MD04G1240800.v1.1

UDP-arabinopyranose mutase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0008599
Physical Location & Seq
Reverse (-)
31820294 .. 31821571
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1240800.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGTCTGACACAAGCATCAACCCTAGTGAGGTTGACATCGTGGTTGCGGCAATCAACTCCGACCTGACTCCATTCTTGAATGAATGGAGACCAATATTCTCCCCGTTCCATCTGATTATTGTCAAAGACCCTGATATGGATGGGGAGCTCCATGTTCCAGAAGGATTTAACGTGGATGTCTTTACCAAATCTGACATAAACCGGATGGTGGGCTCTTCTCATTCCATTCTCTTCTCTGGTTACTCATGCAGGTATTTTGGTTATCTGGTCTCAAGGAAAAAATATATTATCTCAATTGATGATGACTGCATCCCGGCTAAGGACAACAATGGTCATATAGTAGATGTAGTTGCACAGCATATTGCTAATCTCAAAGCTCCAGCTACCCCATTCTTTTTTAACACACTCTATGATCCGTATCGGAAGGGAGCAGATTTTGTTCGTGGTTACCCATTTAGCCTGAGGAGTGGGGTTACATGTGCGCTATCATGTGGACTGTGGCTCAATTTGGCAGACTATGATGCACCAACACAGGCCCTCAAGCCAGAGCAGAGGAATTCTCGATATGTGGATGCTGTAATGACTGTTCCGGTGAGATCTTTAATGCCTGTAAGTGGAATAAACATTGCTTTTGATCGTGAGGTGGTGGGGCCAGCTTTGTTCCCGGCTTTGAGGTTGTCAGCGGAAGGAAAGATCAGGTGGGAGACCGTGGAAGATCTATGGTCTGGAATGTGTGTAAAGGTCATATGCGATCACCTGGGAATTGGCATAAAAACTGGGATACCTTATGTATGGAGAAAGGAAAGAGGTGATGCCATTGAAAGCTTGAAGAAAGAGTGGGAGGGTGTGAAGCTGATGGAGGAAGTGGTTCCTTTCTTTCAGTCAGTTAGGTTGCCACGATCAGCGGTCACTGCAGAAGACTGTGTTGTCGACATGGCAAAGGCGGTGAAGGAGCAGTTGGGAAAGGTAGATCCTATGTTTGCTCGTGCAGGTGATGCCATGGCGGATTGGGTGAAGCTCTGGAAGTCGGTGGGATCCAGTGCACCGGAAGTTTAA

Protein Analysis

352

Amino Acids

39.07

Weight (kDa)

5.49

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 7 - 345 3.2e-186 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 980
AasI GACNNNNNNGTC 1 cut(s) 926
Acc36I ACCTGC 2 cut(s) 240, 980
AccI GTMKAC 1 cut(s) 930
AciI CCGC 5 cut(s) 47, 683, 905, 944, 1004
AclWI GGATC 4 cut(s) 407, 965, 1029, 1042
AcsI RAATTY 1 cut(s) 556
AfiI CCNNNNNNNGG 5 cut(s) 28, 136, 208, 319, 614
AflIII ACRYGT 1 cut(s) 476
AgsI TTSAA 3 cut(s) 79, 821, 829
AjnI CCWGG 1 cut(s) 756
AjuI GAANNNNNNNTTGG 2 cut(s) 941, 973
AluBI AGCT 7 cut(s) 148, 377, 383, 656, 825, 853, 1018
AluI AGCT 7 cut(s) 148, 377, 383, 656, 825, 853, 1018
Alw21I GWGCWC 2 cut(s) 150, 1045
Alw26I GTCTC 3 cut(s) 82, 274, 698
Alw44I GTGCAC 1 cut(s) 1041
AlwI GGATC 4 cut(s) 407, 965, 1029, 1042
AoxI GGCC 2 cut(s) 534, 650
ApaLI GTGCAC 1 cut(s) 1041
ApoI RAATTY 1 cut(s) 556
Asp700I GAANNNNTTC 1 cut(s) 867
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 2 cut(s) 535, 650
AsuC2I CCSGG 2 cut(s) 314, 665
AsuHPI GGTGA 6 cut(s) 604, 746, 821, 958, 1004, 1024
AxyI CCTNAGG 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 1045
BamHI GGATCC 1 cut(s) 1034
BanII GRGCYC 2 cut(s) 150, 215
BauI CACGAG 1 cut(s) 984
BbsI GAAGAC 1 cut(s) 924
Bbv12I GWGCWC 2 cut(s) 150, 1045
BccI CCATC 4 cut(s) 117, 134, 199, 850
BciT130I CCWGG 1 cut(s) 758
BciVI GTATCC 1 cut(s) 774
BcnI CCSGG 2 cut(s) 314, 665
BcoDI GTCTC 3 cut(s) 82, 274, 698
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 912
BfuAI ACCTGC 2 cut(s) 240, 980
BfuI GTATCC 1 cut(s) 774
BglII AGATCT 2 cut(s) 596, 715
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 3 cut(s) 314, 665, 758
BmgT120I GGNCC 2 cut(s) 535, 650
BmiI GGNNCC 3 cut(s) 651, 870, 1036
BmrFI CCNGG 3 cut(s) 314, 665, 758
BmrI ACTGGG 1 cut(s) 786
BmsI GCATC 6 cut(s) 24, 318, 511, 562, 802, 985
BmuI ACTGGG 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 924
BplI GAGNNNNNCTC 2 cut(s) 544, 576
BpmI CTGGAG 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 2 cut(s) 256, 524
BpuMI CCSGG 2 cut(s) 314, 665
BsaBI GATNNNNATC 1 cut(s) 417
BsaI GGTCTC 3 cut(s) 82, 274, 698
BsaJI CCNNGG 3 cut(s) 708, 757, 999
BsaWI WCCGGW 3 cut(s) 201, 589, 1045
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 136, 208, 319, 614
Bse1I ACTGG 2 cut(s) 781, 1038
Bse21I CCTNAGG 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 624
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 758
BseDI CCNNGG 3 cut(s) 708, 757, 999
BseGI GGATG 5 cut(s) 145, 181, 210, 309, 577
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 5 cut(s) 28, 136, 208, 319, 614
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 2 cut(s) 781, 1038
BseRI GAGGAG 1 cut(s) 478
BseSI GKGCMC 1 cut(s) 1045
BsgI GTGCAG 1 cut(s) 1008
BshFI GGCC 2 cut(s) 536, 652
BsiHKAI GWGCWC 2 cut(s) 150, 1045
BsiSI CCGG 5 cut(s) 202, 314, 590, 665, 1046
BslI CCNNNNNNNGG 5 cut(s) 28, 136, 208, 319, 614
BsmAI GTCTC 3 cut(s) 82, 274, 698
BsnI GGCC 2 cut(s) 536, 652
Bso31I GGTCTC 3 cut(s) 82, 274, 698
Bsp1286I GDGCHC 3 cut(s) 150, 215, 1045
Bsp143I GATC 9 cut(s) 412, 596, 634, 693, 715, 751, 899, 970, 1034
Bsp19I CCATGG 1 cut(s) 999
BspACI CCGC 5 cut(s) 47, 683, 905, 944, 1004
BspANI GGCC 2 cut(s) 536, 652
BspCNI CTCAG 1 cut(s) 453
BspLI GGNNCC 3 cut(s) 651, 870, 1036
BspMAI CTGCAG 1 cut(s) 916
BspMI ACCTGC 2 cut(s) 240, 980
BspPI GGATC 4 cut(s) 407, 965, 1029, 1042
BspQI GCTCTTC 1 cut(s) 220
BspTNI GGTCTC 3 cut(s) 82, 274, 698
BsrDI GCAATG 1 cut(s) 624
BsrI ACTGG 2 cut(s) 781, 1038
BssECI CCNNGG 3 cut(s) 708, 757, 999
BssMI GATC 9 cut(s) 412, 596, 634, 693, 715, 751, 899, 970, 1034
BssSI CACGAG 1 cut(s) 984
BssT1I CCWWGG 1 cut(s) 999
Bst2BI CACGAG 1 cut(s) 984
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 4 cut(s) 498, 586, 709, 923
Bst6I CTCTTC 2 cut(s) 220, 236
BstAPI GCANNNNNTGC 1 cut(s) 995
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 2 cut(s) 318, 461
BstDSI CCRYGG 2 cut(s) 708, 999
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 5 cut(s) 145, 181, 210, 309, 577
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 9 cut(s) 415, 599, 637, 696, 718, 754, 902, 973, 1037
BstMAI GTCTC 3 cut(s) 82, 274, 698
BstMBI GATC 9 cut(s) 412, 596, 634, 693, 715, 751, 899, 970, 1034
BstMWI GCNNNNNNNGC 2 cut(s) 911, 995
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 1 cut(s) 480
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 312, 663, 756
BstSFI CTRYAG 1 cut(s) 912
BstSLI GKGCMC 1 cut(s) 1045
BstV2I GAAGAC 1 cut(s) 924
BstX2I RGATCY 4 cut(s) 596, 715, 970, 1034
BstYI RGATCY 4 cut(s) 596, 715, 970, 1034
Bsu36I CCTNAGG 1 cut(s) 461
BsuI GTATCC 1 cut(s) 774
BsuRI GGCC 2 cut(s) 536, 652
BtgI CCRYGG 2 cut(s) 708, 999
BtsCI GGATG 5 cut(s) 145, 181, 210, 309, 577
BtsI GCAGTG 1 cut(s) 909
BtsIMutI CAGTG 2 cut(s) 909, 1045
BveI ACCTGC 2 cut(s) 240, 980
Cac8I GCNNGC 1 cut(s) 654
CfoI GCGC 1 cut(s) 484
Cfr13I GGNCC 2 cut(s) 535, 650
CviAII CATG 6 cut(s) 152, 246, 477, 489, 934, 1000
DdeI CTNAG 2 cut(s) 318, 461
DpnI GATC 9 cut(s) 414, 598, 636, 695, 717, 753, 901, 972, 1036
DpnII GATC 9 cut(s) 412, 596, 634, 693, 715, 751, 899, 970, 1034
DrdI GACNNNNNNGTC 1 cut(s) 926
DseDI GACNNNNNNGTC 1 cut(s) 926
Eam1104I CTCTTC 2 cut(s) 220, 236
EarI CTCTTC 2 cut(s) 220, 236
EciI GGCGGA 1 cut(s) 1019
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 999
Eco24I GRGCYC 2 cut(s) 150, 215
Eco31I GGTCTC 3 cut(s) 82, 274, 698
Eco53kI GAGCTC 1 cut(s) 148
Eco81I CCTNAGG 1 cut(s) 461
Eco91I GGTNACC 1 cut(s) 446
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 535
EcoO65I GGTNACC 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 756
EcoT14I CCWWGG 1 cut(s) 999
EcoT38I GRGCYC 2 cut(s) 150, 215
ErhI CCWWGG 1 cut(s) 999
FaeI CATG 6 cut(s) 155, 249, 480, 492, 937, 1003
FatI CATG 6 cut(s) 151, 245, 476, 488, 933, 999
FauNDI CATATG 1 cut(s) 746
FblI GTMKAC 1 cut(s) 930
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 5 cut(s) 152, 188, 217, 296, 584
FriOI GRGCYC 2 cut(s) 150, 215
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 483
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 2 cut(s) 536, 652
HapII CCGG 5 cut(s) 202, 314, 590, 665, 1046
HhaI GCGC 1 cut(s) 484
Hin1II CATG 6 cut(s) 155, 249, 480, 492, 937, 1003
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HincII GTYRAC 2 cut(s) 34, 931
HindII GTYRAC 2 cut(s) 34, 931
HindIII AAGCTT 1 cut(s) 823
HinfI GANTC 1 cut(s) 67
HpaII CCGG 5 cut(s) 202, 314, 590, 665, 1046
HphI GGTGA 6 cut(s) 604, 746, 821, 958, 1004, 1024
Hpy166II GTNNAC 4 cut(s) 34, 494, 931, 1043
Hpy188I TCNGA 5 cut(s) 7, 61, 114, 193, 423
Hpy188III TCNNGA 6 cut(s) 76, 158, 561, 638, 726, 1021
Hpy8I GTNNAC 4 cut(s) 34, 494, 931, 1043
HpyAV CCTTC 4 cut(s) 155, 418, 680, 943
HpyCH4III ACNGT 4 cut(s) 498, 586, 709, 923
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 7 cut(s) 249, 309, 353, 524, 914, 989, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 911, 995
HpyF3I CTNAG 2 cut(s) 318, 461
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 6 cut(s) 155, 249, 480, 492, 937, 1003
HspAI GCGC 1 cut(s) 482
Kzo9I GATC 9 cut(s) 412, 596, 634, 693, 715, 751, 899, 970, 1034
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 5 cut(s) 145, 153, 382, 428, 952
LweI GCATC 6 cut(s) 24, 318, 511, 562, 802, 985
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 4 cut(s) 239, 446, 472, 907
MalI GATC 9 cut(s) 414, 598, 636, 695, 717, 753, 901, 972, 1036
MboI GATC 9 cut(s) 412, 596, 634, 693, 715, 751, 899, 970, 1034
MboII GAAGA 5 cut(s) 207, 223, 725, 841, 929
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 4 cut(s) 596, 715, 970, 1034
MhlI GDGCHC 3 cut(s) 150, 215, 1045
MluCI AATT 4 cut(s) 294, 505, 556, 762
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 9 cut(s) 22, 456, 546, 548, 634, 666, 800, 835, 853
MroXI GAANNNNTTC 1 cut(s) 867
MseI TTAA 4 cut(s) 168, 399, 602, 1054
MspA1I CMGCKG 2 cut(s) 683, 905
MspI CCGG 5 cut(s) 202, 314, 590, 665, 1046
MspR9I CCNGG 3 cut(s) 314, 665, 758
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 758
MwoI GCNNNNNNNGC 2 cut(s) 911, 995
NciI CCSGG 2 cut(s) 314, 665
NcoI CCATGG 1 cut(s) 999
NdeI CATATG 1 cut(s) 746
NdeII GATC 9 cut(s) 412, 596, 634, 693, 715, 751, 899, 970, 1034
NlaIII CATG 6 cut(s) 155, 249, 480, 492, 937, 1003
NlaIV GGNNCC 3 cut(s) 651, 870, 1036
NmuCI GTSAC 1 cut(s) 907
NspI RCATGY 1 cut(s) 480
PaqCI CACCTGC 1 cut(s) 980
PciI ACATGT 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 867
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PscI ACATGT 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 756
PspEI GGTNACC 1 cut(s) 446
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 3 cut(s) 651, 870, 1036
PspPI GGNCC 2 cut(s) 535, 650
PsrI GAACNNNNNNTAC 2 cut(s) 570, 602
PstI CTGCAG 1 cut(s) 916
PsuI RGATCY 4 cut(s) 596, 715, 970, 1034
SacI GAGCTC 1 cut(s) 150
SalI GTCGAC 1 cut(s) 929
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 4 cut(s) 168, 399, 602, 1054
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 9 cut(s) 412, 596, 634, 693, 715, 751, 899, 970, 1034
Sau96I GGNCC 2 cut(s) 535, 650
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 3 cut(s) 314, 665, 758
SduI GDGCHC 3 cut(s) 150, 215, 1045
SfaNI GCATC 6 cut(s) 24, 318, 511, 562, 802, 985
SfcI CTRYAG 1 cut(s) 912
SmlI CTYRAG 2 cut(s) 271, 539
SmoI CTYRAG 2 cut(s) 271, 539
Sse9I AATT 4 cut(s) 294, 505, 556, 762
SsiI CCGC 5 cut(s) 47, 683, 905, 944, 1004
SspI AATATT 1 cut(s) 96
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 312, 663, 756
StyI CCWWGG 1 cut(s) 999
TaaI ACNGT 4 cut(s) 498, 586, 709, 923
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 562, 930
TasI AATT 4 cut(s) 294, 505, 556, 762
TauI GCSGC 1 cut(s) 50
Tru1I TTAA 4 cut(s) 168, 399, 602, 1054
Tru9I TTAA 4 cut(s) 168, 399, 602, 1054
TscAI CASTG 2 cut(s) 916, 1045
TseFI GTSAC 1 cut(s) 907
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 2 cut(s) 916, 1045
VneI GTGCAC 1 cut(s) 1041
XapI RAATTY 1 cut(s) 556
XceI RCATGY 1 cut(s) 480
XmiI GTMKAC 1 cut(s) 930
XmnI GAANNNNTTC 1 cut(s) 867
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.