Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0005892

Physical Location & Seq

Genomic Coordinates Reverse (-)

32519209 .. 32526260

Gene Structure 7052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1238800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTATCTGCTTTGCTCCTCTATCCACCTCATTCGCAGGCAGCGGATGCCAGCTGAAGGCGCGTGAGGTTTTGTGGTCCTCTGCCAAGGCCCAAACCCAAAGGAAACATTTTCACCTGCGAACCAATCGCAATTTCGCCGTTCGTGCCGAGTACAGTGACGACAGTAGAGGCGGCGGCGGCGGTGCTGATTTCGTCGCTGGTTTTGTGTTAGGAGGTGCTGTCTTTGGGACTTTGGCTTACGTTTTTGCTCCACAGATTAGAAGATCTCTACTTAATGAAGATGAATATGGATTCCGGAAAGCAAGAAGACCTATATATTACGATGAAGGTTTGGAGCGGAAGACTAGGATGACATTGAATGCAAAAATAAGCCAGCTCAATTCAGCCATTGACAATGTGTCTTCTCGTTTGAGAGGTGGGAACAATGATGCGCCCACGGTGCCAATAAAAAATGATCCTGAAGTAGAAGCTACCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.58

Weight (kDa)

9.59

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16660 AT5G16660
fragaria_vesca	FvH4_7g34210 FvH4_7g34210
malus_domestica	MD01G1238800.v1.1 MD07G1310700.v1.1
prunus_persica	Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1
pyrus_communis	pycom07g28300
rosa_chinensis	RchiOBHm_Chr1g0384571
rosa_laevigata	RLG00000026031
rosa_multiflora	Rmu_co8335447.1_g000001 Rmu_sc0006005.1_g000014
rosa_roxburghii	Rroxscaffold_4G00276580
rosa_rugosa	Rorug01G0449200 Rorug01G0449300
rosa_samantha	Rh1AG474100 Rh1BG432200 Rh1CG445400 Rh1DG464800
rosa_wichuraiana	Rw1G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	126
Acc36I	ACCTGC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	340
AccII	CGCG	1 cut(s)	64
AccIII	TCCGGA	1 cut(s)	297
AciI	CCGC	6 cut(s)	45, 174, 177, 180, 183, 340
AclWI	GGATC	1 cut(s)	452
AcuI	CTGAAG	2 cut(s)	77, 483
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	361
AhdI	GACNNNNNGTC	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	3 cut(s)	55, 379, 473
AluI	AGCT	3 cut(s)	55, 379, 473
AlwI	GGATC	1 cut(s)	452
Aor13HI	TCCGGA	1 cut(s)	297
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	64, 436
AspS9I	GGNCC	2 cut(s)	78, 91
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	442
BbsI	GAAGAC	3 cut(s)	316, 350, 396
BbvI	GCAGC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	348
BfuAI	ACCTGC	1 cut(s)	126
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	4 cut(s)	43, 175, 178, 181
BlsI	GCNGC	4 cut(s)	44, 176, 179, 182
Bme18I	GGWCC	1 cut(s)	78
BmeRI	GACNNNNNGTC	1 cut(s)	400
BmgT120I	GGNCC	2 cut(s)	78, 91
BmiI	GGNNCC	1 cut(s)	444
BmsI	GCATC	2 cut(s)	38, 421
BpiI	GAAGAC	3 cut(s)	316, 350, 396
BsaJI	CCNNGG	2 cut(s)	87, 438
BsaWI	WCCGGW	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
BseAI	TCCGGA	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	87, 438
BseGI	GGATG	2 cut(s)	53, 357
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	266, 457
BspACI	CCGC	6 cut(s)	45, 174, 177, 180, 183, 340
BspANI	GGCC	1 cut(s)	92
BspEI	TCCGGA	1 cut(s)	297
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	452
BspT107I	GGYRCC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	87, 438
BssMI	GATC	2 cut(s)	266, 457
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	158, 167, 442
BstAPI	GCANNNNNTGC	1 cut(s)	48
BstC8I	GCNNGC	3 cut(s)	40, 53, 377
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	53, 357
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	2 cut(s)	64, 436
BstKTI	GATC	2 cut(s)	269, 460
BstMBI	GATC	2 cut(s)	266, 457
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 61, 146, 180, 442
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	3 cut(s)	316, 350, 396
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	53, 357
BtsIMutI	CAGTG	1 cut(s)	163
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	40, 53, 377
CfoI	GCGC	2 cut(s)	64, 436
Cfr13I	GGNCC	2 cut(s)	78, 91
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	478
CviJI	RGCY	8 cut(s)	5, 55, 92, 239, 375, 379, 389, 473
CviKI_1	RGCY	8 cut(s)	5, 55, 92, 239, 375, 379, 389, 473
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	2 cut(s)	268, 459
DpnII	GATC	2 cut(s)	266, 457
DriI	GACNNNNNGTC	1 cut(s)	400
Eam1105I	GACNNNNNGTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	78
Eco57I	CTGAAG	2 cut(s)	77, 483
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	1 cut(s)	481
FaiI	YATR	4 cut(s)	291, 317, 319, 479
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	477
Fnu4HI	GCNGC	4 cut(s)	43, 175, 178, 181
FokI	GGATG	2 cut(s)	60, 364
Fsp4HI	GCNGC	4 cut(s)	43, 175, 178, 181
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	2 cut(s)	63, 435
GluI	GCNGC	4 cut(s)	43, 175, 178, 181
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	298
HhaI	GCGC	2 cut(s)	64, 436
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	2 cut(s)	62, 434
HinP1I	GCGC	2 cut(s)	62, 434
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	107
Hpy188III	TCNNGA	2 cut(s)	298, 461
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	52, 323
HpyCH4III	ACNGT	3 cut(s)	158, 167, 442
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	365
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 61, 146, 180, 442
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	2 cut(s)	62, 434
Kpn2I	TCCGGA	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	266, 457
LmnI	GCTCC	3 cut(s)	22, 256, 337
LpnPI	CCDG	7 cut(s)	24, 65, 131, 186, 311, 389, 474
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	2 cut(s)	38, 421
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	268, 459
MbiI	CCGCTC	1 cut(s)	340
MboI	GATC	2 cut(s)	266, 457
MboII	GAAGA	5 cut(s)	276, 293, 321, 355, 396
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	2 cut(s)	133, 382
MnlI	CCTC	7 cut(s)	30, 40, 61, 91, 164, 209, 410
MroI	TCCGGA	1 cut(s)	297
MseI	TTAA	1 cut(s)	276
MspA1I	CMGCKG	2 cut(s)	45, 55
MspI	CCGG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	367
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	5 cut(s)	48, 61, 146, 180, 442
NdeII	GATC	2 cut(s)	266, 457
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	1 cut(s)	444
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	158
PaqCI	CACCTGC	1 cut(s)	126
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	44, 176, 179, 182
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	2 cut(s)	78, 91
PsuI	RGATCY	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	4 cut(s)	43, 175, 178, 181
Sau3AI	GATC	2 cut(s)	266, 457
Sau96I	GGNCC	2 cut(s)	78, 91
SfaNI	GCATC	2 cut(s)	38, 421
SinI	GGWCC	1 cut(s)	78
Sse9I	AATT	2 cut(s)	133, 382
SsiI	CCGC	6 cut(s)	45, 174, 177, 180, 183, 340
SspMI	CTAG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	158, 167, 442
TaiI	ACGT	1 cut(s)	246
TasI	AATT	2 cut(s)	133, 382
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	3 cut(s)	177, 180, 183
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	294, 300, 342
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	78
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.