Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005892

Physical Location & Seq

Genomic Coordinates Reverse (-)

54507675 .. 54508641

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0449300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCCGGTCAAATGTTTCGACACCGACCGTAAATGCTGGATAGCTGATTCCGGCTTCCACAGTGAGGTTTTCCCCTTTGTGGGTGAGGCTTTAGTCGTGGACTTGGATAAACCTTGCAAGGAGAAGTTGGTGTTTACCTATGATCGTGATATTATAAACGTGTGGCGATTGGGATTGACTGATGATTTGAAAGGTTCTTATCTTACCAGATACGGGTCTGTGAATATGAAACCCAGGTTGCTGGGCTTATTGGAAAATTTGCGTGAAGTATCTAAGCAGCTTCGTCTCATCGATCTAGGAGATGGAAAAATCTGCTTTGTTAGGGCCAGGAGCTACCCAGTTGAGGAACGTACTATAAATTCACTAGGGGTCGAGAAGTTTTGGAAACTGCTTGATAGAATGGCTAAAGTGTGGCCTTCTCTTTCTATGGTGATAAGTATTGAAGGGGTAGATATGATGGTTGGAGTTCCTCTGAGGAGTGGCAGTCCTGCTCTTGATGATCTTTCAGTGGATTCCCATCCATTCAGTTCTTCTAGATGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.6

Weight (kDa)

6.73

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16660 AT5G16660
fragaria_vesca	FvH4_7g34210 FvH4_7g34210
malus_domestica	MD01G1238800.v1.1 MD07G1310700.v1.1
prunus_persica	Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1
pyrus_communis	pycom07g28300
rosa_chinensis	RchiOBHm_Chr1g0384571
rosa_laevigata	RLG00000026031
rosa_multiflora	Rmu_co8335447.1_g000001 Rmu_sc0006005.1_g000014
rosa_roxburghii	Rroxscaffold_4G00276580
rosa_rugosa	Rorug01G0449200 Rorug01G0449300
rosa_samantha	Rh1AG474100 Rh1BG432200 Rh1CG445400 Rh1DG464800
rosa_wichuraiana	Rw1G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	155
AcsI	RAATTY	2 cut(s)	256, 358
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	5 cut(s)	64, 79, 80, 213, 343
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	190, 443
AjnI	CCWGG	2 cut(s)	233, 326
AluBI	AGCT	3 cut(s)	44, 280, 333
AluI	AGCT	3 cut(s)	44, 280, 333
Alw26I	GTCTC	1 cut(s)	290
AoxI	GGCC	2 cut(s)	324, 413
ApeKI	GCWGC	1 cut(s)	277
ApoI	RAATTY	2 cut(s)	256, 358
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	2 cut(s)	95, 442
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	4 cut(s)	296, 451, 525, 531
BciT130I	CCWGG	2 cut(s)	235, 328
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	3 cut(s)	296, 365, 534
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	2 cut(s)	235, 328
BmgT120I	GGNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	235, 328
BmrI	ACTGGG	1 cut(s)	332
BmuI	ACTGGG	1 cut(s)	332
Bsa29I	ATCGAT	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	5 cut(s)	64, 79, 80, 213, 343
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	235, 328
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	1 cut(s)	517
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	5 cut(s)	64, 79, 80, 213, 343
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	490
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	241
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	2 cut(s)	326, 415
BshVI	ATCGAT	1 cut(s)	291
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	5, 51
BslI	CCNNNNNNNGG	5 cut(s)	64, 79, 80, 213, 343
BsmAI	GTCTC	1 cut(s)	290
BsmBI	CGTCTC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	326, 415
Bsp143I	GATC	3 cut(s)	142, 292, 499
BspANI	GGCC	2 cut(s)	326, 415
BspCNI	CTCAG	1 cut(s)	465
BspDI	ATCGAT	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	3 cut(s)	142, 292, 499
Bst2UI	CCWGG	2 cut(s)	235, 328
Bst4CI	ACNGT	2 cut(s)	29, 62
BstDEI	CTNAG	2 cut(s)	273, 473
BstF5I	GGATG	1 cut(s)	517
BstKTI	GATC	3 cut(s)	145, 295, 502
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	3 cut(s)	142, 292, 499
BstMCI	CGRYCG	1 cut(s)	28
BstNI	CCWGG	2 cut(s)	235, 328
BstSCI	CCNGG	2 cut(s)	233, 326
BstV1I	GCAGC	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	326, 415
BsuTUI	ATCGAT	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	67, 513
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	324
ClaI	ATCGAT	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	351
CviJI	RGCY	9 cut(s)	44, 54, 89, 246, 280, 326, 333, 404, 415
CviKI_1	RGCY	9 cut(s)	44, 54, 89, 246, 280, 326, 333, 404, 415
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	273, 473
DpnI	GATC	3 cut(s)	144, 294, 501
DpnII	GATC	3 cut(s)	142, 292, 499
EcoRII	CCWGG	2 cut(s)	233, 326
Esp3I	CGTCTC	1 cut(s)	290
FaiI	YATR	6 cut(s)	141, 155, 227, 356, 428, 455
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	3 cut(s)	296, 365, 534
GluI	GCNGC	1 cut(s)	278
GsaI	CCCAGC	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	326, 415
HapII	CCGG	2 cut(s)	5, 51
HinfI	GANTC	2 cut(s)	47, 512
HpaII	CCGG	2 cut(s)	5, 51
HphI	GGTGA	2 cut(s)	95, 442
Hpy166II	GTNNAC	2 cut(s)	100, 135
Hpy188I	TCNGA	1 cut(s)	474
Hpy188III	TCNNGA	4 cut(s)	146, 373, 494, 534
Hpy8I	GTNNAC	2 cut(s)	100, 135
HpyAV	CCTTC	2 cut(s)	426, 437
HpyCH4III	ACNGT	2 cut(s)	29, 62
HpyCH4IV	ACGT	2 cut(s)	159, 349
HpyCH4V	TGCA	1 cut(s)	117
HpyF3I	CTNAG	2 cut(s)	273, 473
HpySE526I	ACGT	2 cut(s)	159, 349
Kzo9I	GATC	3 cut(s)	142, 292, 499
LmnI	GCTCC	1 cut(s)	330
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	3 cut(s)	296, 365, 534
MaeII	ACGT	2 cut(s)	159, 349
MalI	GATC	3 cut(s)	144, 294, 501
MboI	GATC	3 cut(s)	142, 292, 499
MboII	GAAGA	1 cut(s)	522
MluCI	AATT	2 cut(s)	256, 358
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	5 cut(s)	58, 79, 337, 468, 480
MspI	CCGG	2 cut(s)	5, 51
MspR9I	CCNGG	2 cut(s)	235, 328
MvaI	CCWGG	2 cut(s)	235, 328
NdeII	GATC	3 cut(s)	142, 292, 499
PfeI	GAWTC	2 cut(s)	47, 512
PkrI	GCNGC	1 cut(s)	279
PsiI	TTATAA	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	233, 326
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	233, 326
PspPI	GGNCC	1 cut(s)	324
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	3 cut(s)	142, 292, 499
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	235, 328
Sse9I	AATT	2 cut(s)	256, 358
SspMI	CTAG	3 cut(s)	296, 365, 534
StyD4I	CCNGG	2 cut(s)	233, 326
TaaI	ACNGT	2 cut(s)	29, 62
TaiI	ACGT	2 cut(s)	162, 352
TaqI	TCGA	3 cut(s)	18, 291, 372
TasI	AATT	2 cut(s)	256, 358
TfiI	GAWTC	2 cut(s)	47, 512
TscAI	CASTG	2 cut(s)	67, 513
TseI	GCWGC	1 cut(s)	277
TspDTI	ATGAA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	67, 513
XapI	RAATTY	2 cut(s)	256, 358
XbaI	TCTAGA	1 cut(s)	533
XspI	CTAG	3 cut(s)	296, 365, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.