Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005892

Physical Location & Seq

Genomic Coordinates Reverse (-)

30213549 .. 30216413

Gene Structure 2865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G328900.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGATCTGCTTTGCTCCTCTATCCGCCTCATTTTCAGGAGGCGGATGTCAGCTGAAGGCGCGTGAGATGTGGTGGTCCAGCAGCAGTCGGGCAGAATCAGCAAAGCTCACTACCCAAAGCCCAAGGAAAAATATTCAACTGCGAACCAACCGCAATTTCGCTATTCGTGCTGAGTACAGCAGTGATGATAGTAGGGGTGGAGGTGCTGATTTTCTTGCTGGATTTGTCTTAGGTGGTGCTGTCTTTGGGACCTTAGCTTATGTTTTTGCTCCACAGATTAGAAGATCTCTACTTAATGAAGATGAATATGGATTCCGGAAGGCCAGAAGACCAATATATTATGATGAAGGTTTGGAGAAGACCAGGCAGACCTTGAATGCAAAAATAAGCCAGCTCAATTCGGCCATTGACAATGTCTCTTCACGTTTGAGAGGTGGGAACAATGTGCCGACGGTGCCAATTAAAAGTGATCCTGAAGTAGAAGCAACCATATTGGAGGAGAGCAGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.73

Weight (kDa)

9.23

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16660 AT5G16660
fragaria_vesca	FvH4_7g34210 FvH4_7g34210
malus_domestica	MD01G1238800.v1.1 MD07G1310700.v1.1
prunus_persica	Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1
pyrus_communis	pycom07g28300
rosa_chinensis	RchiOBHm_Chr1g0384571
rosa_laevigata	RLG00000026031
rosa_multiflora	Rmu_co8335447.1_g000001 Rmu_sc0006005.1_g000014
rosa_roxburghii	Rroxscaffold_4G00276580
rosa_rugosa	Rorug01G0449200 Rorug01G0449300
rosa_samantha	Rh1AG474100 Rh1BG432200 Rh1CG445400 Rh1DG464800
rosa_wichuraiana	Rw1G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AccII	CGCG	1 cut(s)	64
AccIII	TCCGGA	1 cut(s)	318
AciI	CCGC	3 cut(s)	27, 45, 154
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	405
AcuI	CTGAAG	2 cut(s)	77, 498
AfaI	GTAC	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	140, 379
AjnI	CCWGG	1 cut(s)	365
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	55, 109, 260, 397
AluI	AGCT	4 cut(s)	55, 109, 260, 397
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	467
Aor13HI	TCCGGA	1 cut(s)	318
AoxI	GGCC	2 cut(s)	324, 405
ApeKI	GCWGC	2 cut(s)	84, 507
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	2 cut(s)	78, 252
AvaII	GGWCC	2 cut(s)	78, 252
BanI	GGYRCC	1 cut(s)	457
BbsI	GAAGAC	2 cut(s)	337, 368
BbvI	GCAGC	1 cut(s)	96
BciT130I	CCWGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	2 cut(s)	85, 508
BlsI	GCNGC	2 cut(s)	86, 509
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	2 cut(s)	78, 252
BmgT120I	GGNCC	2 cut(s)	78, 252
BmiI	GGNNCC	2 cut(s)	253, 459
BmrFI	CCNGG	1 cut(s)	367
BpiI	GAAGAC	2 cut(s)	337, 368
Bpu10I	CCTNAGC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	318
BseAI	TCCGGA	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	165
BseRI	GAGGAG	2 cut(s)	9, 515
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	326, 407
BshNI	GGYRCC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	326, 407
Bsp13I	TCCGGA	1 cut(s)	318
Bsp143I	GATC	3 cut(s)	6, 287, 472
BspACI	CCGC	3 cut(s)	27, 45, 154
BspANI	GGCC	2 cut(s)	326, 407
BspCNI	CTCAG	1 cut(s)	166
BspEI	TCCGGA	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	253, 459
BspPI	GGATC	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	3 cut(s)	6, 287, 472
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	3 cut(s)	174, 232, 256
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	3 cut(s)	9, 290, 475
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	3 cut(s)	6, 287, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 101, 170, 457
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	96
BstV2I	GAAGAC	2 cut(s)	337, 368
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	326, 407
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	78, 252
Csp6I	GTAC	1 cut(s)	178
CviJI	RGCY	8 cut(s)	55, 109, 123, 260, 326, 393, 397, 407
CviKI_1	RGCY	8 cut(s)	55, 109, 123, 260, 326, 393, 397, 407
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	3 cut(s)	174, 232, 256
DpnI	GATC	3 cut(s)	8, 289, 474
DpnII	GATC	3 cut(s)	6, 287, 472
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
EciI	GGCGGA	2 cut(s)	16, 60
Eco130I	CCWWGG	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	78, 252
Eco57I	CTGAAG	2 cut(s)	77, 498
EcoO109I	RGGNCCY	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaiI	YATR	5 cut(s)	264, 312, 340, 345, 494
FaqI	GGGAC	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	85, 508
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	85, 508
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	2 cut(s)	85, 508
HaeIII	GGCC	2 cut(s)	326, 407
HapII	CCGG	1 cut(s)	319
HhaI	GCGC	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	2 cut(s)	98, 315
HpaII	CCGG	1 cut(s)	319
Hpy188III	TCNNGA	3 cut(s)	39, 319, 476
Hpy99I	CGWCG	1 cut(s)	457
HpyAV	CCTTC	3 cut(s)	52, 316, 344
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	427
HpyCH4V	TGCA	1 cut(s)	383
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 101, 170, 457
HpyF3I	CTNAG	3 cut(s)	174, 232, 256
HpySE526I	ACGT	1 cut(s)	427
HspAI	GCGC	1 cut(s)	62
Kpn2I	TCCGGA	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	6, 287, 472
LmnI	GCTCC	2 cut(s)	22, 277
LpnPI	CCDG	9 cut(s)	24, 94, 207, 332, 340, 352, 379, 407, 489
Lsp1109I	GCAGC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	427
MalI	GATC	3 cut(s)	8, 289, 474
MboI	GATC	3 cut(s)	6, 287, 472
MboII	GAAGA	5 cut(s)	297, 314, 342, 373, 414
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	3 cut(s)	157, 400, 462
MnlI	CCTC	6 cut(s)	30, 35, 40, 197, 428, 493
MroI	TCCGGA	1 cut(s)	318
MseI	TTAA	2 cut(s)	297, 465
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	367
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	4 cut(s)	61, 101, 170, 457
NdeII	GATC	3 cut(s)	6, 287, 472
NlaIV	GGNNCC	2 cut(s)	253, 459
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	98, 315
PflFI	GACNNNGTC	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	86, 509
PpuMI	RGGWCCY	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	253, 459
PspPI	GGNCC	2 cut(s)	78, 252
PspPPI	RGGWCCY	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	287
PsyI	GACNNNGTC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	297, 465
SatI	GCNGC	2 cut(s)	85, 508
Sau3AI	GATC	3 cut(s)	6, 287, 472
Sau96I	GGNCC	2 cut(s)	78, 252
ScrFI	CCNGG	1 cut(s)	367
SinI	GGWCC	2 cut(s)	78, 252
Sse9I	AATT	3 cut(s)	157, 400, 462
SsiI	CCGC	3 cut(s)	27, 45, 154
SspI	AATATT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	430
TasI	AATT	3 cut(s)	157, 400, 462
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	2 cut(s)	98, 315
Tru1I	TTAA	2 cut(s)	297, 465
Tru9I	TTAA	2 cut(s)	297, 465
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	2 cut(s)	84, 507
TspDTI	ATGAA	3 cut(s)	315, 321, 363
TspRI	CASTG	1 cut(s)	190
Tth111I	GACNNNGTC	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	78, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.