cut(s)	1024
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	3 cut(s)	215, 907, 1043
AspS9I	GGNCC	2 cut(s)	650, 1012
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	958
AvaI	CYCGRG	1 cut(s)	896
AvaII	GGWCC	2 cut(s)	650, 1012
BanI	GGYRCC	1 cut(s)	661
BanII	GRGCYC	2 cut(s)	52, 138
BbrPI	CACGTG	1 cut(s)	361
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	469, 976
BccI	CCATC	3 cut(s)	117, 693, 850
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciVI	GTATCC	1 cut(s)	440
BclI	TGATCA	2 cut(s)	363, 751
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	2 cut(s)	295, 893
BfaI	CTAG	3 cut(s)	338, 509, 1038
BfoI	RGCGCY	1 cut(s)	1044
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	2 cut(s)	483, 990
BlsI	GCNGC	2 cut(s)	484, 991
Bme1390I	CCNGG	1 cut(s)	590
Bme18I	GGWCC	2 cut(s)	650, 1012
BmeT110I	CYCGRG	1 cut(s)	896
BmgT120I	GGNCC	2 cut(s)	650, 1012
BmiI	GGNNCC	4 cut(s)	335, 651, 663, 1013
BmrFI	CCNGG	1 cut(s)	590
BmsI	GCATC	7 cut(s)	224, 334, 494, 511, 562, 802, 985
BpmI	CTGGAG	2 cut(s)	106, 702
Bpu10I	CCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	2 cut(s)	122, 524
BpuMI	CCSGG	1 cut(s)	590
BsaAI	YACGTR	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	442, 594
BsaWI	WCCGGW	2 cut(s)	101, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	801, 831
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 595, 614, 643
Bse3DI	GCAATG	1 cut(s)	624
BseAI	TCCGGA	1 cut(s)	101
BseDI	CCNNGG	2 cut(s)	442, 594
BseGI	GGATG	3 cut(s)	215, 349, 735
BseLI	CCNNNNNNNGG	4 cut(s)	87, 595, 614, 643
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	4 cut(s)	123, 368, 475, 685
BseRI	GAGGAG	1 cut(s)	822
BseXI	GCAGC	2 cut(s)	469, 976
BseYI	CCCAGC	1 cut(s)	379
BsgI	GTGCAG	1 cut(s)	651
Bsh1236I	CGCG	1 cut(s)	639
BshFI	GGCC	3 cut(s)	11, 91, 593
BshNI	GGYRCC	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	896
BsiSI	CCGG	3 cut(s)	102, 590, 777
BslFI	GGGAC	3 cut(s)	296, 458, 572
BslI	CCNNNNNNNGG	4 cut(s)	87, 595, 614, 643
BsmAI	GTCTC	2 cut(s)	295, 893
BsmFI	GGGAC	3 cut(s)	296, 458, 572
BsnI	GGCC	3 cut(s)	11, 91, 593
BsoBI	CYCGRG	1 cut(s)	896
Bsp1286I	GDGCHC	2 cut(s)	52, 138
Bsp13I	TCCGGA	1 cut(s)	101
Bsp143I	GATC	7 cut(s)	127, 322, 363, 412, 514, 751, 970
BspACI	CCGC	5 cut(s)	431, 575, 615, 637, 944
BspANI	GGCC	3 cut(s)	11, 91, 593
BspCNI	CTCAG	4 cut(s)	124, 367, 474, 684
BspEI	TCCGGA	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	639
BspLI	GGNNCC	4 cut(s)	335, 651, 663, 1013
BspPI	GGATC	4 cut(s)	122, 317, 407, 965
BspT107I	GGYRCC	1 cut(s)	661
BsrBI	CCGCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	624
BssECI	CCNNGG	2 cut(s)	442, 594
BssMI	GATC	7 cut(s)	127, 322, 363, 412, 514, 751, 970
BssT1I	CCWWGG	1 cut(s)	594
Bst4CI	ACNGT	2 cut(s)	72, 586
Bst6I	CTCTTC	1 cut(s)	398
BstBAI	YACGTR	1 cut(s)	361
BstC8I	GCNNGC	3 cut(s)	666, 936, 987
BstDEI	CTNAG	5 cut(s)	132, 186, 354, 461, 671
BstDSI	CCRYGG	1 cut(s)	442
BstF5I	GGATG	3 cut(s)	215, 349, 735
BstFNI	CGCG	1 cut(s)	639
BstH2I	RGCGCY	1 cut(s)	1044
BstHHI	GCGC	3 cut(s)	215, 907, 1043
BstKTI	GATC	7 cut(s)	130, 325, 366, 415, 517, 754, 973
BstMAI	GTCTC	2 cut(s)	295, 893
BstMBI	GATC	7 cut(s)	127, 322, 363, 412, 514, 751, 970
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 246, 995
BstSCI	CCNGG	1 cut(s)	588
BstUI	CGCG	1 cut(s)	639
BstV1I	GCAGC	2 cut(s)	469, 976
BstX2I	RGATCY	2 cut(s)	127, 322
BstYI	RGATCY	2 cut(s)	127, 322
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	3 cut(s)	11, 91, 593
BtgI	CCRYGG	1 cut(s)	442
BtsCI	GGATG	3 cut(s)	215, 349, 735
BtsI	GCAGTG	2 cut(s)	558, 822
BtsIMutI	CAGTG	2 cut(s)	558, 822
Cac8I	GCNNGC	3 cut(s)	666, 936, 987
CfoI	GCGC	3 cut(s)	215, 907, 1043
Cfr13I	GGNCC	2 cut(s)	650, 1012
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	2 cut(s)	196, 229
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	5 cut(s)	132, 186, 354, 461, 671
DpnI	GATC	7 cut(s)	129, 324, 365, 414, 516, 753, 972
DpnII	GATC	7 cut(s)	127, 322, 363, 412, 514, 751, 970
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
EaeI	YGGCCR	2 cut(s)	9, 591
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	594
Eco147I	AGGCCT	1 cut(s)	91
Eco24I	GRGCYC	2 cut(s)	52, 138
Eco47I	GGWCC	2 cut(s)	650, 1012
Eco47III	AGCGCT	1 cut(s)	1042
Eco53kI	GAGCTC	1 cut(s)	136
Eco72I	CACGTG	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	896
EcoICRI	GAGCTC	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	1024
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	2 cut(s)	52, 138
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	2 cut(s)	199, 232
FaqI	GGGAC	3 cut(s)	296, 458, 572
FatI	CATG	2 cut(s)	195, 228
FauNDI	CATATG	1 cut(s)	565
FbaI	TGATCA	2 cut(s)	363, 751
FblI	GTMKAC	2 cut(s)	33, 180
Fnu4HI	GCNGC	2 cut(s)	483, 990
FokI	GGATG	3 cut(s)	202, 356, 742
FriOI	GRGCYC	2 cut(s)	52, 138
Fsp4HI	GCNGC	2 cut(s)	483, 990
FspBI	CTAG	3 cut(s)	338, 509, 1038
GlaI	GCGC	3 cut(s)	214, 906, 1042
GluI	GCNGC	2 cut(s)	483, 990
GsaI	CCCAGC	1 cut(s)	383
GsuI	CTGGAG	2 cut(s)	106, 702
HaeII	RGCGCY	1 cut(s)	1044
HaeIII	GGCC	3 cut(s)	11, 91, 593
HapII	CCGG	3 cut(s)	102, 590, 777
HhaI	GCGC	3 cut(s)	215, 907, 1043
Hin1II	CATG	2 cut(s)	199, 232
Hin6I	GCGC	3 cut(s)	213, 905, 1041
HinP1I	GCGC	3 cut(s)	213, 905, 1041
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	105, 618, 881
HpaII	CCGG	3 cut(s)	102, 590, 777
HphI	GGTGA	1 cut(s)	958
Hpy166II	GTNNAC	2 cut(s)	34, 181
Hpy188I	TCNGA	7 cut(s)	114, 327, 464, 674, 738, 751, 967
Hpy188III	TCNNGA	5 cut(s)	102, 131, 518, 541, 1021
Hpy8I	GTNNAC	2 cut(s)	34, 181
HpyAV	CCTTC	4 cut(s)	155, 322, 680, 836
HpyCH4III	ACNGT	2 cut(s)	72, 586
HpyCH4IV	ACGT	2 cut(s)	171, 360
HpyCH4V	TGCA	5 cut(s)	249, 485, 563, 668, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 246, 995
HpyF3I	CTNAG	5 cut(s)	132, 186, 354, 461, 671
HpySE526I	ACGT	2 cut(s)	171, 360
Hsp92II	CATG	2 cut(s)	199, 232
HspAI	GCGC	3 cut(s)	213, 905, 1041
Kpn2I	TCCGGA	1 cut(s)	101
Ksp22I	TGATCA	2 cut(s)	363, 751
Kzo9I	GATC	7 cut(s)	127, 322, 363, 412, 514, 751, 970
LmnI	GCTCC	2 cut(s)	428, 529
Lsp1109I	GCAGC	2 cut(s)	469, 976
LweI	GCATC	7 cut(s)	224, 334, 494, 511, 562, 802, 985
MaeI	CTAG	3 cut(s)	338, 509, 1038
MaeII	ACGT	2 cut(s)	171, 360
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	7 cut(s)	129, 324, 365, 414, 516, 753, 972
MbiI	CCGCTC	1 cut(s)	431
MboI	GATC	7 cut(s)	127, 322, 363, 412, 514, 751, 970
MboII	GAAGA	6 cut(s)	88, 385, 388, 725, 844, 929
MflI	RGATCY	2 cut(s)	127, 322
MhlI	GDGCHC	2 cut(s)	52, 138
MluCI	AATT	4 cut(s)	220, 890, 1024, 1033
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	7 cut(s)	81, 136, 399, 418, 470, 800, 822
MroI	TCCGGA	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	6 cut(s)	54, 504, 633, 909, 1005, 1032
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	3 cut(s)	102, 590, 777
MspR9I	CCNGG	1 cut(s)	590
MvnI	CGCG	1 cut(s)	639
MwoI	GCNNNNNNNGC	3 cut(s)	56, 246, 995
NciI	CCSGG	1 cut(s)	590
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	7 cut(s)	127, 322, 363, 412, 514, 751, 970
NlaIII	CATG	2 cut(s)	199, 232
NlaIV	GGNNCC	4 cut(s)	335, 651, 663, 1013
NmeAIII	GCCGAG	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	91
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	3 cut(s)	105, 618, 881
PkrI	GCNGC	2 cut(s)	484, 991
PmaCI	CACGTG	1 cut(s)	361
PmlI	CACGTG	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	138
PspCI	CACGTG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	379
PspN4I	GGNNCC	4 cut(s)	335, 651, 663, 1013
PspPI	GGNCC	2 cut(s)	650, 1012
PsrI	GAACNNNNNNTAC	2 cut(s)	138, 170
PsuI	RGATCY	2 cut(s)	127, 322
PvuII	CAGCTG	1 cut(s)	84
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	138
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	6 cut(s)	54, 504, 633, 909, 1005, 1032
SatI	GCNGC	2 cut(s)	483, 990
Sau3AI	GATC	7 cut(s)	127, 322, 363, 412, 514, 751, 970
Sau96I	GGNCC	2 cut(s)	650, 1012
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	2 cut(s)	52, 138
SfaNI	GCATC	7 cut(s)	224, 334, 494, 511, 562, 802, 985
SinI	GGWCC	2 cut(s)	650, 1012
SmlI	CTYRAG	2 cut(s)	137, 539
SmoI	CTYRAG	2 cut(s)	137, 539
Sse9I	AATT	4 cut(s)	220, 890, 1024, 1033
SseBI	AGGCCT	1 cut(s)	91
SsiI	CCGC	5 cut(s)	431, 575, 615, 637, 944
SspMI	CTAG	3 cut(s)	338, 509, 1038
SstI	GAGCTC	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	91
StyD4I	CCNGG	1 cut(s)	588
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	72, 586
TaiI	ACGT	2 cut(s)	174, 363
TaqI	TCGA	2 cut(s)	33, 879
TasI	AATT	4 cut(s)	220, 890, 1024, 1033
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	3 cut(s)	105, 618, 881
Tru1I	TTAA	6 cut(s)	54, 504, 633, 909, 1005, 1032
Tru9I	TTAA	6 cut(s)	54, 504, 633, 909, 1005, 1032
TscAI	CASTG	2 cut(s)	565, 822
TseI	GCWGC	2 cut(s)	482, 989
TspDTI	ATGAA	3 cut(s)	42, 863, 873
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	2 cut(s)	565, 822
VpaK11BI	GGWCC	2 cut(s)	650, 1012
XapI	RAATTY	1 cut(s)	1024
XmiI	GTMKAC	2 cut(s)	33, 180
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	3 cut(s)	338, 509, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.