Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005892

Physical Location & Seq

Genomic Coordinates Reverse (-)

27642038 .. 27643903

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCGATCTGCTTTGCTCCTCTATCCACCTCATTCTCAGGCGGCGGATGCCAGCTGAAGGCGCGTGAGGTTTTGTGGTCCTCCGCCAACGGCAACGGCAGCGTCAAGGCCAAGGCCCAAACCCAAAGGAAACATATTCACCTGCGAACCGGTCGCAATTTCACTGTTCGTGCCGAGTACAGTGACGATAGTAGAGGTGGCGGCGGCGGTGCTGATTTCGTCGCTGGTTTTGTGTTAGGAGGTGCTGTCTTTGGGACTTTGGCTTACGTTTTTGCTCCACAGATTAGAAGATCTCTCCTTAATGAAGATGAATATGGATTCCGGAAGGCAAGAAGACCTATATATTACGATGAAGGTTTGGAGAAGACTAGGCAGACCTTGAATGCAAAAATAAGCCAGCTCAATTCAGCCATTGATAATGTGTCTTCTCGTTTGAGAGGTGGGAACAATGCACCTACGGTGCCAATAAAAAATGATCCTGAAGTGGAAGCTACCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

17.96

Weight (kDa)

9.69

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16660 AT5G16660
fragaria_vesca	FvH4_7g34210 FvH4_7g34210
malus_domestica	MD01G1238800.v1.1 MD07G1310700.v1.1
prunus_persica	Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1
pyrus_communis	pycom07g28300
rosa_chinensis	RchiOBHm_Chr1g0384571
rosa_laevigata	RLG00000026031
rosa_multiflora	Rmu_co8335447.1_g000001 Rmu_sc0006005.1_g000014
rosa_roxburghii	Rroxscaffold_4G00276580
rosa_rugosa	Rorug01G0449200 Rorug01G0449300
rosa_samantha	Rh1AG474100 Rh1BG432200 Rh1CG445400 Rh1DG464800
rosa_wichuraiana	Rw1G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	460
AccII	CGCG	1 cut(s)	64
AccIII	TCCGGA	1 cut(s)	321
AciI	CCGC	6 cut(s)	42, 45, 84, 201, 204, 207
AclWI	GGATC	1 cut(s)	470
AcuI	CTGAAG	2 cut(s)	77, 501
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	382
AluBI	AGCT	3 cut(s)	55, 400, 491
AluI	AGCT	3 cut(s)	55, 400, 491
AlwI	GGATC	1 cut(s)	470
Aor13HI	TCCGGA	1 cut(s)	321
AoxI	GGCC	2 cut(s)	108, 114
ApeKI	GCWGC	1 cut(s)	99
AsiGI	ACCGGT	1 cut(s)	149
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	78, 115
AsuHPI	GGTGA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	460
BbsI	GAAGAC	3 cut(s)	340, 371, 417
BbvI	GCAGC	1 cut(s)	111
BceAI	ACGGC	2 cut(s)	106, 112
BfaI	CTAG	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	150
BglII	AGATCT	1 cut(s)	290
BisI	GCNGC	4 cut(s)	43, 100, 202, 205
BlsI	GCNGC	4 cut(s)	44, 101, 203, 206
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	78, 115
BmiI	GGNNCC	1 cut(s)	462
BmsI	GCATC	1 cut(s)	38
BpiI	GAAGAC	3 cut(s)	340, 371, 417
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	2 cut(s)	149, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse118I	RCCGGY	1 cut(s)	149
BseAI	TCCGGA	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	64
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	110, 116
BshNI	GGYRCC	1 cut(s)	460
BshTI	ACCGGT	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	150, 322
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	110, 116
Bsp13I	TCCGGA	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	6, 290, 475
BspACI	CCGC	6 cut(s)	42, 45, 84, 201, 204, 207
BspANI	GGCC	2 cut(s)	110, 116
BspCNI	CTCAG	1 cut(s)	50
BspEI	TCCGGA	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	6, 290, 475
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	3 cut(s)	166, 182, 460
BstC8I	GCNNGC	2 cut(s)	53, 398
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	3 cut(s)	9, 293, 478
BstMBI	GATC	3 cut(s)	6, 290, 475
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 61, 99
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	3 cut(s)	340, 371, 417
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	110, 116
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	162, 187
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	53, 398
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	78, 115
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	178
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	1 cut(s)	496
CviJI	RGCY	8 cut(s)	55, 110, 116, 263, 396, 400, 410, 491
CviKI_1	RGCY	8 cut(s)	55, 110, 116, 263, 396, 400, 410, 491
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	37
DpnI	GATC	3 cut(s)	8, 292, 477
DpnII	GATC	3 cut(s)	6, 290, 475
EciI	GGCGGA	2 cut(s)	60, 73
Eco130I	CCWWGG	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	78
Eco57I	CTGAAG	2 cut(s)	77, 501
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	499
FaiI	YATR	5 cut(s)	135, 315, 341, 343, 497
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	495
Fnu4HI	GCNGC	4 cut(s)	43, 100, 202, 205
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	4 cut(s)	43, 100, 202, 205
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	4 cut(s)	43, 100, 202, 205
HaeIII	GGCC	2 cut(s)	110, 116
HapII	CCGG	2 cut(s)	150, 322
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	499
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	318
HpaII	CCGG	2 cut(s)	150, 322
HphI	GGTGA	1 cut(s)	131
Hpy188III	TCNNGA	2 cut(s)	322, 479
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	52, 319, 347
HpyCH4III	ACNGT	3 cut(s)	166, 182, 460
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	386, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 61, 99
HpyF3I	CTNAG	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	499
HspAI	GCGC	1 cut(s)	62
Kpn2I	TCCGGA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	6, 290, 475
LmnI	GCTCC	2 cut(s)	22, 280
LpnPI	CCDG	8 cut(s)	24, 65, 155, 163, 210, 335, 410, 492
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	3 cut(s)	8, 292, 477
MboI	GATC	3 cut(s)	6, 290, 475
MboII	GAAGA	5 cut(s)	300, 317, 345, 376, 417
MflI	RGATCY	1 cut(s)	290
MluCI	AATT	2 cut(s)	157, 403
MnlI	CCTC	7 cut(s)	30, 40, 61, 91, 188, 233, 431
MroI	TCCGGA	1 cut(s)	321
MseI	TTAA	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	2 cut(s)	150, 322
Mva1269I	GAATGC	1 cut(s)	388
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	48, 61, 99
NdeII	GATC	3 cut(s)	6, 290, 475
NlaIII	CATG	1 cut(s)	499
NlaIV	GGNNCC	1 cut(s)	462
NmeAIII	GCCGAG	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	182
PaqCI	CACCTGC	1 cut(s)	150
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	318
PinAI	ACCGGT	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	44, 101, 203, 206
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	2 cut(s)	78, 115
PsuI	RGATCY	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	43, 100, 202, 205
Sau3AI	GATC	3 cut(s)	6, 290, 475
Sau96I	GGNCC	2 cut(s)	78, 115
SfaNI	GCATC	1 cut(s)	38
SinI	GGWCC	1 cut(s)	78
Sse9I	AATT	2 cut(s)	157, 403
SsiI	CCGC	6 cut(s)	42, 45, 84, 201, 204, 207
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	3 cut(s)	166, 182, 460
TaiI	ACGT	1 cut(s)	270
TasI	AATT	2 cut(s)	157, 403
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	3 cut(s)	45, 204, 207
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	2 cut(s)	169, 187
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	99
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	3 cut(s)	318, 324, 366
TspRI	CASTG	2 cut(s)	169, 187
VpaK11BI	GGWCC	1 cut(s)	78
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.