Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008599

Physical Location & Seq

Genomic Coordinates Reverse (-)

72706090 .. 72707863

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0610400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGATCAGCCTTGTAAATGGGGCATACTGCTACCTTTTGCAGCCATGGTTACAGTTCAGTTTACCGATGTGGGGATATCAACTATAAGCAAAGCAGCTATGTCAAGAGGAATGAGCAGTTATGTTTTGATTGTCTACTCTAATGCCCTTGCTACCCTCCTTCTCCTTCCCTCTTTCATTTTACAAAAGAAGCAGGTTTCTCTTACCTTTTCGTTCCTTTGCGGACTCTTCCTCCTAGGCCTAATCGGGAGTTCAAGTATATTATTGTCATATAATGGCATCAACTACAGCTCACCAACACTTTCTTCAGCTATGGCAAATCTTATACCAATCTACACGTTCATGTTGGCAATCATTTTCAGGATGGAAAAACTAGATTTGAGGAGATCAAGCAGTCAAGCTAAAGTGTTGGGCACTATAGTATCAGTCTCTGGAGCATTTATAATAATCCTATATAAGGGCTTAGTAATCTTAAAGCCTTCATCACCATCCAACTTCCTCATGATCTCACATCAGTCAAACTCAAGGTGGGTCTTTGGAGGTCTTATGCTGGCAATGTCCTGCCTTTTGTCTGCAATTTGGAACATTGTTCAGGCATCCATTGTTAAAAACTGTCCATCAAAGGTGACAGTGGTCTTCTTCTACACGTTCTTTATGACAATCCAATGCACAATATTTTCTCTGATTGTGGAAAGGAATCCGAATACTTGGGTTATAAGACCTGGCATTGAGATGATCTCCATTGTCTGCTCAGCTATAATGGGGAATGTGTTCCATGTTGGTGTTCATACTTGGTGCTTGCACCAAAAGGGACCTGTCTTTGTAGCCATGTTCAGACCTTTGGGAGTTGCCATTGCAGCTGTCATGGTGGTCTTCTTCCTCGGCGATCCGCTTCATCTTGGCAGTGTGGTTGGATCTGTCATCATTGCCATTGGGTTTTATGCTATGATGTGGGCACAAATCAAAGAAAAGGGCAGTAATGTTGTGGAGAATGAAGTCCACAGCTTGGCATCAACAAACCAACACACCACCCCTCTTTTGCAATGCAGAAGCACAGAAGAAGAAAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009225 GO:0009506 GO:0009628 GO:0009651 GO:0009832 GO:0009987 GO:0012505 GO:0016853 GO:0016866 GO:0030054 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0052691 GO:0055044 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

357

Amino Acids

39.12

Weight (kDa)

9.22

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	7 - 150	3.4e-08	EamA-like transporter family
EamA	PF00892	179 - 316	1e-06	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008599)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16510 AT5G16510
fragaria_vesca	FvH4_6g00840 FvH4_6g00840
malus_domestica	MD04G1240800.v1.1 MD12G1257700.v1.1
prunus_persica	Prupe.6G358400_v2.0.a1
pyrus_communis	pycom04g21260 pycom12g23650
rosa_chinensis	RchiOBHm_Chr3g0448321
rosa_laevigata	RLG00000025928
rosa_multiflora	Rmu_sc0005582.1_g000007 Rmu_sc0015167.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426460
rosa_rugosa	Rorug02G0610200 Rorug02G0610300 Rorug02G0610400 Rorug02G0610500
rosa_samantha	Rh3AG010000 Rh3BG009600 Rh3CG009500 Rh3DG010100
rosa_wichuraiana	Rw3G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	443, 716
Acc36I	ACCTGC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	2 cut(s)	222, 890
AclWI	GGATC	3 cut(s)	12, 881, 922
AcuI	CTGAAG	1 cut(s)	291
AfiI	CCNNNNNNNGG	3 cut(s)	72, 457, 1006
AflIII	ACRYGT	2 cut(s)	336, 645
AgsI	TTSAA	1 cut(s)	255
AjnI	CCWGG	1 cut(s)	721
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	7 cut(s)	98, 291, 311, 401, 755, 860, 1005
AluI	AGCT	7 cut(s)	98, 291, 311, 401, 755, 860, 1005
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	3 cut(s)	12, 881, 922
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	3 cut(s)	41, 95, 857
Asp700I	GAANNNNTTC	1 cut(s)	770
AspA2I	CCTAGG	1 cut(s)	235
AspS9I	GGNCC	1 cut(s)	812
AsuHPI	GGTGA	3 cut(s)	285, 477, 637
AvaII	GGWCC	1 cut(s)	812
AvrII	CCTAGG	1 cut(s)	235
BaeGI	GKGCMC	2 cut(s)	416, 958
BaeI	ACNNNNGTAYC	2 cut(s)	405, 438
BbsI	GAAGAC	2 cut(s)	628, 865
BbvI	GCAGC	3 cut(s)	53, 107, 869
BccI	CCATC	3 cut(s)	358, 496, 625
BciT130I	CCWGG	1 cut(s)	723
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	2 cut(s)	236, 374
BfmI	CTRYAG	2 cut(s)	286, 417
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	42, 96, 858
BlnI	CCTAGG	1 cut(s)	235
BlpI	GCTNAGC	1 cut(s)	751
BlsI	GCNGC	3 cut(s)	43, 97, 859
Bme1390I	CCNGG	1 cut(s)	723
Bme18I	GGWCC	1 cut(s)	812
BmgT120I	GGNCC	1 cut(s)	812
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	1 cut(s)	723
BmsI	GCATC	3 cut(s)	288, 605, 1019
BoxI	GACNNNNGTC	1 cut(s)	632
BpiI	GAAGAC	2 cut(s)	628, 865
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
BpmI	CTGGAG	1 cut(s)	453
Bpu1102I	GCTNAGC	1 cut(s)	751
BpuEI	CTTGAG	1 cut(s)	508
BsaJI	CCNNGG	3 cut(s)	45, 235, 880
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 241, 246, 271
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 457, 1006
Bse3DI	GCAATG	4 cut(s)	561, 852, 924, 1049
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	3 cut(s)	45, 235, 880
BseGI	GGATG	3 cut(s)	369, 488, 596
BseLI	CCNNNNNNNGG	3 cut(s)	72, 457, 1006
BseMI	GCAATG	4 cut(s)	561, 852, 924, 1049
BseMII	CTCAG	1 cut(s)	765
BseRI	GAGGAG	1 cut(s)	397
BseSI	GKGCMC	2 cut(s)	416, 958
BseXI	GCAGC	3 cut(s)	53, 107, 869
BshFI	GGCC	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	825
BslI	CCNNNNNNNGG	3 cut(s)	72, 457, 1006
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	825
BsnI	GGCC	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	416, 958
Bsp143I	GATC	6 cut(s)	4, 386, 504, 735, 886, 914
Bsp1720I	GCTNAGC	1 cut(s)	751
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	2 cut(s)	222, 890
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	764
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	813
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	3 cut(s)	12, 881, 922
BsrDI	GCAATG	4 cut(s)	561, 852, 924, 1049
BssECI	CCNNGG	3 cut(s)	45, 235, 880
BssMI	GATC	6 cut(s)	4, 386, 504, 735, 886, 914
BssT1I	CCWWGG	2 cut(s)	45, 235
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	3 cut(s)	55, 614, 631
Bst6I	CTCTTC	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	552, 800
BstDEI	CTNAG	2 cut(s)	463, 751
BstDSI	CCRYGG	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	3 cut(s)	369, 488, 596
BstKTI	GATC	6 cut(s)	7, 389, 507, 738, 889, 917
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	6 cut(s)	4, 386, 504, 735, 886, 914
BstMWI	GCNNNNNNNGC	1 cut(s)	857
BstNI	CCWGG	1 cut(s)	723
BstPAI	GACNNNNGTC	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	721
BstSFI	CTRYAG	2 cut(s)	286, 417
BstSLI	GKGCMC	2 cut(s)	416, 958
BstV1I	GCAGC	3 cut(s)	53, 107, 869
BstV2I	GAAGAC	2 cut(s)	628, 865
BstX2I	RGATCY	1 cut(s)	914
BstYI	RGATCY	1 cut(s)	914
BsuRI	GGCC	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	3 cut(s)	369, 488, 596
BtsI	GCAGTG	1 cut(s)	910
BtsIMutI	CAGTG	2 cut(s)	636, 910
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	552, 800
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	812
CviAII	CATG	6 cut(s)	46, 343, 502, 776, 829, 865
DdeI	CTNAG	2 cut(s)	463, 751
DpnI	GATC	6 cut(s)	6, 388, 506, 737, 888, 916
DpnII	GATC	6 cut(s)	4, 386, 504, 735, 886, 914
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	2 cut(s)	45, 235
Eco147I	AGGCCT	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	812
Eco57I	CTGAAG	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	812
EcoRII	CCWGG	1 cut(s)	721
EcoRV	GATATC	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	45, 235
ErhI	CCWWGG	2 cut(s)	45, 235
FaeI	CATG	6 cut(s)	49, 346, 505, 779, 832, 868
FaqI	GGGAC	1 cut(s)	825
FatI	CATG	6 cut(s)	45, 342, 501, 775, 828, 864
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	42, 96, 858
FokI	GGATG	3 cut(s)	376, 475, 583
Fsp4HI	GCNGC	3 cut(s)	42, 96, 858
FspBI	CTAG	2 cut(s)	236, 374
GluI	GCNGC	3 cut(s)	42, 96, 858
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	49, 346, 505, 779, 832, 868
HinfI	GANTC	2 cut(s)	225, 697
HphI	GGTGA	3 cut(s)	285, 477, 637
Hpy166II	GTNNAC	3 cut(s)	63, 136, 1000
Hpy188I	TCNGA	3 cut(s)	684, 702, 836
Hpy188III	TCNNGA	5 cut(s)	105, 247, 361, 432, 502
Hpy8I	GTNNAC	3 cut(s)	63, 136, 1000
HpyAV	CCTTC	3 cut(s)	170, 176, 489
HpyCH4III	ACNGT	3 cut(s)	55, 614, 631
HpyCH4IV	ACGT	2 cut(s)	338, 647
HpyCH4V	TGCA	7 cut(s)	41, 575, 669, 802, 857, 1042, 1047
HpyF10VI	GCNNNNNNNGC	1 cut(s)	857
HpyF3I	CTNAG	2 cut(s)	463, 751
HpySE526I	ACGT	2 cut(s)	338, 647
Hsp92II	CATG	6 cut(s)	49, 346, 505, 779, 832, 868
Kzo9I	GATC	6 cut(s)	4, 386, 504, 735, 886, 914
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	9 cut(s)	179, 346, 417, 536, 574, 578, 708, 735, 828
Lsp1109I	GCAGC	3 cut(s)	53, 107, 869
LweI	GCATC	3 cut(s)	288, 605, 1019
MaeI	CTAG	2 cut(s)	236, 374
MaeII	ACGT	2 cut(s)	338, 647
MaeIII	GTNAC	2 cut(s)	49, 625
MalI	GATC	6 cut(s)	6, 388, 506, 737, 888, 916
MboI	GATC	6 cut(s)	4, 386, 504, 735, 886, 914
MboII	GAAGA	8 cut(s)	220, 297, 628, 631, 865, 868, 1070, 1073
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	2 cut(s)	416, 958
MluCI	AATT	1 cut(s)	576
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	2 cut(s)	516, 892
MnlI	CCTC	9 cut(s)	101, 167, 181, 242, 375, 509, 533, 890, 1044
MroXI	GAANNNNTTC	1 cut(s)	770
MseI	TTAA	3 cut(s)	473, 606, 1072
MslI	CAYNNNNRTG	3 cut(s)	341, 731, 780
MspA1I	CMGCKG	1 cut(s)	860
MspR9I	CCNGG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	723
MwoI	GCNNNNNNNGC	1 cut(s)	857
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	6 cut(s)	4, 386, 504, 735, 886, 914
NlaIII	CATG	6 cut(s)	49, 346, 505, 779, 832, 868
NlaIV	GGNNCC	1 cut(s)	813
NmeAIII	GCCGAG	1 cut(s)	861
NmuCI	GTSAC	1 cut(s)	625
PagI	TCATGA	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	770
PfeI	GAWTC	1 cut(s)	697
PflMI	CCANNNNNTGG	1 cut(s)	1006
PkrI	GCNGC	3 cut(s)	43, 97, 859
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	812
PshAI	GACNNNNGTC	1 cut(s)	632
PsiI	TTATAA	2 cut(s)	443, 716
Psp5II	RGGWCCY	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	1 cut(s)	812
PspPPI	RGGWCCY	1 cut(s)	812
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	914
PvuII	CAGCTG	1 cut(s)	860
RseI	CAYNNNNRTG	3 cut(s)	341, 731, 780
SaqAI	TTAA	3 cut(s)	473, 606, 1072
SatI	GCNGC	3 cut(s)	42, 96, 858
Sau3AI	GATC	6 cut(s)	4, 386, 504, 735, 886, 914
Sau96I	GGNCC	1 cut(s)	812
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	723
SduI	GDGCHC	2 cut(s)	416, 958
SfaNI	GCATC	3 cut(s)	288, 605, 1019
SfcI	CTRYAG	2 cut(s)	286, 417
SinI	GGWCC	1 cut(s)	812
SmiMI	CAYNNNNRTG	3 cut(s)	341, 731, 780
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	1 cut(s)	576
SseBI	AGGCCT	1 cut(s)	240
SsiI	CCGC	2 cut(s)	222, 890
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	2 cut(s)	236, 374
StuI	AGGCCT	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	721
StyI	CCWWGG	2 cut(s)	45, 235
TaaI	ACNGT	3 cut(s)	55, 614, 631
TaiI	ACGT	2 cut(s)	341, 650
TasI	AATT	1 cut(s)	576
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	3 cut(s)	473, 606, 1072
Tru9I	TTAA	3 cut(s)	473, 606, 1072
TscAI	CASTG	2 cut(s)	636, 910
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	3 cut(s)	41, 95, 857
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	6 cut(s)	166, 331, 471, 776, 884, 1008
TspRI	CASTG	2 cut(s)	636, 910
Van91I	CCANNNNNTGG	1 cut(s)	1006
VpaK11BI	GGWCC	1 cut(s)	812
XagI	CCTNNNNNAGG	1 cut(s)	455
XmaJI	CCTAGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	770
XspI	CTAG	2 cut(s)	236, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.