Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005892

Physical Location & Seq

Genomic Coordinates Forward (+)

67378656 .. 67380848

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G039840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCGATCTGCTCGGCTCCTCTAACCACTTCATTCTCAGTAGGCAGCGGATCTCAGCTGAAAGCGCGTGAGATTTGGTTGTCCGGCAAGTCGGAATCAGTAAAACTCACCGCACAGAGCCAGAGCCGGAGAAACTCGGTTCAATTGCGAAACAACCGTAATTTCTGTGTTCGTGCTGAGTATAGTGATGGTAATAGAGGTGGAGGTGCTGATTTTCTTGCTGGTTTCCTGGTCGGAGGTGCTGTGTTTGGAACTTTAGCTTATGTTTTTGCTCCACAGATCAGAAGATCCCTCCTCAATGAAGATGAATATGGATTTCGTAAGGCCAGGAGACCAATATATTATGACGAAGGTTTAGAGAAGACCAGGCAGACCTTGAATGCAAAAATAAGCCAGCTCAATTCAGCCATTGACAATGTCTCTTCCCGCTTGAGAGGTGGGAACAATGCGCCCGCGGCGCCAGTCCAAAGTGATCCCGAAGTAGAAGCTACCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

17.94

Weight (kDa)

9.63

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16660 AT5G16660
fragaria_vesca	FvH4_7g34210 FvH4_7g34210
malus_domestica	MD01G1238800.v1.1 MD07G1310700.v1.1
prunus_persica	Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1
pyrus_communis	pycom07g28300
rosa_chinensis	RchiOBHm_Chr1g0384571
rosa_laevigata	RLG00000026031
rosa_multiflora	Rmu_co8335447.1_g000001 Rmu_sc0006005.1_g000014
rosa_roxburghii	Rroxscaffold_4G00276580
rosa_rugosa	Rorug01G0449200 Rorug01G0449300
rosa_samantha	Rh1AG474100 Rh1BG432200 Rh1CG445400 Rh1DG464800
rosa_wichuraiana	Rw1G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AccII	CGCG	2 cut(s)	67, 455
AciI	CCGC	5 cut(s)	48, 111, 427, 453, 455
AclWI	GGATC	3 cut(s)	58, 282, 467
AcyI	GRCGYC	1 cut(s)	458
AgsI	TTSAA	2 cut(s)	143, 379
AjnI	CCWGG	3 cut(s)	228, 326, 365
AluBI	AGCT	4 cut(s)	58, 260, 397, 488
AluI	AGCT	4 cut(s)	58, 260, 397, 488
Alw26I	GTCTC	2 cut(s)	325, 424
AlwI	GGATC	3 cut(s)	58, 282, 467
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	45
AspLEI	GCGC	3 cut(s)	67, 451, 460
AsuHPI	GGTGA	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	3 cut(s)	230, 328, 367
BcoDI	GTCTC	2 cut(s)	325, 424
BfoI	RGCGCY	1 cut(s)	461
BisI	GCNGC	2 cut(s)	46, 456
BlsI	GCNGC	2 cut(s)	47, 457
Bme1390I	CCNGG	3 cut(s)	230, 328, 367
BmiI	GGNNCC	2 cut(s)	18, 459
BmrFI	CCNGG	3 cut(s)	230, 328, 367
BpiI	GAAGAC	1 cut(s)	368
BpuEI	CTTGAG	1 cut(s)	451
BsaHI	GRCGYC	1 cut(s)	458
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bse1I	ACTGG	1 cut(s)	461
BseBI	CCWGG	3 cut(s)	230, 328, 367
BseDI	CCNNGG	1 cut(s)	453
BseMII	CTCAG	3 cut(s)	51, 68, 168
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	2 cut(s)	9, 284
BseXI	GCAGC	1 cut(s)	57
Bsh1236I	CGCG	2 cut(s)	67, 455
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	457
BsiSI	CCGG	2 cut(s)	84, 127
BsmAI	GTCTC	2 cut(s)	325, 424
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	325
Bsp143I	GATC	5 cut(s)	6, 50, 279, 287, 472
BspACI	CCGC	5 cut(s)	48, 111, 427, 453, 455
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	3 cut(s)	50, 67, 169
BspFNI	CGCG	2 cut(s)	67, 455
BspLI	GGNNCC	2 cut(s)	18, 459
BspPI	GGATC	3 cut(s)	58, 282, 467
BspT107I	GGYRCC	1 cut(s)	457
BspTNI	GGTCTC	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	5 cut(s)	6, 50, 279, 287, 472
BssNI	GRCGYC	1 cut(s)	458
Bst2UI	CCWGG	3 cut(s)	230, 328, 367
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	395, 453
BstDEI	CTNAG	3 cut(s)	37, 54, 177
BstDSI	CCRYGG	1 cut(s)	453
BstFNI	CGCG	2 cut(s)	67, 455
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	3 cut(s)	67, 451, 460
BstKTI	GATC	5 cut(s)	9, 53, 282, 290, 475
BstMAI	GTCTC	2 cut(s)	325, 424
BstMBI	GATC	5 cut(s)	6, 50, 279, 287, 472
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 455, 457
BstNI	CCWGG	3 cut(s)	230, 328, 367
BstSCI	CCNGG	3 cut(s)	228, 326, 365
BstUI	CGCG	2 cut(s)	67, 455
BstV1I	GCAGC	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	2 cut(s)	50, 287
BstYI	RGATCY	2 cut(s)	50, 287
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	395, 453
CfoI	GCGC	3 cut(s)	67, 451, 460
Cfr42I	CCGCGG	1 cut(s)	456
CviAII	CATG	1 cut(s)	493
DdeI	CTNAG	3 cut(s)	37, 54, 177
DinI	GGCGCC	1 cut(s)	459
DpnI	GATC	5 cut(s)	8, 52, 281, 289, 474
DpnII	GATC	5 cut(s)	6, 50, 279, 287, 472
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	325
EcoRII	CCWGG	3 cut(s)	228, 326, 365
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
FaeI	CATG	1 cut(s)	496
FaiI	YATR	6 cut(s)	183, 264, 312, 340, 345, 494
FatI	CATG	1 cut(s)	492
FauI	CCCGC	2 cut(s)	434, 460
Fnu4HI	GCNGC	2 cut(s)	46, 456
Fsp4HI	GCNGC	2 cut(s)	46, 456
GlaI	GCGC	3 cut(s)	66, 450, 459
GluI	GCNGC	2 cut(s)	46, 456
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	2 cut(s)	84, 127
HhaI	GCGC	3 cut(s)	67, 451, 460
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	1 cut(s)	496
Hin6I	GCGC	3 cut(s)	65, 449, 458
HinP1I	GCGC	3 cut(s)	65, 449, 458
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	2 cut(s)	84, 127
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	94, 236, 284
Hpy188III	TCNNGA	1 cut(s)	476
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 455, 457
HpyF3I	CTNAG	3 cut(s)	37, 54, 177
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	1 cut(s)	496
HspAI	GCGC	3 cut(s)	65, 449, 458
KasI	GGCGCC	1 cut(s)	457
KspI	CCGCGG	1 cut(s)	456
Kzo9I	GATC	5 cut(s)	6, 50, 279, 287, 472
LmnI	GCTCC	2 cut(s)	22, 277
Lsp1109I	GCAGC	1 cut(s)	57
MalI	GATC	5 cut(s)	8, 52, 281, 289, 474
MboI	GATC	5 cut(s)	6, 50, 279, 287, 472
MboII	GAAGA	4 cut(s)	297, 314, 373, 414
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	2 cut(s)	50, 287
MluCI	AATT	3 cut(s)	143, 160, 400
Mly113I	GGCGCC	1 cut(s)	458
MmeI	TCCRAC	2 cut(s)	72, 214
MnlI	CCTC	7 cut(s)	30, 191, 197, 230, 302, 305, 428
MspA1I	CMGCKG	3 cut(s)	48, 58, 455
MspI	CCGG	2 cut(s)	84, 127
MspR9I	CCNGG	3 cut(s)	230, 328, 367
MunI	CAATTG	1 cut(s)	143
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	3 cut(s)	230, 328, 367
MvnI	CGCG	2 cut(s)	67, 455
MwoI	GCNNNNNNNGC	3 cut(s)	64, 455, 457
NarI	GGCGCC	1 cut(s)	458
NdeII	GATC	5 cut(s)	6, 50, 279, 287, 472
NlaIII	CATG	1 cut(s)	496
NlaIV	GGNNCC	2 cut(s)	18, 459
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	95
PflFI	GACNNNGTC	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	47, 457
PluTI	GGCGCC	1 cut(s)	461
Psp6I	CCWGG	3 cut(s)	228, 326, 365
PspGI	CCWGG	3 cut(s)	228, 326, 365
PspN4I	GGNNCC	2 cut(s)	18, 459
PsuI	RGATCY	2 cut(s)	50, 287
PsyI	GACNNNGTC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	58
SacII	CCGCGG	1 cut(s)	456
SatI	GCNGC	2 cut(s)	46, 456
Sau3AI	GATC	5 cut(s)	6, 50, 279, 287, 472
ScrFI	CCNGG	3 cut(s)	230, 328, 367
SfoI	GGCGCC	1 cut(s)	459
Sfr303I	CCGCGG	1 cut(s)	456
SgrBI	CCGCGG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	3 cut(s)	143, 160, 400
SsiI	CCGC	5 cut(s)	48, 111, 427, 453, 455
SspDI	GGCGCC	1 cut(s)	457
StyD4I	CCNGG	3 cut(s)	228, 326, 365
TaaI	ACNGT	1 cut(s)	158
TasI	AATT	3 cut(s)	143, 160, 400
TauI	GCSGC	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	45
TspDTI	ATGAA	3 cut(s)	21, 315, 321
Tth111I	GACNNNGTC	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.