Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008599

Physical Location & Seq

Genomic Coordinates Reverse (-)

72709789 .. 72711077

Gene Structure 1289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0610500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCATCAACTACAGCTCACCAACACTTGCTTCAGCAATGGGAAATCTTATACCGATCTTTACATTCATACTGGCGATCACTTTCAGGTAGGAAGGATGGAAAAGATGGATTTGAGGAGGTCAAGCACTCAATCTGTCAAGCCAAAGTGTTGGGGACTATTCTCTCAGTATCTGGAGCATTTGTAGTAGTTCTATACAAGGGATCAGTAATCTTTTCACCATCCAACTCTCCTGACCAGAACTTCATGATGATCCCGCAGCAGTCAAAGTGGGTCTTCGGAGGTCTTATGCTTGCAATGGCCAGCGTTTTCACCACATCATGGAGCATTCTTCAGGCTGTATTTGGGAGTGTGTTCCATGTTGGTGTTGAAACCTGGTGCTTTTCCCAAAAGGGACCTATCTTTGAAGCCATGTTCAGGCCCTTGGGAGTTGCCATTGCTGCAGTCATGGTAGTCATCTTCCTCGGCGAAGCACTTCACCTTGGCAGTGTGATTGGATCTATCATTATTGCAATTGGGTTTTATGCTATGATATGGGCACAAATCAAAGAAAATAGCACCAAAGGTACAGCAAATGAAGTCCAAAGCTTGGCATCATCCACTCAAAAGACCCCTCTTTTGCATGGAGAGGATTGTATGCACCGACAGTGTAAGTGCACTGTCAGTTATTTTAATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009225 GO:0009506 GO:0009628 GO:0009651 GO:0009832 GO:0009987 GO:0012505 GO:0016853 GO:0016866 GO:0030054 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0052691 GO:0055044 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

226

Amino Acids

24.9

Weight (kDa)

8.6

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16510 AT5G16510
fragaria_vesca	FvH4_6g00840 FvH4_6g00840
malus_domestica	MD04G1240800.v1.1 MD12G1257700.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1
pyrus_communis	pycom04g21260 pycom12g23650
rosa_chinensis	RchiOBHm_Chr3g0448321
rosa_laevigata	RLG00000025928
rosa_multiflora	Rmu_sc0005582.1_g000007 Rmu_sc0015167.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426460
rosa_rugosa	Rorug02G0610200 Rorug02G0610300 Rorug02G0610400 Rorug02G0610500
rosa_samantha	Rh3AG010000 Rh3BG009600 Rh3CG009500 Rh3DG010100
rosa_wichuraiana	Rw3G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	321, 589
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	3 cut(s)	211, 247, 505
AcoI	YGGCCR	1 cut(s)	300
AcuI	CTGAAG	2 cut(s)	17, 317
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	3 cut(s)	321, 417, 589
AgsI	TTSAA	2 cut(s)	371, 407
AjnI	CCWGG	1 cut(s)	374
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AluBI	AGCT	2 cut(s)	17, 588
AluI	AGCT	2 cut(s)	17, 588
Alw21I	GWGCWC	1 cut(s)	659
Alw44I	GTGCAC	1 cut(s)	655
AlwI	GGATC	3 cut(s)	211, 247, 505
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	300, 419
ApaLI	GTGCAC	1 cut(s)	655
ApeKI	GCWGC	2 cut(s)	259, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
Asp700I	GAANNNNTTC	1 cut(s)	474
AspS9I	GGNCC	2 cut(s)	395, 420
AsuHPI	GGTGA	4 cut(s)	11, 210, 304, 470
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	2 cut(s)	541, 659
BalI	TGGCCA	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	271, 427
BccI	CCATC	3 cut(s)	92, 101, 229
BciT130I	CCWGG	1 cut(s)	376
BfmI	CTRYAG	2 cut(s)	12, 441
BisI	GCNGC	2 cut(s)	260, 441
BlsI	GCNGC	2 cut(s)	261, 442
Bme1390I	CCNGG	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	2 cut(s)	395, 420
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	14, 602
BpiI	GAAGAC	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	423, 463, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	3 cut(s)	321, 417, 589
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	3 cut(s)	44, 303, 435
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	423, 463, 481
BseGI	GGATG	3 cut(s)	103, 221, 596
BseLI	CCNNNNNNNGG	3 cut(s)	321, 417, 589
BseMI	GCAATG	3 cut(s)	44, 303, 435
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	2 cut(s)	541, 659
BseXI	GCAGC	2 cut(s)	271, 427
BshFI	GGCC	2 cut(s)	302, 421
BsiHKAI	GWGCWC	1 cut(s)	659
BslFI	GGGAC	2 cut(s)	169, 408
BslI	CCNNNNNNNGG	3 cut(s)	321, 417, 589
BsmFI	GGGAC	2 cut(s)	169, 408
BsmI	GAATGC	1 cut(s)	327
BsnI	GGCC	2 cut(s)	302, 421
Bsp1286I	GDGCHC	2 cut(s)	541, 659
Bsp143I	GATC	5 cut(s)	56, 77, 203, 252, 497
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	302, 421
BspCNI	CTCAG	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	396
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	3 cut(s)	211, 247, 505
BsrDI	GCAATG	3 cut(s)	44, 303, 435
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	3 cut(s)	423, 463, 481
BssMI	GATC	5 cut(s)	56, 77, 203, 252, 497
BssT1I	CCWWGG	2 cut(s)	423, 481
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	648, 661
BstC8I	GCNNGC	2 cut(s)	294, 304
BstDEI	CTNAG	1 cut(s)	166
BstF5I	GGATG	3 cut(s)	103, 221, 596
BstKTI	GATC	5 cut(s)	59, 80, 206, 255, 500
BstMBI	GATC	5 cut(s)	56, 77, 203, 252, 497
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	2 cut(s)	12, 441
BstSLI	GKGCMC	2 cut(s)	541, 659
BstV1I	GCAGC	2 cut(s)	271, 427
BstV2I	GAAGAC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	497
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	302, 421
BtsCI	GGATG	3 cut(s)	103, 221, 596
BtsI	GCAGTG	1 cut(s)	493
BtsIMutI	CAGTG	3 cut(s)	493, 653, 657
Cac8I	GCNNGC	2 cut(s)	294, 304
CaiI	CAGNNNCTG	1 cut(s)	173
CciI	TCATGA	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	395, 420
CsiI	ACCWGGT	1 cut(s)	374
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	6 cut(s)	247, 321, 359, 412, 448, 623
CviJI	RGCY	7 cut(s)	17, 143, 302, 338, 410, 421, 588
CviKI_1	RGCY	7 cut(s)	17, 143, 302, 338, 410, 421, 588
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	5 cut(s)	58, 79, 205, 254, 499
DpnII	GATC	5 cut(s)	56, 77, 203, 252, 497
EaeI	YGGCCR	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	423, 481
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	2 cut(s)	17, 317
EcoO109I	RGGNCCY	2 cut(s)	395, 420
EcoRII	CCWGG	1 cut(s)	374
EcoT14I	CCWWGG	2 cut(s)	423, 481
ErhI	CCWWGG	2 cut(s)	423, 481
FaeI	CATG	6 cut(s)	250, 324, 362, 415, 451, 626
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	169, 408
FatI	CATG	6 cut(s)	246, 320, 358, 411, 447, 622
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	2 cut(s)	260, 441
FokI	GGATG	3 cut(s)	110, 208, 583
Fsp4HI	GCNGC	2 cut(s)	260, 441
GluI	GCNGC	2 cut(s)	260, 441
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	302, 421
Hin1II	CATG	6 cut(s)	250, 324, 362, 415, 451, 626
HindIII	AAGCTT	1 cut(s)	586
HphI	GGTGA	4 cut(s)	11, 210, 304, 470
Hpy166II	GTNNAC	1 cut(s)	657
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	3 cut(s)	174, 233, 247
Hpy8I	GTNNAC	1 cut(s)	657
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	648, 661
HpyCH4V	TGCA	6 cut(s)	296, 443, 512, 622, 640, 657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	1 cut(s)	166
Hsp92II	CATG	6 cut(s)	250, 324, 362, 415, 451, 626
Kzo9I	GATC	5 cut(s)	56, 77, 203, 252, 497
LmnI	GCTCC	2 cut(s)	176, 324
Lsp1109I	GCAGC	2 cut(s)	271, 427
LweI	GCATC	2 cut(s)	14, 602
MabI	ACCWGGT	1 cut(s)	374
MalI	GATC	5 cut(s)	58, 79, 205, 254, 499
MboI	GATC	5 cut(s)	56, 77, 203, 252, 497
MboII	GAAGA	3 cut(s)	268, 323, 451
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	1 cut(s)	497
MhlI	GDGCHC	2 cut(s)	541, 659
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	1 cut(s)	513
MluNI	TGGCCA	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	6 cut(s)	109, 112, 275, 473, 622, 624
Mox20I	TGGCCA	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	672
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	376
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	440
NdeII	GATC	5 cut(s)	56, 77, 203, 252, 497
NlaIII	CATG	6 cut(s)	250, 324, 362, 415, 451, 626
NlaIV	GGNNCC	1 cut(s)	396
NmeAIII	GCCGAG	1 cut(s)	444
PagI	TCATGA	1 cut(s)	246
PctI	GAATGC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	474
PflMI	CCANNNNNTGG	2 cut(s)	321, 589
PkrI	GCNGC	2 cut(s)	261, 442
PpuMI	RGGWCCY	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	2 cut(s)	395, 420
PspPPI	RGGWCCY	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	497
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	672
SatI	GCNGC	2 cut(s)	260, 441
Sau3AI	GATC	5 cut(s)	56, 77, 203, 252, 497
Sau96I	GGNCC	2 cut(s)	395, 420
ScrFI	CCNGG	1 cut(s)	376
SduI	GDGCHC	2 cut(s)	541, 659
SetI	ASST	9 cut(s)	19, 91, 123, 286, 377, 400, 483, 568, 590
SexAI	ACCWGGT	1 cut(s)	374
SfaNI	GCATC	2 cut(s)	14, 602
SfcI	CTRYAG	2 cut(s)	12, 441
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	1 cut(s)	513
SsiI	CCGC	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	374
StyI	CCWWGG	2 cut(s)	423, 481
TaaI	ACNGT	2 cut(s)	648, 661
TasI	AATT	1 cut(s)	513
Tru1I	TTAA	1 cut(s)	672
Tru9I	TTAA	1 cut(s)	672
TscAI	CASTG	3 cut(s)	493, 653, 664
TseI	GCWGC	2 cut(s)	259, 440
TspDTI	ATGAA	3 cut(s)	57, 235, 591
TspRI	CASTG	3 cut(s)	493, 653, 664
Van91I	CCANNNNNTGG	2 cut(s)	321, 589
VneI	GTGCAC	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.