pycom04g21260

UDP-arabinopyranose mutase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0008599
Physical Location & Seq
Reverse (-)
22510940 .. 22511998
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21260.1

Sequence Viewer

Length: 1059 bp
ATGTCTGACACAAGCATCAACCCCAGTGAGGTTGACATCGTGGTTGCAGCAATCAACTCTGACCTGACTCCATTCTTGAATGAATGGAGACCAATATTCTCCCCGTTCCATCTGATTATTGTCAAGGACCCTGATATGGATGGGGAGCTCCATGTTCCAGAAGGATTTAACGTGGATGTCTTTACCAAATCTGACATAAATCGGATGGTGGGCTCTTCTCATTCCATTCTCTTCTCTGGTTACTCATGCAGGTATTTTGGTTACCTGGTCTCAAGGAAAAAATATATTATCTCAATTGATGATGACTGCATCCCGGCTAAGGACAACAATGGTCATATAGTAGATGTAGTGGCACAGCATATTACCAATCTCAAAGCTCCAGCTACCCCATTCTTTTTTAACACACTCTATGATCGATCGTATCGGAAGGGAGCAGATTTTGTTCGTGGTTACCCATTTAGCCTGAGGAGTGGGGTTACATGTGCGCTATCATGTGGACTGTGGCTCAATTTGGCAGACTATGATGCACCAACACAGGCCCTCAAGCCAGAGCAGAGGAATTCTCGATATGTGGATGCTGTAATGACTGTTCCGGTGAGATCTTTAATGCCTGTAAGTGGAATAAACATTGCTTTTGATCGTGAGGTGGTAGGGCCAGCTTTGTTCCCGGCTTTGAGGTTGTCAGCGGAAGGAAAGATCAGGTGGGAGACAGTGGAAGATATATGGTCTGGAATGTGTGTAAAGGTCATATGCGATCACCTGGGAATTGGCGTAAAAACTGGGATACCTTATGTATGGAGAAAGGAAAGAGGTGATGCCATTGAAAGCTTGAAGAAAGAGTGGGAGGGTGTGAAGCTGATGGAGGAAGTGGTTCCTTTCTTTCAGTCAGTTAGGTTGCCACGATCAGCCGTGACAGCAGAAGACTGTGTTGTCGACATGGCAAGGGCGGTGAAGGAGCAGTTGGGAAAGGTAGATCCTATGTTTGCTCGTGCAGGTGATGCCATGGCGGATTGGGTGAAGCTCTGGAAGTCGGTGGGATCCAGCGCACCGGAAGTTTAA

Protein Analysis

353

Amino Acids

39.26

Weight (kDa)

5.62

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 7 - 346 1.8e-183 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 983
AasI GACNNNNNNGTC 1 cut(s) 929
Acc36I ACCTGC 2 cut(s) 240, 983
AccI GTMKAC 1 cut(s) 933
AciI CCGC 3 cut(s) 686, 947, 1007
AclWI GGATC 3 cut(s) 968, 1032, 1045
AcsI RAATTY 1 cut(s) 559
AfiI CCNNNNNNNGG 4 cut(s) 28, 136, 319, 617
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 3 cut(s) 79, 824, 832
AjnI CCWGG 2 cut(s) 264, 759
AjuI GAANNNNNNNTTGG 2 cut(s) 944, 976
AluBI AGCT 7 cut(s) 148, 377, 383, 659, 828, 856, 1021
AluI AGCT 7 cut(s) 148, 377, 383, 659, 828, 856, 1021
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 3 cut(s) 82, 274, 701
AlwI GGATC 3 cut(s) 968, 1032, 1045
AoxI GGCC 2 cut(s) 537, 653
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 559
Asp700I GAANNNNTTC 1 cut(s) 870
AspLEI GCGC 2 cut(s) 487, 1046
AspS9I GGNCC 3 cut(s) 127, 538, 653
AsuC2I CCSGG 2 cut(s) 314, 668
AsuHPI GGTGA 6 cut(s) 607, 749, 824, 961, 1007, 1027
AvaII GGWCC 1 cut(s) 127
AxyI CCTNAGG 1 cut(s) 464
BamHI GGATCC 1 cut(s) 1037
BanII GRGCYC 2 cut(s) 150, 215
BauI CACGAG 1 cut(s) 987
BbsI GAAGAC 1 cut(s) 927
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 59
BccI CCATC 4 cut(s) 117, 134, 199, 853
BceAI ACGGC 1 cut(s) 893
BciT130I CCWGG 2 cut(s) 266, 761
BciVI GTATCC 1 cut(s) 777
BcnI CCSGG 2 cut(s) 314, 668
BcoDI GTCTC 3 cut(s) 82, 274, 701
BfuAI ACCTGC 2 cut(s) 240, 983
BfuI GTATCC 1 cut(s) 777
BglII AGATCT 1 cut(s) 599
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 4 cut(s) 266, 314, 668, 761
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 3 cut(s) 127, 538, 653
BmiI GGNNCC 3 cut(s) 129, 873, 1039
BmrFI CCNGG 4 cut(s) 266, 314, 668, 761
BmrI ACTGGG 2 cut(s) 18, 789
BmsI GCATC 6 cut(s) 24, 318, 514, 565, 805, 988
BmuI ACTGGG 2 cut(s) 18, 789
BpiI GAAGAC 1 cut(s) 927
BplI GAGNNNNNCTC 2 cut(s) 547, 579
BpmI CTGGAG 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 2 cut(s) 256, 527
BpuMI CCSGG 2 cut(s) 314, 668
Bsa29I ATCGAT 1 cut(s) 415
BsaI GGTCTC 2 cut(s) 82, 274
BsaJI CCNNGG 2 cut(s) 760, 1002
BsaWI WCCGGW 2 cut(s) 592, 1048
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 136, 319, 617
Bse1I ACTGG 2 cut(s) 24, 784
Bse21I CCTNAGG 1 cut(s) 464
Bse3DI GCAATG 1 cut(s) 627
BseBI CCWGG 2 cut(s) 266, 761
BseCI ATCGAT 1 cut(s) 415
BseDI CCNNGG 2 cut(s) 760, 1002
BseGI GGATG 5 cut(s) 145, 181, 210, 309, 580
BseLI CCNNNNNNNGG 4 cut(s) 28, 136, 319, 617
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 2 cut(s) 24, 784
BseRI GAGGAG 1 cut(s) 481
BseXI GCAGC 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 1011
Bsh1285I CGRYCG 1 cut(s) 419
BshFI GGCC 2 cut(s) 539, 655
BshVI ATCGAT 1 cut(s) 415
BsiEI CGRYCG 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 4 cut(s) 314, 593, 668, 1049
BslI CCNNNNNNNGG 4 cut(s) 28, 136, 319, 617
BsmAI GTCTC 3 cut(s) 82, 274, 701
BsnI GGCC 2 cut(s) 539, 655
Bso31I GGTCTC 2 cut(s) 82, 274
Bsp1286I GDGCHC 2 cut(s) 150, 215
Bsp143I GATC 9 cut(s) 412, 416, 599, 637, 696, 754, 902, 973, 1037
Bsp19I CCATGG 1 cut(s) 1002
BspACI CCGC 3 cut(s) 686, 947, 1007
BspANI GGCC 2 cut(s) 539, 655
BspCNI CTCAG 1 cut(s) 456
BspDI ATCGAT 1 cut(s) 415
BspLI GGNNCC 3 cut(s) 129, 873, 1039
BspMI ACCTGC 2 cut(s) 240, 983
BspPI GGATC 3 cut(s) 968, 1032, 1045
BspQI GCTCTTC 1 cut(s) 220
BspTNI GGTCTC 2 cut(s) 82, 274
BsrDI GCAATG 1 cut(s) 627
BsrI ACTGG 2 cut(s) 24, 784
BssECI CCNNGG 2 cut(s) 760, 1002
BssMI GATC 9 cut(s) 412, 416, 599, 637, 696, 754, 902, 973, 1037
BssSI CACGAG 1 cut(s) 987
BssT1I CCWWGG 1 cut(s) 1002
Bst2BI CACGAG 1 cut(s) 987
Bst2UI CCWGG 2 cut(s) 266, 761
Bst4CI ACNGT 4 cut(s) 501, 589, 712, 926
Bst6I CTCTTC 2 cut(s) 220, 236
BstAPI GCANNNNNTGC 1 cut(s) 998
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 2 cut(s) 318, 464
BstDSI CCRYGG 1 cut(s) 1002
BstEII GGTNACC 2 cut(s) 260, 449
BstF5I GGATG 5 cut(s) 145, 181, 210, 309, 580
BstHHI GCGC 2 cut(s) 487, 1046
BstKTI GATC 9 cut(s) 415, 419, 602, 640, 699, 757, 905, 976, 1040
BstMAI GTCTC 3 cut(s) 82, 274, 701
BstMBI GATC 9 cut(s) 412, 416, 599, 637, 696, 754, 902, 973, 1037
BstMCI CGRYCG 1 cut(s) 419
BstMWI GCNNNNNNNGC 2 cut(s) 914, 998
BstNI CCWGG 2 cut(s) 266, 761
BstNSI RCATGY 1 cut(s) 483
BstPI GGTNACC 2 cut(s) 260, 449
BstSCI CCNGG 4 cut(s) 264, 312, 666, 759
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 927
BstX2I RGATCY 3 cut(s) 599, 973, 1037
BstYI RGATCY 3 cut(s) 599, 973, 1037
Bsu15I ATCGAT 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 464
BsuI GTATCC 1 cut(s) 777
BsuRI GGCC 2 cut(s) 539, 655
BsuTUI ATCGAT 1 cut(s) 415
BtgI CCRYGG 1 cut(s) 1002
BtsCI GGATG 5 cut(s) 145, 181, 210, 309, 580
BtsIMutI CAGTG 2 cut(s) 31, 717
BveI ACCTGC 2 cut(s) 240, 983
Cac8I GCNNGC 1 cut(s) 657
CfoI GCGC 2 cut(s) 487, 1046
Cfr13I GGNCC 3 cut(s) 127, 538, 653
ClaI ATCGAT 1 cut(s) 415
CsiI ACCWGGT 1 cut(s) 264
CviAII CATG 6 cut(s) 152, 246, 480, 492, 937, 1003
DdeI CTNAG 2 cut(s) 318, 464
DpnI GATC 9 cut(s) 414, 418, 601, 639, 698, 756, 904, 975, 1039
DpnII GATC 9 cut(s) 412, 416, 599, 637, 696, 754, 902, 973, 1037
DrdI GACNNNNNNGTC 1 cut(s) 929
DseDI GACNNNNNNGTC 1 cut(s) 929
Eam1104I CTCTTC 2 cut(s) 220, 236
EarI CTCTTC 2 cut(s) 220, 236
EciI GGCGGA 1 cut(s) 1022
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 1002
Eco24I GRGCYC 2 cut(s) 150, 215
Eco31I GGTCTC 2 cut(s) 82, 274
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 464
Eco91I GGTNACC 2 cut(s) 260, 449
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 2 cut(s) 127, 538
EcoO65I GGTNACC 2 cut(s) 260, 449
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 2 cut(s) 264, 759
EcoT14I CCWWGG 1 cut(s) 1002
EcoT38I GRGCYC 2 cut(s) 150, 215
ErhI CCWWGG 1 cut(s) 1002
FaeI CATG 6 cut(s) 155, 249, 483, 495, 940, 1006
FatI CATG 6 cut(s) 151, 245, 479, 491, 936, 1002
FauNDI CATATG 1 cut(s) 749
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 5 cut(s) 152, 188, 217, 296, 587
FriOI GRGCYC 2 cut(s) 150, 215
Fsp4HI GCNGC 1 cut(s) 48
GlaI GCGC 2 cut(s) 486, 1045
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 2 cut(s) 539, 655
HapII CCGG 4 cut(s) 314, 593, 668, 1049
HhaI GCGC 2 cut(s) 487, 1046
Hin1II CATG 6 cut(s) 155, 249, 483, 495, 940, 1006
Hin6I GCGC 2 cut(s) 485, 1044
HinP1I GCGC 2 cut(s) 485, 1044
HincII GTYRAC 2 cut(s) 34, 934
HindII GTYRAC 2 cut(s) 34, 934
HindIII AAGCTT 1 cut(s) 826
HinfI GANTC 1 cut(s) 67
HpaII CCGG 4 cut(s) 314, 593, 668, 1049
HphI GGTGA 6 cut(s) 607, 749, 824, 961, 1007, 1027
Hpy166II GTNNAC 3 cut(s) 34, 497, 934
Hpy188I TCNGA 6 cut(s) 7, 61, 114, 193, 204, 426
Hpy188III TCNNGA 6 cut(s) 76, 158, 564, 641, 729, 1024
Hpy8I GTNNAC 3 cut(s) 34, 497, 934
HpyAV CCTTC 4 cut(s) 155, 421, 683, 946
HpyCH4III ACNGT 4 cut(s) 501, 589, 712, 926
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 5 cut(s) 47, 249, 309, 527, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 914, 998
HpyF3I CTNAG 2 cut(s) 318, 464
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 6 cut(s) 155, 249, 483, 495, 940, 1006
HspAI GCGC 2 cut(s) 485, 1044
Kzo9I GATC 9 cut(s) 412, 416, 599, 637, 696, 754, 902, 973, 1037
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 5 cut(s) 145, 153, 382, 431, 955
Lsp1109I GCAGC 1 cut(s) 59
LweI GCATC 6 cut(s) 24, 318, 514, 565, 805, 988
MabI ACCWGGT 1 cut(s) 264
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 5 cut(s) 239, 260, 449, 475, 910
MalI GATC 9 cut(s) 414, 418, 601, 639, 698, 756, 904, 975, 1039
MboI GATC 9 cut(s) 412, 416, 599, 637, 696, 754, 902, 973, 1037
MboII GAAGA 5 cut(s) 207, 223, 728, 844, 932
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 3 cut(s) 599, 973, 1037
MhlI GDGCHC 2 cut(s) 150, 215
MluCI AATT 4 cut(s) 294, 508, 559, 765
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 9 cut(s) 22, 459, 549, 551, 637, 669, 803, 838, 856
MroXI GAANNNNTTC 1 cut(s) 870
MseI TTAA 4 cut(s) 168, 399, 605, 1057
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 4 cut(s) 314, 593, 668, 1049
MspR9I CCNGG 4 cut(s) 266, 314, 668, 761
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 2 cut(s) 266, 761
MwoI GCNNNNNNNGC 2 cut(s) 914, 998
NciI CCSGG 2 cut(s) 314, 668
NcoI CCATGG 1 cut(s) 1002
NdeI CATATG 1 cut(s) 749
NdeII GATC 9 cut(s) 412, 416, 599, 637, 696, 754, 902, 973, 1037
NlaIII CATG 6 cut(s) 155, 249, 483, 495, 940, 1006
NlaIV GGNNCC 3 cut(s) 129, 873, 1039
NmuCI GTSAC 1 cut(s) 910
NspI RCATGY 1 cut(s) 483
PaqCI CACCTGC 1 cut(s) 983
PciI ACATGT 1 cut(s) 479
PciSI GCTCTTC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 870
PkrI GCNGC 1 cut(s) 49
Ple19I CGATCG 1 cut(s) 419
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PpuMI RGGWCCY 1 cut(s) 127
PscI ACATGT 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 264, 759
PspEI GGTNACC 2 cut(s) 260, 449
PspGI CCWGG 2 cut(s) 264, 759
PspN4I GGNNCC 3 cut(s) 129, 873, 1039
PspPI GGNCC 3 cut(s) 127, 538, 653
PspPPI RGGWCCY 1 cut(s) 127
PsrI GAACNNNNNNTAC 2 cut(s) 573, 605
PsuI RGATCY 3 cut(s) 599, 973, 1037
PvuI CGATCG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 150
SalI GTCGAC 1 cut(s) 932
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 4 cut(s) 168, 399, 605, 1057
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 9 cut(s) 412, 416, 599, 637, 696, 754, 902, 973, 1037
Sau96I GGNCC 3 cut(s) 127, 538, 653
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 4 cut(s) 266, 314, 668, 761
SduI GDGCHC 2 cut(s) 150, 215
SexAI ACCWGGT 1 cut(s) 264
SfaNI GCATC 6 cut(s) 24, 318, 514, 565, 805, 988
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 2 cut(s) 271, 542
SmoI CTYRAG 2 cut(s) 271, 542
Sse9I AATT 4 cut(s) 294, 508, 559, 765
SsiI CCGC 3 cut(s) 686, 947, 1007
SspI AATATT 1 cut(s) 96
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 264, 312, 666, 759
StyI CCWWGG 1 cut(s) 1002
TaaI ACNGT 4 cut(s) 501, 589, 712, 926
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 415, 565, 933
TasI AATT 4 cut(s) 294, 508, 559, 765
Tru1I TTAA 4 cut(s) 168, 399, 605, 1057
Tru9I TTAA 4 cut(s) 168, 399, 605, 1057
TscAI CASTG 2 cut(s) 31, 717
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 1 cut(s) 96
TspRI CASTG 2 cut(s) 31, 717
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 559
XceI RCATGY 1 cut(s) 483
XmiI GTMKAC 1 cut(s) 933
XmnI GAANNNNTTC 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.