Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005582.1

Orthogroup ID

OG0008599

Physical Location & Seq

Genomic Coordinates Forward (+)

45755 .. 46696

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005582.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgtctaacgcaaccatagacgatagtgaggttgacattgtgattgcagcaatcagcccggacctgaaatcattcttgaatgaatggagaccaattatctcccagtttcatctgattattgtcaaagaccctgatatgaaacaggaactccaaattccagaaggatttaatgcagatgtctttaccaaagctgacataacccgcaaggtggggtcttccacctccattgtcttctcaggttactcgtgcaggtacttcggttatctagtatcacggaaaaaatatatcatctcaattgatgatgactgcaccccggctagggacagcaatggtgatttagtagatgttgttgctcagcatattgccaaccttaaaactccagcaacccctttcttttttaacacactctatgatcctttccgtaagggagcagattttgttcgcggttacccattcagcctgcggagtggggttacatgcgggctatcctgtggactgtggctcaatttggctgaccttgatgcaccaactcaggccctcaagccagagcagaggaattctcgatacgtggatgctgtaatgactgtcccagtgagagccttgctgcctgtaagtggagtcaacattgcttttgatcgtgaggtggttgggccagctttgttcccggctttgaggttggcaggtgaaggaaagtttaggtgggagacgatggaagatatatggtgcggaatgtgtgtaaaggttgtatgtgatcacctggggcttggtgtcaaaactgggatgccttatgtatggagaaaagaccgaggtgatgccgttcaaagcttgaagaaagagtgggagggggtgaagctgatggaggaagtggtccctttctttcagtcggttaggttgccacaatcttctgctgtaactgctgatcgtggcaacctaaccgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009225 GO:0009506 GO:0009628 GO:0009651 GO:0009832 GO:0009987 GO:0012505 GO:0016853 GO:0016866 GO:0030054 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0052691 GO:0055044 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

313

Amino Acids

34.83

Weight (kDa)

5.55

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16510 AT5G16510
fragaria_vesca	FvH4_6g00840 FvH4_6g00840
malus_domestica	MD04G1240800.v1.1 MD12G1257700.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1
pyrus_communis	pycom04g21260 pycom12g23650
rosa_chinensis	RchiOBHm_Chr3g0448321
rosa_laevigata	RLG00000025928
rosa_multiflora	Rmu_sc0005582.1_g000007 Rmu_sc0015167.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426460
rosa_rugosa	Rorug02G0610200 Rorug02G0610300 Rorug02G0610400 Rorug02G0610500
rosa_samantha	Rh3AG010000 Rh3BG009600 Rh3CG009500 Rh3DG010100
rosa_wichuraiana	Rw3G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	671
Acc36I	ACCTGC	2 cut(s)	240, 671
AccII	CGCG	1 cut(s)	444
AciI	CCGC	5 cut(s)	202, 444, 463, 480, 726
AclWI	GGATC	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	153, 556
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	208, 318, 319, 614
AgsI	TTSAA	3 cut(s)	79, 821, 829
AjnI	CCWGG	1 cut(s)	756
AluBI	AGCT	4 cut(s)	191, 656, 825, 853
AluI	AGCT	4 cut(s)	191, 656, 825, 853
Alw26I	GTCTC	2 cut(s)	82, 698
AlwI	GGATC	1 cut(s)	407
AoxI	GGCC	2 cut(s)	534, 650
ApeKI	GCWGC	2 cut(s)	47, 604
ApoI	RAATTY	2 cut(s)	153, 556
Asp700I	GAANNNNTTC	1 cut(s)	71
AspS9I	GGNCC	4 cut(s)	61, 535, 650, 868
AsuC2I	CCSGG	3 cut(s)	59, 314, 665
AsuHPI	GGTGA	5 cut(s)	344, 695, 746, 821, 859
AvaII	GGWCC	2 cut(s)	61, 868
BaeI	ACNNNNGTAYC	2 cut(s)	244, 277
BauI	CACGAG	1 cut(s)	244
BbsI	GAAGAC	2 cut(s)	207, 223
BbvI	GCAGC	2 cut(s)	59, 591
BccI	CCATC	2 cut(s)	703, 850
BceAI	ACGGC	1 cut(s)	800
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	1 cut(s)	758
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	3 cut(s)	59, 314, 665
BcoDI	GTCTC	2 cut(s)	82, 698
BfaI	CTAG	2 cut(s)	266, 318
BfuAI	ACCTGC	2 cut(s)	240, 671
BisI	GCNGC	2 cut(s)	48, 605
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	2 cut(s)	49, 606
Bme1390I	CCNGG	4 cut(s)	59, 314, 665, 758
Bme18I	GGWCC	2 cut(s)	61, 868
BmgT120I	GGNCC	4 cut(s)	61, 535, 650, 868
BmiI	GGNNCC	1 cut(s)	870
BmrFI	CCNGG	4 cut(s)	59, 314, 665, 758
BmrI	ACTGGG	3 cut(s)	97, 584, 786
BmsI	GCATC	4 cut(s)	511, 562, 771, 802
BmuI	ACTGGG	3 cut(s)	97, 584, 786
BpiI	GAAGAC	2 cut(s)	207, 223
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpmI	CTGGAG	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	3 cut(s)	59, 314, 665
BsaAI	YACGTR	1 cut(s)	568
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	312, 757, 805
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 318, 319, 614
Bse1I	ACTGG	3 cut(s)	103, 590, 781
Bse3DI	GCAATG	2 cut(s)	334, 624
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	3 cut(s)	312, 757, 805
BseGI	GGATG	2 cut(s)	577, 786
BseLI	CCNNNNNNNGG	4 cut(s)	208, 318, 319, 614
BseMI	GCAATG	2 cut(s)	334, 624
BseMII	CTCAG	3 cut(s)	249, 368, 545
BseNI	ACTGG	3 cut(s)	103, 590, 781
BseXI	GCAGC	2 cut(s)	59, 591
BsgI	GTGCAG	2 cut(s)	268, 292
Bsh1236I	CGCG	1 cut(s)	444
BshFI	GGCC	2 cut(s)	536, 652
BsiSI	CCGG	3 cut(s)	59, 314, 665
BslFI	GGGAC	3 cut(s)	335, 572, 854
BslI	CCNNNNNNNGG	4 cut(s)	208, 318, 319, 614
BsmAI	GTCTC	2 cut(s)	82, 698
BsmBI	CGTCTC	1 cut(s)	698
BsmFI	GGGAC	3 cut(s)	335, 572, 854
BsnI	GGCC	2 cut(s)	536, 652
Bso31I	GGTCTC	1 cut(s)	82
Bsp143I	GATC	4 cut(s)	412, 634, 751, 919
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	5 cut(s)	202, 444, 463, 480, 726
BspANI	GGCC	2 cut(s)	536, 652
BspCNI	CTCAG	3 cut(s)	248, 367, 544
BspFNI	CGCG	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	870
BspMI	ACCTGC	2 cut(s)	240, 671
BspPI	GGATC	1 cut(s)	407
BspTNI	GGTCTC	1 cut(s)	82
BsrDI	GCAATG	2 cut(s)	334, 624
BsrI	ACTGG	3 cut(s)	103, 590, 781
BssECI	CCNNGG	3 cut(s)	312, 757, 805
BssMI	GATC	4 cut(s)	412, 634, 751, 919
BssSI	CACGAG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	2 cut(s)	498, 586
BstBAI	YACGTR	1 cut(s)	568
BstC8I	GCNNGC	3 cut(s)	461, 482, 654
BstDEI	CTNAG	3 cut(s)	235, 354, 531
BstEII	GGTNACC	1 cut(s)	446
BstF5I	GGATG	2 cut(s)	577, 786
BstFNI	CGCG	1 cut(s)	444
BstKTI	GATC	4 cut(s)	415, 637, 754, 922
BstMAI	GTCTC	2 cut(s)	82, 698
BstMBI	GATC	4 cut(s)	412, 634, 751, 919
BstMWI	GCNNNNNNNGC	1 cut(s)	914
BstNI	CCWGG	1 cut(s)	758
BstNSI	RCATGY	1 cut(s)	480
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	4 cut(s)	57, 312, 663, 756
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	59, 591
BstV2I	GAAGAC	2 cut(s)	207, 223
BsuRI	GGCC	2 cut(s)	536, 652
BtsCI	GGATG	2 cut(s)	577, 786
BtsIMutI	CAGTG	1 cut(s)	597
BveI	ACCTGC	2 cut(s)	240, 671
Cac8I	GCNNGC	3 cut(s)	461, 482, 654
Cfr13I	GGNCC	4 cut(s)	61, 535, 650, 868
Csp6I	GTAC	1 cut(s)	253
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	1 cut(s)	477
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	3 cut(s)	235, 354, 531
DpnI	GATC	4 cut(s)	414, 636, 753, 921
DpnII	GATC	4 cut(s)	412, 634, 751, 919
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	61, 868
Eco91I	GGTNACC	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	756
Esp3I	CGTCTC	1 cut(s)	698
FaeI	CATG	1 cut(s)	480
FaqI	GGGAC	3 cut(s)	335, 572, 854
FatI	CATG	1 cut(s)	476
FauI	CCCGC	2 cut(s)	209, 473
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	2 cut(s)	48, 605
FokI	GGATG	2 cut(s)	584, 793
Fsp4HI	GCNGC	2 cut(s)	48, 605
FspBI	CTAG	2 cut(s)	266, 318
GluI	GCNGC	2 cut(s)	48, 605
GsuI	CTGGAG	1 cut(s)	363
HaeIII	GGCC	2 cut(s)	536, 652
HapII	CCGG	3 cut(s)	59, 314, 665
Hin1II	CATG	1 cut(s)	480
HincII	GTYRAC	2 cut(s)	34, 622
HindII	GTYRAC	2 cut(s)	34, 622
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	1 cut(s)	618
HpaII	CCGG	3 cut(s)	59, 314, 665
HphI	GGTGA	5 cut(s)	344, 695, 746, 821, 859
Hpy166II	GTNNAC	3 cut(s)	34, 494, 622
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	4 cut(s)	76, 158, 561, 638
Hpy8I	GTNNAC	3 cut(s)	34, 494, 622
HpyAV	CCTTC	2 cut(s)	155, 680
HpyCH4III	ACNGT	2 cut(s)	498, 586
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	5 cut(s)	47, 173, 249, 309, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	914
HpyF3I	CTNAG	3 cut(s)	235, 354, 531
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	1 cut(s)	480
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	4 cut(s)	412, 634, 751, 919
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	2 cut(s)	59, 591
LweI	GCATC	4 cut(s)	511, 562, 771, 802
MaeI	CTAG	2 cut(s)	266, 318
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	4 cut(s)	239, 446, 472, 910
MalI	GATC	4 cut(s)	414, 636, 753, 921
MboI	GATC	4 cut(s)	412, 634, 751, 919
MboII	GAAGA	5 cut(s)	207, 223, 725, 841, 894
MfeI	CAATTG	1 cut(s)	294
MluCI	AATT	5 cut(s)	93, 153, 294, 505, 556
MlyI	GAGTC	1 cut(s)	627
MnlI	CCTC	9 cut(s)	22, 232, 546, 548, 634, 666, 800, 835, 853
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	168, 372, 399
MspI	CCGG	3 cut(s)	59, 314, 665
MspR9I	CCNGG	4 cut(s)	59, 314, 665, 758
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	758
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	914
NciI	CCSGG	3 cut(s)	59, 314, 665
NdeII	GATC	4 cut(s)	412, 634, 751, 919
NlaIII	CATG	1 cut(s)	480
NlaIV	GGNNCC	1 cut(s)	870
NspI	RCATGY	1 cut(s)	480
PaqCI	CACCTGC	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	49, 606
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
Ppu21I	YACGTR	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	756
PspEI	GGTNACC	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	1 cut(s)	870
PspPI	GGNCC	4 cut(s)	61, 535, 650, 868
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	3 cut(s)	168, 372, 399
SatI	GCNGC	2 cut(s)	48, 605
Sau3AI	GATC	4 cut(s)	412, 634, 751, 919
Sau96I	GGNCC	4 cut(s)	61, 535, 650, 868
SchI	GAGTC	1 cut(s)	627
ScrFI	CCNGG	4 cut(s)	59, 314, 665, 758
SfaNI	GCATC	4 cut(s)	511, 562, 771, 802
SinI	GGWCC	2 cut(s)	61, 868
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	5 cut(s)	93, 153, 294, 505, 556
SsiI	CCGC	5 cut(s)	202, 444, 463, 480, 726
SspMI	CTAG	2 cut(s)	266, 318
StyD4I	CCNGG	4 cut(s)	57, 312, 663, 756
TaaI	ACNGT	2 cut(s)	498, 586
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	1 cut(s)	562
TaqII	GACCGA	1 cut(s)	819
TasI	AATT	5 cut(s)	93, 153, 294, 505, 556
Tru1I	TTAA	3 cut(s)	168, 372, 399
Tru9I	TTAA	3 cut(s)	168, 372, 399
TscAI	CASTG	1 cut(s)	597
TseI	GCWGC	2 cut(s)	47, 604
TspDTI	ATGAA	3 cut(s)	96, 98, 152
TspGWI	ACGGA	2 cut(s)	289, 410
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	2 cut(s)	61, 868
XapI	RAATTY	2 cut(s)	153, 556
XceI	RCATGY	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	2 cut(s)	266, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.