Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008599

Physical Location & Seq

Genomic Coordinates Reverse (-)

72697731 .. 72699684

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0610200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGAATGGATGTCTGGTCACAAGGATGTTCTGCCGTTCACCGCCATGATTATCGTGGAGTGCATCAACGTGGGGTCAGGCGTCTTCTTCAAGGCAGCTGCCTCAAGAGGGTTGAGCTACTATGTTCTCATTGTCTACTCTTATGCAATTGCCACCATTCTCCTCCTCCCTCTGCTTTTCATCTTTCACAGAACAGGGCTTCCACCATTCAAGCTCTCTCTCATATTTAAACTCTTCCTCCTTGGGATAATCCGGTTTTCGGGTAGTTTATGTGTATATAAAGGTATAGAATACAGTTCACCAACTCTTGCTTCAGCTATTGGTAACCTTTCCCCAGCTTTTATCTTCATACTTGCTGTAACCTTCAGTATGGAAAGACTAAATTGGAGAAGCAGAAGCACACGAGCCAAAGTGATGGGTACTCTAGTATCAATATCAGGCGCACTAGTAGTGGTGCTCTATAAGGGCCCAACAATTCTATCACCTACGACTCCATCCATTCTCGGAATGTCAGAAAAGGAGTGGGTAAAAGGTGGCCTATTACTTACTCTTGGATACCTTCTCTTCTCTATGTGGGCTATCCTTCAGACCCATATCATGAAGACAGACCCAGATGAGCTAGTTCTGGCCTTCTTATACAACTTGTGTGGGACAATTGTATCAGCACCAACATGTTTGATAGCAGAGAAAAACTTGATTGCCTGGAGATTAACGCCCGGTATACCATTGCTTGCCACTATATACTCAGGGTCCTTTGTTTTATCCTTTGGCATCCTTGTTCACATATGGGGCATGCACATGAAGGGTCCTGTGTATGTAGCAAGCTTCAAGCCATTATCAATTGTTATTGCTGCTGCTTCGAGTTTCATATTCCTTGGTGATGCTCTCTATCTCAGCAGTGTTGTTGGAGCTATAGTACTCTCCATAGGATTTTATGCTGTTATATGGGGAAAGGCAAAAGAAGAAAAAATGAATGAAGACTGTGTCTTACCAATAGGTAAGACACCTTTGTTGGTAGGCTACAAATCGGTTGAAAATATGTTACACTGTGTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009225 GO:0009506 GO:0009628 GO:0009651 GO:0009832 GO:0009987 GO:0012505 GO:0016853 GO:0016866 GO:0030054 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0052691 GO:0055044 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

352

Amino Acids

38.5

Weight (kDa)

9.28

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	22 - 152	3e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16510 AT5G16510
fragaria_vesca	FvH4_6g00840 FvH4_6g00840
malus_domestica	MD04G1240800.v1.1 MD12G1257700.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1
pyrus_communis	pycom04g21260 pycom12g23650
rosa_chinensis	RchiOBHm_Chr3g0448321
rosa_laevigata	RLG00000025928
rosa_multiflora	Rmu_sc0005582.1_g000007 Rmu_sc0015167.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426460
rosa_rugosa	Rorug02G0610200 Rorug02G0610300 Rorug02G0610400 Rorug02G0610500
rosa_samantha	Rh3AG010000 Rh3BG009600 Rh3CG009500 Rh3DG010100
rosa_wichuraiana	Rw3G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	135, 721
AciI	CCGC	1 cut(s)	42
AcuI	CTGAAG	3 cut(s)	297, 349, 569
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	421, 918
AfiI	CCNNNNNNNGG	2 cut(s)	108, 259
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	4 cut(s)	91, 211, 829, 1034
AhlI	ACTAGT	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	701
AjuI	GAANNNNNNNTTGG	2 cut(s)	295, 327
AloI	GAACNNNNNNTCC	2 cut(s)	184, 216
AluBI	AGCT	8 cut(s)	98, 117, 214, 317, 338, 619, 825, 911
AluI	AGCT	8 cut(s)	98, 117, 214, 317, 338, 619, 825, 911
Alw21I	GWGCWC	1 cut(s)	459
AoxI	GGCC	3 cut(s)	466, 535, 627
ApaI	GGGCCC	1 cut(s)	470
ApeKI	GCWGC	4 cut(s)	95, 98, 851, 854
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	4 cut(s)	466, 467, 750, 806
AsuC2I	CCSGG	1 cut(s)	717
AsuHPI	GGTGA	4 cut(s)	31, 291, 474, 890
AvaII	GGWCC	2 cut(s)	750, 806
BaeGI	GKGCMC	1 cut(s)	470
BaeI	ACNNNNGTAYC	6 cut(s)	411, 411, 444, 444, 642, 675
BanII	GRGCYC	1 cut(s)	470
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	3 cut(s)	76, 608, 984
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	85, 107, 838, 841
BccI	CCATC	2 cut(s)	409, 502
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	703
BciVI	GTATCC	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	717
BcuI	ACTAGT	1 cut(s)	445
BfaI	CTAG	3 cut(s)	425, 446, 620
BfmI	CTRYAG	1 cut(s)	912
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	4 cut(s)	96, 99, 852, 855
BlsI	GCNGC	4 cut(s)	97, 100, 853, 856
BmcAI	AGTACT	1 cut(s)	918
Bme1390I	CCNGG	2 cut(s)	703, 717
Bme18I	GGWCC	2 cut(s)	750, 806
BmgT120I	GGNCC	4 cut(s)	466, 467, 750, 806
BmiI	GGNNCC	3 cut(s)	468, 751, 807
BmrFI	CCNGG	2 cut(s)	703, 717
BmsI	GCATC	3 cut(s)	72, 780, 871
BpiI	GAAGAC	3 cut(s)	76, 608, 984
BpmI	CTGGAG	1 cut(s)	724
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	717
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	241, 874
BsaWI	WCCGGW	1 cut(s)	252
BsaXI	ACNNNNNCTCC	4 cut(s)	222, 252, 900, 930
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 259
Bse3DI	GCAATG	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	703
BseDI	CCNNGG	2 cut(s)	241, 874
BseGI	GGATG	4 cut(s)	15, 31, 494, 771
BseLI	CCNNNNNNNGG	2 cut(s)	108, 259
BseMI	GCAATG	1 cut(s)	725
BseMII	CTCAG	2 cut(s)	759, 907
BseRI	GAGGAG	2 cut(s)	152, 155
BseSI	GKGCMC	1 cut(s)	470
BseXI	GCAGC	4 cut(s)	85, 107, 838, 841
BseYI	CCCAGC	1 cut(s)	334
BshFI	GGCC	3 cut(s)	468, 537, 629
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	2 cut(s)	253, 717
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	2 cut(s)	108, 259
BsmFI	GGGAC	1 cut(s)	664
BsnI	GGCC	3 cut(s)	468, 537, 629
Bsp120I	GGGCCC	1 cut(s)	466
Bsp1286I	GDGCHC	2 cut(s)	459, 470
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	3 cut(s)	468, 537, 629
BspCNI	CTCAG	2 cut(s)	758, 906
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	3 cut(s)	468, 751, 807
BsrDI	GCAATG	1 cut(s)	725
BssECI	CCNNGG	2 cut(s)	241, 874
BssNAI	GTATAC	1 cut(s)	722
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	241, 874
Bst1107I	GTATAC	1 cut(s)	722
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	703
Bst4CI	ACNGT	3 cut(s)	296, 983, 1049
Bst6I	CTCTTC	2 cut(s)	239, 569
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	732, 794, 823
BstDEI	CTNAG	2 cut(s)	745, 893
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	4 cut(s)	15, 31, 494, 771
BstHHI	GCGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	703
BstNSI	RCATGY	2 cut(s)	675, 796
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	701, 715
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	1 cut(s)	470
BstV1I	GCAGC	4 cut(s)	85, 107, 838, 841
BstV2I	GAAGAC	3 cut(s)	76, 608, 984
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstZ17I	GTATAC	1 cut(s)	722
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	468, 537, 629
BtsCI	GGATG	4 cut(s)	15, 31, 494, 771
BtsI	GCAGTG	1 cut(s)	904
BtsIMutI	CAGTG	2 cut(s)	904, 1045
Cac8I	GCNNGC	3 cut(s)	732, 794, 823
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	1 cut(s)	443
Cfr13I	GGNCC	4 cut(s)	466, 467, 750, 806
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	420, 917
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	5 cut(s)	46, 598, 672, 793, 799
CviQI	GTAC	2 cut(s)	420, 917
DdeI	CTNAG	2 cut(s)	745, 893
DraI	TTTAAA	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	239, 569
EarI	CTCTTC	2 cut(s)	239, 569
Eco130I	CCWWGG	2 cut(s)	241, 874
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	750, 806
Eco57I	CTGAAG	3 cut(s)	297, 349, 569
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	3 cut(s)	466, 750, 806
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	701
EcoT14I	CCWWGG	2 cut(s)	241, 874
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	2 cut(s)	241, 874
FaeI	CATG	5 cut(s)	49, 601, 675, 796, 802
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	5 cut(s)	45, 597, 671, 792, 798
FauNDI	CATATG	1 cut(s)	785
FblI	GTMKAC	2 cut(s)	135, 721
Fnu4HI	GCNGC	4 cut(s)	96, 99, 852, 855
FokI	GGATG	4 cut(s)	22, 38, 481, 758
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	4 cut(s)	96, 99, 852, 855
FspBI	CTAG	3 cut(s)	425, 446, 620
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	4 cut(s)	96, 99, 852, 855
GsaI	CCCAGC	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	724
HaeIII	GGCC	3 cut(s)	468, 537, 629
HapII	CCGG	2 cut(s)	253, 717
HgaI	GACGC	1 cut(s)	70
HhaI	GCGC	1 cut(s)	443
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	5 cut(s)	49, 601, 675, 796, 802
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	1 cut(s)	490
HpaII	CCGG	2 cut(s)	253, 717
HphI	GGTGA	4 cut(s)	31, 291, 474, 890
Hpy166II	GTNNAC	5 cut(s)	39, 136, 299, 722, 781
Hpy188I	TCNGA	3 cut(s)	506, 514, 588
Hpy188III	TCNNGA	2 cut(s)	105, 598
Hpy8I	GTNNAC	5 cut(s)	39, 136, 299, 722, 781
HpyAV	CCTTC	5 cut(s)	373, 569, 593, 640, 796
HpyCH4III	ACNGT	3 cut(s)	296, 983, 1049
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	3 cut(s)	63, 146, 796
HpyF3I	CTNAG	2 cut(s)	745, 893
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	5 cut(s)	49, 601, 675, 796, 802
HspAI	GCGC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	908
Lsp1109I	GCAGC	4 cut(s)	85, 107, 838, 841
LweI	GCATC	3 cut(s)	72, 780, 871
MaeI	CTAG	3 cut(s)	425, 446, 620
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	4 cut(s)	17, 323, 358, 1041
MboII	GAAGA	8 cut(s)	76, 79, 226, 337, 556, 613, 974, 989
MfeI	CAATTG	3 cut(s)	147, 654, 840
MhlI	GDGCHC	2 cut(s)	459, 470
MluCI	AATT	5 cut(s)	147, 382, 474, 654, 840
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	886
MnlI	CCTC	6 cut(s)	101, 112, 173, 176, 180, 248
MseI	TTAA	2 cut(s)	228, 710
MslI	CAYNNNNRTG	5 cut(s)	24, 44, 68, 670, 797
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	253, 717
MspR9I	CCNGG	2 cut(s)	703, 717
MunI	CAATTG	3 cut(s)	147, 654, 840
MvaI	CCWGG	1 cut(s)	703
NciI	CCSGG	1 cut(s)	717
NdeI	CATATG	1 cut(s)	785
NlaIII	CATG	5 cut(s)	49, 601, 675, 796, 802
NlaIV	GGNNCC	3 cut(s)	468, 751, 807
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	2 cut(s)	675, 796
PaeI	GCATGC	1 cut(s)	796
PagI	TCATGA	1 cut(s)	597
PciI	ACATGT	1 cut(s)	671
PflFI	GACNNNGTC	1 cut(s)	983
PkrI	GCNGC	4 cut(s)	97, 100, 853, 856
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PpuMI	RGGWCCY	2 cut(s)	750, 806
PscI	ACATGT	1 cut(s)	671
Psp5II	RGGWCCY	2 cut(s)	750, 806
Psp6I	CCWGG	1 cut(s)	701
PspEI	GGTNACC	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	701
PspN4I	GGNNCC	3 cut(s)	468, 751, 807
PspOMI	GGGCCC	1 cut(s)	466
PspPI	GGNCC	4 cut(s)	466, 467, 750, 806
PspPPI	RGGWCCY	2 cut(s)	750, 806
PsyI	GACNNNGTC	1 cut(s)	983
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	421, 918
RsaNI	GTAC	2 cut(s)	420, 917
RseI	CAYNNNNRTG	5 cut(s)	24, 44, 68, 670, 797
SaqAI	TTAA	2 cut(s)	228, 710
SatI	GCNGC	4 cut(s)	96, 99, 852, 855
Sau96I	GGNCC	4 cut(s)	466, 467, 750, 806
ScaI	AGTACT	1 cut(s)	918
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	703, 717
SduI	GDGCHC	2 cut(s)	459, 470
SfaNI	GCATC	3 cut(s)	72, 780, 871
SfcI	CTRYAG	1 cut(s)	912
SinI	GGWCC	2 cut(s)	750, 806
SmiMI	CAYNNNNRTG	5 cut(s)	24, 44, 68, 670, 797
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
SpeI	ACTAGT	1 cut(s)	445
SphI	GCATGC	1 cut(s)	796
Sse9I	AATT	5 cut(s)	147, 382, 474, 654, 840
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	3 cut(s)	425, 446, 620
StyD4I	CCNGG	2 cut(s)	701, 715
StyI	CCWWGG	2 cut(s)	241, 874
TaaI	ACNGT	3 cut(s)	296, 983, 1049
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	860
TasI	AATT	5 cut(s)	147, 382, 474, 654, 840
TatI	WGTACW	1 cut(s)	916
Tru1I	TTAA	2 cut(s)	228, 710
Tru9I	TTAA	2 cut(s)	228, 710
TscAI	CASTG	2 cut(s)	904, 1052
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	4 cut(s)	95, 98, 851, 854
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	7 cut(s)	169, 337, 614, 815, 856, 986, 990
TspRI	CASTG	2 cut(s)	904, 1052
Tth111I	GACNNNGTC	1 cut(s)	983
VpaK11BI	GGWCC	2 cut(s)	750, 806
XceI	RCATGY	2 cut(s)	675, 796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	2 cut(s)	135, 721
XspI	CTAG	3 cut(s)	425, 446, 620
ZrmI	AGTACT	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.