Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008599

Physical Location & Seq

Genomic Coordinates Reverse (-)

72700332 .. 72702058

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0610300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCACTTCAATCTCGTATATGGGGCTCAGTGCCTTTTGCTGCCATGGTGCTGGTCGAGTGCGCAGAAATTGGAGTATCAACGATAAGTAAAGCAGCCATGTCACAAGGGATGAGCCATTTTGTTTTCATTGTTTACTATAATGCACTAGGTACCGTCCTGCTTTTCCCTTATTTCATCTTCCAAAGAAACAAGAGAGCTCCTTTGAATTGCAAACTCATTTGTAGATTCTTCCTTCTTGGCTTAATAGGGAGTTCAGGAAAAATTTTGTTCTTTGCTGGTGTCAAATACAGTTCACCTACTCTTTCAGCAGCACTGGCAAATCTTACCCCCATCTTCACTTTCTTGCTTGCCATAGCTTTCAGGATGGAAAAGCTTGATTTGAGGCAACCAAGCGGTCAAGCCAAATCCTTGGGCACCATTATATCAGTGTGTGGGGCACTGATAGTGACCTTCTACAAGGGCCCTGCTGTTTTGATGGCTTCCTTATCACATTCTGGCTTCAAAAATCAGCATATACATTCAGAGCACTCAGCGTGGGTTTTTGGAGGTCTTCTACTTGCAATTCAATGTATTGTGTCTTCATCATGGAATATCGCTCAGGCAGCTACGGTCAAGGATTATCCAGAAGAAATGACCATAGTCTTCTTCTACACCCTCTTTTTGACGATTCAATGCTCAGTTATCTCACTGTTTGTGGAATGGAAAAATCCAAGTGCATGGAAATTGGAGCTCGGAATTGAGATAGTTGCCATTCTCTATGCGGCGATTTTTGTGAGTGTGTTCCGCATTGGTGTTCATGTTTGGTGCTTGCACAAGAAGGGGCCTGTTTATGTAGCCATGTTCAAGCCATTGGGAATTGCTATTGCAGTGGCAATGGTTGTTATTTTCCTTGGTGATGCTCTTTATCTTGGCAGTGTGATCGGATCTGTTGTAATTGCGTTCGGATTTTATACGGTGATATGGGCACAAATAAAAGAAAAGAAGATGGTGCCTGATAATGAAGTGCAAAGATTAGAATCATCCATCCAAAGGGCTCCTCTTTTGCCAACCGATGTCACTGAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009225 GO:0009506 GO:0009628 GO:0009651 GO:0009832 GO:0009987 GO:0012505 GO:0016853 GO:0016866 GO:0030054 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0052691 GO:0055044 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

356

Amino Acids

39.16

Weight (kDa)

9.18

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	25 - 151	3.6e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16510 AT5G16510
fragaria_vesca	FvH4_6g00840 FvH4_6g00840
malus_domestica	MD04G1240800.v1.1 MD12G1257700.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1
pyrus_communis	pycom04g21260 pycom12g23650
rosa_chinensis	RchiOBHm_Chr3g0448321
rosa_laevigata	RLG00000025928
rosa_multiflora	Rmu_sc0005582.1_g000007 Rmu_sc0015167.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426460
rosa_rugosa	Rorug02G0610200 Rorug02G0610300 Rorug02G0610400 Rorug02G0610500
rosa_samantha	Rh3AG010000 Rh3BG009600 Rh3CG009500 Rh3DG010100
rosa_wichuraiana	Rw3G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	64
Acc65I	GGTACC	1 cut(s)	152
AccB1I	GGYRCC	3 cut(s)	152, 416, 991
AciI	CCGC	3 cut(s)	396, 764, 787
AclWI	GGATC	1 cut(s)	934
AcsI	RAATTY	1 cut(s)	264
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	1032
AgsI	TTSAA	6 cut(s)	11, 208, 505, 569, 674, 847
AluBI	AGCT	5 cut(s)	200, 359, 376, 608, 733
AluI	AGCT	5 cut(s)	200, 359, 376, 608, 733
Alw21I	GWGCWC	3 cut(s)	202, 531, 735
AlwI	GGATC	1 cut(s)	934
AoxI	GGCC	2 cut(s)	463, 824
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	4 cut(s)	41, 95, 311, 605
ApoI	RAATTY	1 cut(s)	264
Asp718I	GGTACC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	3 cut(s)	463, 464, 824
AsuHPI	GGTGA	3 cut(s)	288, 908, 970
BaeGI	GKGCMC	4 cut(s)	419, 442, 467, 970
BanI	GGYRCC	3 cut(s)	152, 416, 991
BanII	GRGCYC	5 cut(s)	29, 202, 467, 735, 1039
BarI	GAAGNNNNNNTAC	2 cut(s)	565, 597
BbsI	GAAGAC	3 cut(s)	545, 573, 637
Bbv12I	GWGCWC	3 cut(s)	202, 531, 735
BbvI	GCAGC	4 cut(s)	28, 107, 323, 617
BccI	CCATC	5 cut(s)	341, 361, 472, 982, 1034
BcgI	CGANNNNNNTGC	2 cut(s)	904, 938
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	5 cut(s)	42, 96, 312, 606, 765
BlsI	GCNGC	5 cut(s)	43, 97, 313, 607, 766
BmgT120I	GGNCC	3 cut(s)	463, 464, 824
BmiI	GGNNCC	6 cut(s)	154, 418, 465, 825, 993, 1038
BmsI	GCATC	1 cut(s)	889
BoxI	GACNNNNGTC	1 cut(s)	641
BpiI	GAAGAC	3 cut(s)	545, 573, 637
Bpu10I	CCTNAGC	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	1018
BsaJI	CCNNGG	3 cut(s)	45, 411, 892
Bsc4I	CCNNNNNNNGG	1 cut(s)	1032
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	1018
BseDI	CCNNGG	3 cut(s)	45, 411, 892
BseGI	GGATG	4 cut(s)	117, 372, 1022, 1026
BseJI	GATNNNNATC	1 cut(s)	1018
BseLI	CCNNNNNNNGG	1 cut(s)	1032
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	4 cut(s)	42, 546, 614, 693
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	1029
BseSI	GKGCMC	4 cut(s)	419, 442, 467, 970
BseXI	GCAGC	4 cut(s)	28, 107, 323, 617
BshFI	GGCC	2 cut(s)	465, 826
BshNI	GGYRCC	3 cut(s)	152, 416, 991
BsiHKAI	GWGCWC	3 cut(s)	202, 531, 735
BslI	CCNNNNNNNGG	1 cut(s)	1032
BsnI	GGCC	2 cut(s)	465, 826
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	9 cut(s)	29, 202, 419, 442, 467, 531, 735, 970, 1039
Bsp143I	GATC	2 cut(s)	921, 926
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	3 cut(s)	396, 764, 787
BspANI	GGCC	2 cut(s)	465, 826
BspCNI	CTCAG	4 cut(s)	41, 545, 613, 692
BspLI	GGNNCC	6 cut(s)	154, 418, 465, 825, 993, 1038
BspPI	GGATC	1 cut(s)	934
BspT107I	GGYRCC	3 cut(s)	152, 416, 991
BsrDI	GCAATG	1 cut(s)	882
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	3 cut(s)	45, 411, 892
BssMI	GATC	2 cut(s)	921, 926
BssT1I	CCWWGG	3 cut(s)	45, 411, 892
Bst4CI	ACNGT	5 cut(s)	157, 293, 613, 693, 958
BstC8I	GCNNGC	2 cut(s)	351, 812
BstDEI	CTNAG	4 cut(s)	28, 532, 600, 679
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	4 cut(s)	117, 372, 1022, 1026
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	924, 929
BstMBI	GATC	2 cut(s)	921, 926
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 605
BstPAI	GACNNNNGTC	1 cut(s)	641
BstSLI	GKGCMC	4 cut(s)	419, 442, 467, 970
BstV1I	GCAGC	4 cut(s)	28, 107, 323, 617
BstV2I	GAAGAC	3 cut(s)	545, 573, 637
BstX2I	RGATCY	1 cut(s)	926
BstXI	CCANNNNNNTGG	3 cut(s)	52, 412, 720
BstYI	RGATCY	1 cut(s)	926
BsuRI	GGCC	2 cut(s)	465, 826
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	4 cut(s)	117, 372, 1022, 1026
BtsI	GCAGTG	2 cut(s)	876, 922
BtsIMutI	CAGTG	8 cut(s)	36, 314, 435, 440, 689, 876, 922, 1059
Cac8I	GCNNGC	2 cut(s)	351, 812
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	3 cut(s)	463, 464, 824
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	6 cut(s)	46, 100, 588, 720, 800, 841
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	4 cut(s)	28, 532, 600, 679
DpnI	GATC	2 cut(s)	923, 928
DpnII	GATC	2 cut(s)	921, 926
Ecl136II	GAGCTC	2 cut(s)	200, 733
Eco130I	CCWWGG	3 cut(s)	45, 411, 892
Eco24I	GRGCYC	5 cut(s)	29, 202, 467, 735, 1039
Eco53kI	GAGCTC	2 cut(s)	200, 733
EcoICRI	GAGCTC	2 cut(s)	200, 733
EcoO109I	RGGNCCY	3 cut(s)	463, 464, 824
EcoT14I	CCWWGG	3 cut(s)	45, 411, 892
EcoT38I	GRGCYC	5 cut(s)	29, 202, 467, 735, 1039
ErhI	CCWWGG	3 cut(s)	45, 411, 892
FaeI	CATG	6 cut(s)	49, 103, 591, 723, 803, 844
FatI	CATG	6 cut(s)	45, 99, 587, 719, 799, 840
Fnu4HI	GCNGC	5 cut(s)	42, 96, 312, 606, 765
FokI	GGATG	4 cut(s)	124, 379, 1009, 1013
FriOI	GRGCYC	5 cut(s)	29, 202, 467, 735, 1039
Fsp4HI	GCNGC	5 cut(s)	42, 96, 312, 606, 765
FspBI	CTAG	1 cut(s)	149
FspI	TGCGCA	1 cut(s)	64
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	5 cut(s)	42, 96, 312, 606, 765
HaeIII	GGCC	2 cut(s)	465, 826
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	6 cut(s)	49, 103, 591, 723, 803, 844
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	3 cut(s)	228, 670, 1019
HphI	GGTGA	3 cut(s)	288, 908, 970
Hpy166II	GTNNAC	2 cut(s)	136, 296
Hpy188I	TCNGA	4 cut(s)	526, 737, 926, 947
Hpy188III	TCNNGA	3 cut(s)	258, 364, 626
Hpy8I	GTNNAC	2 cut(s)	136, 296
HpyAV	CCTTC	3 cut(s)	245, 463, 814
HpyCH4III	ACNGT	5 cut(s)	157, 293, 613, 693, 958
HpyCH4V	TGCA	7 cut(s)	146, 213, 563, 719, 814, 869, 1009
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 605
HpyF3I	CTNAG	4 cut(s)	28, 532, 600, 679
Hsp92II	CATG	6 cut(s)	49, 103, 591, 723, 803, 844
HspAI	GCGC	1 cut(s)	63
KpnI	GGTACC	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	921, 926
LmnI	GCTCC	3 cut(s)	205, 730, 1042
Lsp1109I	GCAGC	4 cut(s)	28, 107, 323, 617
LweI	GCATC	1 cut(s)	889
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	3 cut(s)	102, 448, 1057
MalI	GATC	2 cut(s)	923, 928
MboI	GATC	2 cut(s)	921, 926
MboII	GAAGA	9 cut(s)	172, 223, 328, 545, 573, 637, 640, 641, 997
MflI	RGATCY	1 cut(s)	926
MhlI	GDGCHC	9 cut(s)	29, 202, 419, 442, 467, 531, 735, 970, 1039
MluCI	AATT	8 cut(s)	69, 208, 264, 564, 725, 738, 858, 936
MnlI	CCTC	4 cut(s)	378, 542, 668, 1050
MseI	TTAA	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	317, 605
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	2 cut(s)	921, 926
NlaIII	CATG	6 cut(s)	49, 103, 591, 723, 803, 844
NlaIV	GGNNCC	6 cut(s)	154, 418, 465, 825, 993, 1038
NmuCI	GTSAC	3 cut(s)	102, 448, 1057
NsbI	TGCGCA	1 cut(s)	64
PfeI	GAWTC	3 cut(s)	228, 670, 1019
PkrI	GCNGC	5 cut(s)	43, 97, 313, 607, 766
PshAI	GACNNNNGTC	1 cut(s)	641
Psp124BI	GAGCTC	2 cut(s)	202, 735
PspN4I	GGNNCC	6 cut(s)	154, 418, 465, 825, 993, 1038
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	3 cut(s)	463, 464, 824
PsuI	RGATCY	1 cut(s)	926
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SacI	GAGCTC	2 cut(s)	202, 735
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	5 cut(s)	42, 96, 312, 606, 765
Sau3AI	GATC	2 cut(s)	921, 926
Sau96I	GGNCC	3 cut(s)	463, 464, 824
SduI	GDGCHC	9 cut(s)	29, 202, 419, 442, 467, 531, 735, 970, 1039
SetI	ASST	9 cut(s)	154, 202, 301, 361, 378, 455, 553, 610, 735
SfaNI	GCATC	1 cut(s)	889
Sse9I	AATT	8 cut(s)	69, 208, 264, 564, 725, 738, 858, 936
SsiI	CCGC	3 cut(s)	396, 764, 787
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	2 cut(s)	202, 735
StyI	CCWWGG	3 cut(s)	45, 411, 892
TaaI	ACNGT	5 cut(s)	157, 293, 613, 693, 958
TaqI	TCGA	1 cut(s)	57
TasI	AATT	8 cut(s)	69, 208, 264, 564, 725, 738, 858, 936
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	3 cut(s)	228, 670, 1019
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	8 cut(s)	36, 321, 435, 447, 696, 876, 922, 1066
TseFI	GTSAC	3 cut(s)	102, 448, 1057
TseI	GCWGC	4 cut(s)	41, 95, 311, 605
Tsp45I	GTSAC	3 cut(s)	102, 448, 1057
TspDTI	ATGAA	5 cut(s)	118, 166, 573, 788, 1017
TspRI	CASTG	8 cut(s)	36, 321, 435, 447, 696, 876, 922, 1066
XapI	RAATTY	1 cut(s)	264
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.