Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008599

Physical Location & Seq

Genomic Coordinates Forward (+)

481387 .. 484559

Gene Structure 3173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCTAACACAACCATCAATGACAGTGATGTTGACATTGTGGTTGCGGCAATCAACCCAGACCTGAAATCATTCTTGGATGAATGGAGACCTTTTATCTCCCAGTTTCATCTGATTATTGTCAAAGACCCTGATATGAAGCAGGAACTCCAGATTCCAGAAGGATTTAATGCAAATGTCTATACCAAAGCTGACATAACCCGCATGGTGGGTTCTACCACCTCCATTGCCTTCTCAGGTTACTCATGTAGGTACTTTGGTTATCTGGTATCACGGAAAAAATATATTATCTCAATTGATGATGACTGCACCCCGGCTAGGGACAGCAATGGTGATTTAGTAGATGTTGTTGCGCAGCACATTACCAACCTTAAAACACCAGCAACCCCTTTCTTTTTTAACACACTCTATGATCCGTTCCGGAAGGGAGCAGATTTTGTTCGCGGTTACCCATTTAGCCTGCGAAGTGGGGTTACATGCGCGCTATCCTGTGGACTGTGGCTCAATTTGGCAGACCTTGATGCGCCAACTCAGGCCCTCAAGCCAGAACAGAGGAACTCTCGATATGTGGATGCTGTTTTGACTGTTCCTGTGAGAGCCTTGCTGCCTGTAAGTGGAATCAACATTGCTTTTGATCGTGAGGTGGTTGGGCCAGCGTTGTTCCCAGCTTTGAGGTTGGCAGGAGAGGGGAAATTTAGGTGGGAGACGATGGAAGATATATGGTGTGGAATGTGTGTAAAGGTTATATGTGATCACCTGGGGCTTGGTGTAAAGACTGGGATGCCTTATGTATGGAGAAAAGAACGAGGTGATGCAGTTCAAAGCTTGAAGAAAGAGTGGGAAGGGGTGAAGCTGATGGAGGAAGTGGTCCCTTTCTTTCAGTCAGTTAGGTTGCCACGATCAGCAGTTACTGCAGAAGATTGTGTTGTCAGTATGGCAAAAACAGTTAAGGAGGAGCTGGGAAAGGTGGATCCTATGTTTGCTCGTGCATCAGATGCCATGGAGGCGTGGGTGAAGCTCTGGAAGTCAGTGGGATCATCATCATCTGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009225 GO:0009506 GO:0009628 GO:0009651 GO:0009832 GO:0009987 GO:0012505 GO:0016853 GO:0016866 GO:0030054 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0052691 GO:0055044 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

352

Amino Acids

39.04

Weight (kDa)

5.78

Isoelectric Point (pI)

35.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RGP	PF03214	6 - 345	2.3e-186	Reversibly glycosylated polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16510 AT5G16510
fragaria_vesca	FvH4_6g00840 FvH4_6g00840
malus_domestica	MD04G1240800.v1.1 MD12G1257700.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1
pyrus_communis	pycom04g21260 pycom12g23650
rosa_chinensis	RchiOBHm_Chr3g0448321
rosa_laevigata	RLG00000025928
rosa_multiflora	Rmu_sc0005582.1_g000007 Rmu_sc0015167.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426460
rosa_rugosa	Rorug02G0610200 Rorug02G0610300 Rorug02G0610400 Rorug02G0610500
rosa_samantha	Rh3AG010000 Rh3BG009600 Rh3CG009500 Rh3DG010100
rosa_wichuraiana	Rw3G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	354
AccII	CGCG	2 cut(s)	444, 482
AccIII	TCCGGA	1 cut(s)	420
AciI	CCGC	3 cut(s)	47, 202, 444
AclWI	GGATC	4 cut(s)	407, 965, 978, 1042
AcsI	RAATTY	1 cut(s)	692
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	208, 318, 319, 614
AgsI	TTSAA	2 cut(s)	821, 829
AjnI	CCWGG	1 cut(s)	756
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	7 cut(s)	191, 668, 825, 853, 958, 1018, 1052
AluI	AGCT	7 cut(s)	191, 668, 825, 853, 958, 1018, 1052
Alw26I	GTCTC	2 cut(s)	82, 698
AlwI	GGATC	4 cut(s)	407, 965, 978, 1042
AlwNI	CAGNNNCTG	1 cut(s)	911
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	2 cut(s)	534, 650
ApeKI	GCWGC	2 cut(s)	355, 604
ApoI	RAATTY	1 cut(s)	692
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	4 cut(s)	355, 482, 484, 526
AspS9I	GGNCC	3 cut(s)	535, 650, 868
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	5 cut(s)	344, 746, 821, 859, 1024
AvaII	GGWCC	1 cut(s)	868
BaeI	ACNNNNGTAYC	2 cut(s)	244, 277
BamHI	GGATCC	1 cut(s)	970
BarI	GAAGNNNNNNTAC	2 cut(s)	457, 489
BauI	CACGAG	1 cut(s)	984
BbvI	GCAGC	2 cut(s)	367, 591
BccI	CCATC	3 cut(s)	23, 703, 850
BciT130I	CCWGG	1 cut(s)	758
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	2 cut(s)	82, 698
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	912
BglI	GCCNNNNNGGC	1 cut(s)	1004
BisI	GCNGC	3 cut(s)	48, 356, 605
BlsI	GCNGC	3 cut(s)	49, 357, 606
Bme1390I	CCNGG	2 cut(s)	314, 758
Bme18I	GGWCC	1 cut(s)	868
BmgT120I	GGNCC	3 cut(s)	535, 650, 868
BmiI	GGNNCC	2 cut(s)	870, 972
BmrFI	CCNGG	2 cut(s)	314, 758
BmrI	ACTGGG	2 cut(s)	97, 786
BmsI	GCATC	6 cut(s)	511, 562, 771, 802, 985, 998
BmuI	ACTGGG	2 cut(s)	97, 786
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	314
BsaBI	GATNNNNATC	1 cut(s)	1039
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	312, 757, 999
BsaWI	WCCGGW	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 318, 319, 614
Bse1I	ACTGG	2 cut(s)	103, 781
Bse3DI	GCAATG	3 cut(s)	225, 334, 624
Bse8I	GATNNNNATC	1 cut(s)	1039
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	3 cut(s)	312, 757, 999
BseGI	GGATG	3 cut(s)	85, 577, 786
BseJI	GATNNNNATC	1 cut(s)	1039
BseLI	CCNNNNNNNGG	4 cut(s)	208, 318, 319, 614
BseMI	GCAATG	3 cut(s)	225, 334, 624
BseMII	CTCAG	2 cut(s)	249, 545
BseNI	ACTGG	2 cut(s)	103, 781
BsePI	GCGCGC	1 cut(s)	480
BseRI	GAGGAG	1 cut(s)	968
BseXI	GCAGC	2 cut(s)	367, 591
BseYI	CCCAGC	2 cut(s)	664, 958
BsgI	GTGCAG	1 cut(s)	292
Bsh1236I	CGCG	2 cut(s)	444, 482
BshFI	GGCC	2 cut(s)	536, 652
BsiSI	CCGG	2 cut(s)	314, 421
BslFI	GGGAC	2 cut(s)	335, 854
BslI	CCNNNNNNNGG	4 cut(s)	208, 318, 319, 614
BsmAI	GTCTC	2 cut(s)	82, 698
BsmBI	CGTCTC	1 cut(s)	698
BsmFI	GGGAC	2 cut(s)	335, 854
BsnI	GGCC	2 cut(s)	536, 652
Bso31I	GGTCTC	1 cut(s)	82
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	6 cut(s)	412, 634, 751, 899, 970, 1034
Bsp19I	CCATGG	1 cut(s)	999
BspACI	CCGC	3 cut(s)	47, 202, 444
BspANI	GGCC	2 cut(s)	536, 652
BspCNI	CTCAG	2 cut(s)	248, 544
BspEI	TCCGGA	1 cut(s)	420
BspFNI	CGCG	2 cut(s)	444, 482
BspLI	GGNNCC	2 cut(s)	870, 972
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	4 cut(s)	407, 965, 978, 1042
BspTNI	GGTCTC	1 cut(s)	82
BsrDI	GCAATG	3 cut(s)	225, 334, 624
BsrI	ACTGG	2 cut(s)	103, 781
BssECI	CCNNGG	3 cut(s)	312, 757, 999
BssHII	GCGCGC	1 cut(s)	480
BssMI	GATC	6 cut(s)	412, 634, 751, 899, 970, 1034
BssSI	CACGAG	1 cut(s)	984
BssT1I	CCWWGG	1 cut(s)	999
Bst2BI	CACGAG	1 cut(s)	984
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	4 cut(s)	26, 498, 586, 946
BstAPI	GCANNNNNTGC	2 cut(s)	911, 995
BstC8I	GCNNGC	3 cut(s)	461, 482, 654
BstDEI	CTNAG	2 cut(s)	235, 531
BstDSI	CCRYGG	1 cut(s)	999
BstEII	GGTNACC	1 cut(s)	446
BstF5I	GGATG	3 cut(s)	85, 577, 786
BstFNI	CGCG	2 cut(s)	444, 482
BstHHI	GCGC	4 cut(s)	355, 482, 484, 526
BstKTI	GATC	6 cut(s)	415, 637, 754, 902, 973, 1037
BstMAI	GTCTC	2 cut(s)	82, 698
BstMBI	GATC	6 cut(s)	412, 634, 751, 899, 970, 1034
BstMWI	GCNNNNNNNGC	3 cut(s)	911, 995, 1004
BstNI	CCWGG	1 cut(s)	758
BstNSI	RCATGY	1 cut(s)	480
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	312, 756
BstSFI	CTRYAG	1 cut(s)	912
BstUI	CGCG	2 cut(s)	444, 482
BstV1I	GCAGC	2 cut(s)	367, 591
BstX2I	RGATCY	1 cut(s)	970
BstYI	RGATCY	1 cut(s)	970
BsuRI	GGCC	2 cut(s)	536, 652
BtgI	CCRYGG	1 cut(s)	999
BtsCI	GGATG	3 cut(s)	85, 577, 786
BtsIMutI	CAGTG	2 cut(s)	31, 1035
Cac8I	GCNNGC	3 cut(s)	461, 482, 654
CaiI	CAGNNNCTG	1 cut(s)	911
CfoI	GCGC	4 cut(s)	355, 482, 484, 526
Cfr13I	GGNCC	3 cut(s)	535, 650, 868
Csp6I	GTAC	1 cut(s)	253
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	4 cut(s)	205, 246, 477, 1000
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	235, 531
DpnI	GATC	6 cut(s)	414, 636, 753, 901, 972, 1036
DpnII	GATC	6 cut(s)	412, 634, 751, 899, 970, 1034
Eco130I	CCWWGG	1 cut(s)	999
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	868
Eco91I	GGTNACC	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	756
EcoT14I	CCWWGG	1 cut(s)	999
ErhI	CCWWGG	1 cut(s)	999
Esp3I	CGTCTC	1 cut(s)	698
FaeI	CATG	4 cut(s)	208, 249, 480, 1003
FaqI	GGGAC	2 cut(s)	335, 854
FatI	CATG	4 cut(s)	204, 245, 476, 999
FauI	CCCGC	1 cut(s)	209
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	3 cut(s)	48, 356, 605
FokI	GGATG	3 cut(s)	92, 584, 793
Fsp4HI	GCNGC	3 cut(s)	48, 356, 605
FspBI	CTAG	1 cut(s)	318
FspI	TGCGCA	1 cut(s)	354
GlaI	GCGC	4 cut(s)	354, 481, 483, 525
GluI	GCNGC	3 cut(s)	48, 356, 605
GsaI	CCCAGC	2 cut(s)	668, 962
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	536, 652
HapII	CCGG	2 cut(s)	314, 421
HhaI	GCGC	4 cut(s)	355, 482, 484, 526
Hin1II	CATG	4 cut(s)	208, 249, 480, 1003
Hin6I	GCGC	4 cut(s)	353, 480, 482, 524
HinP1I	GCGC	4 cut(s)	353, 480, 482, 524
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	823
HinfI	GANTC	2 cut(s)	154, 618
HpaII	CCGG	2 cut(s)	314, 421
HphI	GGTGA	5 cut(s)	344, 746, 821, 859, 1024
Hpy166II	GTNNAC	2 cut(s)	34, 494
Hpy188I	TCNGA	2 cut(s)	114, 994
Hpy188III	TCNNGA	7 cut(s)	151, 158, 421, 561, 638, 1021, 1047
Hpy8I	GTNNAC	2 cut(s)	34, 494
HpyAV	CCTTC	4 cut(s)	155, 241, 418, 836
HpyCH4III	ACNGT	4 cut(s)	26, 498, 586, 946
HpyCH4V	TGCA	5 cut(s)	173, 309, 815, 914, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	911, 995, 1004
HpyF3I	CTNAG	2 cut(s)	235, 531
Hsp92II	CATG	4 cut(s)	208, 249, 480, 1003
HspAI	GCGC	4 cut(s)	353, 480, 482, 524
Kpn2I	TCCGGA	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	6 cut(s)	412, 634, 751, 899, 970, 1034
LmnI	GCTCC	3 cut(s)	428, 955, 1049
Lsp1109I	GCAGC	2 cut(s)	367, 591
LweI	GCATC	6 cut(s)	511, 562, 771, 802, 985, 998
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	4 cut(s)	239, 446, 472, 907
MalI	GATC	6 cut(s)	414, 636, 753, 901, 972, 1036
MboI	GATC	6 cut(s)	412, 634, 751, 899, 970, 1034
MboII	GAAGA	3 cut(s)	725, 841, 929
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	970
MluCI	AATT	3 cut(s)	294, 505, 692
MroI	TCCGGA	1 cut(s)	420
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	5 cut(s)	168, 372, 399, 948, 1054
MspI	CCGG	2 cut(s)	314, 421
MspR9I	CCNGG	2 cut(s)	314, 758
MunI	CAATTG	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	758
MvnI	CGCG	2 cut(s)	444, 482
MwoI	GCNNNNNNNGC	3 cut(s)	911, 995, 1004
NciI	CCSGG	1 cut(s)	314
NcoI	CCATGG	1 cut(s)	999
NdeII	GATC	6 cut(s)	412, 634, 751, 899, 970, 1034
NlaIII	CATG	4 cut(s)	208, 249, 480, 1003
NlaIV	GGNNCC	2 cut(s)	870, 972
NsbI	TGCGCA	1 cut(s)	354
NspI	RCATGY	1 cut(s)	480
PauI	GCGCGC	1 cut(s)	480
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	154, 618
PkrI	GCNGC	3 cut(s)	49, 357, 606
Psp6I	CCWGG	1 cut(s)	756
PspEI	GGTNACC	1 cut(s)	446
PspFI	CCCAGC	2 cut(s)	664, 958
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	2 cut(s)	870, 972
PspPI	GGNCC	3 cut(s)	535, 650, 868
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	911
PsuI	RGATCY	1 cut(s)	970
PteI	GCGCGC	1 cut(s)	480
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	5 cut(s)	168, 372, 399, 948, 1054
SatI	GCNGC	3 cut(s)	48, 356, 605
Sau3AI	GATC	6 cut(s)	412, 634, 751, 899, 970, 1034
Sau96I	GGNCC	3 cut(s)	535, 650, 868
ScrFI	CCNGG	2 cut(s)	314, 758
SfaNI	GCATC	6 cut(s)	511, 562, 771, 802, 985, 998
SfcI	CTRYAG	1 cut(s)	912
SinI	GGWCC	1 cut(s)	868
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	3 cut(s)	294, 505, 692
SsiI	CCGC	3 cut(s)	47, 202, 444
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	312, 756
StyI	CCWWGG	1 cut(s)	999
TaaI	ACNGT	4 cut(s)	26, 498, 586, 946
TaqI	TCGA	1 cut(s)	562
TasI	AATT	3 cut(s)	294, 505, 692
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	154, 618
Tru1I	TTAA	5 cut(s)	168, 372, 399, 948, 1054
Tru9I	TTAA	5 cut(s)	168, 372, 399, 948, 1054
TscAI	CASTG	2 cut(s)	31, 1035
TseI	GCWGC	2 cut(s)	355, 604
TspDTI	ATGAA	3 cut(s)	96, 98, 152
TspGWI	ACGGA	2 cut(s)	289, 405
TspRI	CASTG	2 cut(s)	31, 1035
VpaK11BI	GGWCC	1 cut(s)	868
XapI	RAATTY	1 cut(s)	692
XceI	RCATGY	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.