Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005892

Physical Location & Seq

Genomic Coordinates Reverse (-)

5465475 .. 5467319

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCGTCGTGTATTGCTACTGCTCCTCTTTCTCTATCTGGCGTGTCTCAATCTCATTATGTGAAAGCTAATGGATTGTCTACAACAACAAAACTCAGTTCTATTTGTAAAACCTCTGATTTGACTATTCACAAGAAATCAAACCGGACTCGCAAGTTTTCTGTTTCTGCAGGGTATCGAGATGGAAGTAGAAGCGGAAGCAGTGGTGATTTCATTGCTGGTTTTCTTCTAGGAGGTGCTGTCTTTGGCGCTGTTGCTTATATCTTTGCTCCACAGATCCGAAGATCGGTTCTAAATGAAGAAGACGAGTACGGTTTTGAGAAGCCGAAACAGCCAACGTACTACGATGAAGGTTTAGAGAAAACAAGAGAGACACTGAATGAGAAAATAGGACAACTTAATTCAGCGATAGACAATGTCTCTTCGCGTTTACGAGGTCGAGAAAAGAACACTTCTTCCCTAAATGTACCGGTCGAAACTGACCCAGAGGTTGAAGCTACGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.18

Weight (kDa)

8.52

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16660 AT5G16660
fragaria_vesca	FvH4_7g34210 FvH4_7g34210
malus_domestica	MD01G1238800.v1.1 MD07G1310700.v1.1
prunus_persica	Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1
pyrus_communis	pycom07g28300
rosa_chinensis	RchiOBHm_Chr1g0384571
rosa_laevigata	RLG00000026031
rosa_multiflora	Rmu_co8335447.1_g000001 Rmu_sc0006005.1_g000014
rosa_roxburghii	Rroxscaffold_4G00276580
rosa_rugosa	Rorug01G0449200 Rorug01G0449300
rosa_samantha	Rh1AG474100 Rh1BG432200 Rh1CG445400 Rh1DG464800
rosa_wichuraiana	Rw1G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	80
AccII	CGCG	1 cut(s)	427
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	311, 341, 468
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgeI	ACCGGT	1 cut(s)	469
AgsI	TTSAA	1 cut(s)	494
AloI	GAACNNNNNNTCC	2 cut(s)	440, 472
AluBI	AGCT	2 cut(s)	68, 497
AluI	AGCT	2 cut(s)	68, 497
Alw26I	GTCTC	3 cut(s)	51, 365, 424
AlwI	GGATC	1 cut(s)	271
AsiGI	ACCGGT	1 cut(s)	469
AspLEI	GCGC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	309
BccI	CCATC	1 cut(s)	176
BcoDI	GTCTC	3 cut(s)	51, 365, 424
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	2 cut(s)	144, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	1 cut(s)	469
Bse3DI	GCAATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	427
Bsh1285I	CGRYCG	1 cut(s)	474
BshTI	ACCGGT	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	145, 470
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	3 cut(s)	51, 365, 424
Bsp143I	GATC	2 cut(s)	276, 284
BspACI	CCGC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	469
BssAI	RCCGGY	1 cut(s)	469
BssMI	GATC	2 cut(s)	276, 284
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	95
BstFNI	CGCG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	279, 287
BstMAI	GTCTC	3 cut(s)	51, 365, 424
BstMBI	GATC	2 cut(s)	276, 284
BstMCI	CGRYCG	1 cut(s)	474
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 374
CfoI	GCGC	1 cut(s)	251
Cfr10I	RCCGGY	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	310, 340, 467
CspAI	ACCGGT	1 cut(s)	469
CviJI	RGCY	4 cut(s)	68, 325, 334, 497
CviKI_1	RGCY	4 cut(s)	68, 325, 334, 497
CviQI	GTAC	3 cut(s)	310, 340, 467
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	2 cut(s)	278, 286
DpnII	GATC	2 cut(s)	276, 284
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
FaiI	YATR	2 cut(s)	60, 261
FblI	GTMKAC	1 cut(s)	80
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	250
HaeII	RGCGCY	1 cut(s)	252
HapII	CCGG	2 cut(s)	145, 470
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	2 cut(s)	145, 470
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	81, 431
Hpy188I	TCNGA	2 cut(s)	118, 281
Hpy188III	TCNNGA	2 cut(s)	179, 440
Hpy8I	GTNNAC	2 cut(s)	81, 431
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	276, 284
LmnI	GCTCC	2 cut(s)	28, 274
LpnPI	CCDG	6 cut(s)	24, 156, 158, 204, 483, 498
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	338
MalI	GATC	2 cut(s)	278, 286
MboI	GATC	2 cut(s)	276, 284
MboII	GAAGA	6 cut(s)	218, 294, 311, 314, 414, 447
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	1 cut(s)	400
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	5 cut(s)	36, 124, 227, 428, 481
MseI	TTAA	1 cut(s)	399
MspI	CCGG	2 cut(s)	145, 470
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	331
NdeII	GATC	2 cut(s)	276, 284
PflFI	GACNNNGTC	1 cut(s)	416
PinAI	ACCGGT	1 cut(s)	469
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	276
PsyI	GACNNNGTC	1 cut(s)	416
RsaI	GTAC	3 cut(s)	311, 341, 468
RsaNI	GTAC	3 cut(s)	310, 340, 467
SaqAI	TTAA	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	276, 284
SchI	GAGTC	1 cut(s)	142
SetI	ASST	8 cut(s)	70, 116, 238, 341, 355, 439, 492, 499
SfcI	CTRYAG	1 cut(s)	168
Sse9I	AATT	1 cut(s)	400
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	178, 439, 474
TasI	AATT	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	208, 381
TspDTI	ATGAA	3 cut(s)	202, 312, 363
TspRI	CASTG	2 cut(s)	208, 381
Tth111I	GACNNNGTC	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.