Rmu_co8335447.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8335447.1
OG0005892
Physical Location & Seq
Reverse (-)
1 .. 563
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8335447.1_g000001.1.cds

Sequence Viewer

Length: 221 bp
atgcagatcagaagatccctcctcaatgaagatgaatatggatttcgtaaggccaggagaccaatatattatgacgaaggtttagagaagaccaggcagaccttgaatgcaaaaataagccagctcaattcagccattgacaatgtctcttcccgcttgagaggtgggaacaatgcgcccgcggcgccagtccaaagtgatcccgaagtagaagctaccat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.22

Weight (kDa)

8.1

Isoelectric Point (pI)

69.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AccII CGCG 1 cut(s) 182
AciI CCGC 3 cut(s) 154, 180, 182
AclWI GGATC 2 cut(s) 9, 194
AcyI GRCGYC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 2 cut(s) 53, 92
AluBI AGCT 2 cut(s) 124, 215
AluI AGCT 2 cut(s) 124, 215
Alw26I GTCTC 2 cut(s) 52, 151
AlwI GGATC 2 cut(s) 9, 194
AoxI GGCC 1 cut(s) 51
AspLEI GCGC 2 cut(s) 178, 187
BanI GGYRCC 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 55, 94
BcoDI GTCTC 2 cut(s) 52, 151
BfoI RGCGCY 1 cut(s) 188
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 55, 94
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 2 cut(s) 55, 94
BpiI GAAGAC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 2 cut(s) 55, 94
BseDI CCNNGG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 52, 151
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 52
Bsp143I GATC 3 cut(s) 6, 14, 199
BspACI CCGC 3 cut(s) 154, 180, 182
BspANI GGCC 1 cut(s) 53
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 2 cut(s) 9, 194
BspT107I GGYRCC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 3 cut(s) 6, 14, 199
BssNI GRCGYC 1 cut(s) 185
Bst2UI CCWGG 2 cut(s) 55, 94
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 122, 180
BstDSI CCRYGG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 2 cut(s) 178, 187
BstKTI GATC 3 cut(s) 9, 17, 202
BstMAI GTCTC 2 cut(s) 52, 151
BstMBI GATC 3 cut(s) 6, 14, 199
BstMWI GCNNNNNNNGC 2 cut(s) 182, 184
BstNI CCWGG 2 cut(s) 55, 94
BstSCI CCNGG 2 cut(s) 53, 92
BstUI CGCG 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 53
BtgI CCRYGG 1 cut(s) 180
Cac8I GCNNGC 2 cut(s) 122, 180
CfoI GCGC 2 cut(s) 178, 187
Cfr42I CCGCGG 1 cut(s) 183
CviJI RGCY 5 cut(s) 53, 120, 124, 134, 215
CviKI_1 RGCY 5 cut(s) 53, 120, 124, 134, 215
DinI GGCGCC 1 cut(s) 186
DpnI GATC 3 cut(s) 8, 16, 201
DpnII GATC 3 cut(s) 6, 14, 199
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 53, 92
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
FaiI YATR 3 cut(s) 39, 67, 72
FauI CCCGC 2 cut(s) 161, 187
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
GlaI GCGC 2 cut(s) 177, 186
GluI GCNGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 1 cut(s) 53
HhaI GCGC 2 cut(s) 178, 187
Hin1I GRCGYC 1 cut(s) 185
Hin6I GCGC 2 cut(s) 176, 185
HinP1I GCGC 2 cut(s) 176, 185
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 71
HpyCH4V TGCA 2 cut(s) 4, 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 184
Hsp92I GRCGYC 1 cut(s) 185
HspAI GCGC 2 cut(s) 176, 185
KasI GGCGCC 1 cut(s) 184
KspI CCGCGG 1 cut(s) 183
Kzo9I GATC 3 cut(s) 6, 14, 199
LpnPI CCDG 6 cut(s) 40, 67, 79, 106, 134, 201
MalI GATC 3 cut(s) 8, 16, 201
MboI GATC 3 cut(s) 6, 14, 199
MboII GAAGA 4 cut(s) 24, 41, 100, 141
MflI RGATCY 1 cut(s) 14
MluCI AATT 1 cut(s) 127
Mly113I GGCGCC 1 cut(s) 185
MnlI CCTC 3 cut(s) 29, 32, 155
MspA1I CMGCKG 1 cut(s) 182
MspR9I CCNGG 2 cut(s) 55, 94
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 2 cut(s) 55, 94
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 182, 184
NarI GGCGCC 1 cut(s) 185
NdeII GATC 3 cut(s) 6, 14, 199
NlaIV GGNNCC 1 cut(s) 186
PctI GAATGC 1 cut(s) 112
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 184
PluTI GGCGCC 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 53, 92
PspGI CCWGG 2 cut(s) 53, 92
PspN4I GGNNCC 1 cut(s) 186
PsuI RGATCY 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 143
SacII CCGCGG 1 cut(s) 183
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 3 cut(s) 6, 14, 199
ScrFI CCNGG 2 cut(s) 55, 94
SetI ASST 5 cut(s) 82, 104, 126, 166, 217
SfoI GGCGCC 1 cut(s) 186
Sfr303I CCGCGG 1 cut(s) 183
SgrBI CCGCGG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 1 cut(s) 127
SsiI CCGC 3 cut(s) 154, 180, 182
SspDI GGCGCC 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 53, 92
TasI AATT 1 cut(s) 127
TauI GCSGC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 42, 48
Tth111I GACNNNGTC 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.