Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005892

Physical Location & Seq

Genomic Coordinates Reverse (-)

69672696 .. 69674595

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG445400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGATCTGCTTGGCTCCTCTAACCACTTCATTCTCAGGCAGCGGATCTCAGCTGAAAGCGCGTGAGATTTGGTTGTCCGGCAAGTCGGAATCAGTAAAACTCACCGCACAGAGCCAGAGCCGGAGAAACTCGGTTCAATTGCGAAACAACCGTAATTTCTGTGTTCGTGCTGAGTATAGTGATGGTAATAGAGGTGGAGGTGCTGATTTTCTTGCTGGTTTCCTGGTCGGAGGTGCTGTGTTTGGAACTTTAGCTTATGTTTTTGCTCCACAGATCAGAAGATCTCTCCTCAATGAAGATGAATATGGATTTCGTAAGGCCAGGAGACCAATATATTATGACGAAGGTTTAGAGAAGACCAGGCAGACCTTGAATGCAAAAATAAGCCAGCTCAATTCAGCCATTGACAATGTCTCTTCCCGCTTGAGAGGTGGGAACAATGCGCCCGCGGCGCCAGTCCCAAGTGATCCCGAAGTAGAAGCTACCATTAGTTGGTCCTGGGATAAAGTCTCCTGGTTCAGATTTCTCCTGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.74

Weight (kDa)

9.74

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16660 AT5G16660
fragaria_vesca	FvH4_7g34210 FvH4_7g34210
malus_domestica	MD01G1238800.v1.1 MD07G1310700.v1.1
prunus_persica	Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1 Prupe.2G328900_v2.0.a1
pyrus_communis	pycom07g28300
rosa_chinensis	RchiOBHm_Chr1g0384571
rosa_laevigata	RLG00000026031
rosa_multiflora	Rmu_co8335447.1_g000001 Rmu_sc0006005.1_g000014
rosa_roxburghii	Rroxscaffold_4G00276580
rosa_rugosa	Rorug01G0449200 Rorug01G0449300
rosa_samantha	Rh1AG474100 Rh1BG432200 Rh1CG445400 Rh1DG464800
rosa_wichuraiana	Rw1G039840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	495
AccII	CGCG	2 cut(s)	64, 452
AciI	CCGC	5 cut(s)	45, 108, 424, 450, 452
AclWI	GGATC	2 cut(s)	55, 464
AcyI	GRCGYC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	2 cut(s)	140, 376
AjnI	CCWGG	5 cut(s)	225, 323, 362, 500, 515
AluBI	AGCT	5 cut(s)	55, 257, 394, 485, 537
AluI	AGCT	5 cut(s)	55, 257, 394, 485, 537
Alw26I	GTCTC	3 cut(s)	322, 421, 517
AlwI	GGATC	2 cut(s)	55, 464
AoxI	GGCC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	42
AspLEI	GCGC	3 cut(s)	64, 448, 457
AspS9I	GGNCC	1 cut(s)	498
AsuHPI	GGTGA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	5 cut(s)	227, 325, 364, 502, 517
BcoDI	GTCTC	3 cut(s)	322, 421, 517
BfoI	RGCGCY	1 cut(s)	458
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	2 cut(s)	43, 453
BlsI	GCNGC	2 cut(s)	44, 454
Bme1390I	CCNGG	5 cut(s)	227, 325, 364, 502, 517
Bme18I	GGWCC	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	498
BmiI	GGNNCC	2 cut(s)	18, 456
BmrFI	CCNGG	5 cut(s)	227, 325, 364, 502, 517
BpiI	GAAGAC	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	450, 501
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	1 cut(s)	458
BseBI	CCWGG	5 cut(s)	227, 325, 364, 502, 517
BseDI	CCNNGG	2 cut(s)	450, 501
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMII	CTCAG	4 cut(s)	51, 65, 165, 524
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	2 cut(s)	9, 281
BseXI	GCAGC	1 cut(s)	54
Bsh1236I	CGCG	2 cut(s)	64, 452
BshFI	GGCC	1 cut(s)	323
BshNI	GGYRCC	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	81, 124
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	3 cut(s)	322, 421, 517
BsmFI	GGGAC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	323
Bso31I	GGTCTC	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	6, 47, 276, 284, 469
BspACI	CCGC	5 cut(s)	45, 108, 424, 450, 452
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	4 cut(s)	50, 64, 166, 525
BspFNI	CGCG	2 cut(s)	64, 452
BspLI	GGNNCC	2 cut(s)	18, 456
BspPI	GGATC	2 cut(s)	55, 464
BspT107I	GGYRCC	1 cut(s)	454
BspTNI	GGTCTC	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	450, 501
BssMI	GATC	5 cut(s)	6, 47, 276, 284, 469
BssNI	GRCGYC	1 cut(s)	455
Bst2UI	CCWGG	5 cut(s)	227, 325, 364, 502, 517
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	424
BstACI	GRCGYC	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	392, 450
BstDEI	CTNAG	4 cut(s)	37, 51, 174, 533
BstDSI	CCRYGG	1 cut(s)	450
BstFNI	CGCG	2 cut(s)	64, 452
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	3 cut(s)	64, 448, 457
BstKTI	GATC	5 cut(s)	9, 50, 279, 287, 472
BstMAI	GTCTC	3 cut(s)	322, 421, 517
BstMBI	GATC	5 cut(s)	6, 47, 276, 284, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 452, 454
BstNI	CCWGG	5 cut(s)	227, 325, 364, 502, 517
BstSCI	CCNGG	5 cut(s)	225, 323, 362, 500, 515
BstUI	CGCG	2 cut(s)	64, 452
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	47, 284
BstYI	RGATCY	2 cut(s)	47, 284
BsuRI	GGCC	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	392, 450
CfoI	GCGC	3 cut(s)	64, 448, 457
Cfr13I	GGNCC	1 cut(s)	498
Cfr42I	CCGCGG	1 cut(s)	453
DdeI	CTNAG	4 cut(s)	37, 51, 174, 533
DinI	GGCGCC	1 cut(s)	456
DpnI	GATC	5 cut(s)	8, 49, 278, 286, 471
DpnII	GATC	5 cut(s)	6, 47, 276, 284, 469
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	498
EcoRII	CCWGG	5 cut(s)	225, 323, 362, 500, 515
EgeI	GGCGCC	1 cut(s)	456
EheI	GGCGCC	1 cut(s)	456
FaiI	YATR	5 cut(s)	180, 261, 309, 337, 342
FaqI	GGGAC	1 cut(s)	446
FauI	CCCGC	2 cut(s)	431, 457
Fnu4HI	GCNGC	2 cut(s)	43, 453
Fsp4HI	GCNGC	2 cut(s)	43, 453
GlaI	GCGC	3 cut(s)	63, 447, 456
GluI	GCNGC	2 cut(s)	43, 453
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	323
HapII	CCGG	2 cut(s)	81, 124
HhaI	GCGC	3 cut(s)	64, 448, 457
Hin1I	GRCGYC	1 cut(s)	455
Hin6I	GCGC	3 cut(s)	62, 446, 455
HinP1I	GCGC	3 cut(s)	62, 446, 455
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	2 cut(s)	81, 124
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	91, 233, 281, 524
Hpy188III	TCNNGA	2 cut(s)	473, 532
HpyAV	CCTTC	1 cut(s)	341
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 452, 454
HpyF3I	CTNAG	4 cut(s)	37, 51, 174, 533
Hsp92I	GRCGYC	1 cut(s)	455
HspAI	GCGC	3 cut(s)	62, 446, 455
KasI	GGCGCC	1 cut(s)	454
KspI	CCGCGG	1 cut(s)	453
Kzo9I	GATC	5 cut(s)	6, 47, 276, 284, 469
LmnI	GCTCC	2 cut(s)	22, 274
Lsp1109I	GCAGC	1 cut(s)	54
MalI	GATC	5 cut(s)	8, 49, 278, 286, 471
MboI	GATC	5 cut(s)	6, 47, 276, 284, 469
MboII	GAAGA	4 cut(s)	294, 311, 370, 411
MfeI	CAATTG	1 cut(s)	140
MflI	RGATCY	2 cut(s)	47, 284
MluCI	AATT	3 cut(s)	140, 157, 397
Mly113I	GGCGCC	1 cut(s)	455
MmeI	TCCRAC	2 cut(s)	69, 211
MnlI	CCTC	6 cut(s)	30, 188, 194, 227, 302, 425
MspA1I	CMGCKG	3 cut(s)	45, 55, 452
MspI	CCGG	2 cut(s)	81, 124
MspR9I	CCNGG	5 cut(s)	227, 325, 364, 502, 517
MunI	CAATTG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	5 cut(s)	227, 325, 364, 502, 517
MvnI	CGCG	2 cut(s)	64, 452
MwoI	GCNNNNNNNGC	3 cut(s)	61, 452, 454
NarI	GGCGCC	1 cut(s)	455
NdeII	GATC	5 cut(s)	6, 47, 276, 284, 469
NlaIV	GGNNCC	2 cut(s)	18, 456
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	413
PflMI	CCANNNNNTGG	1 cut(s)	495
PkrI	GCNGC	2 cut(s)	44, 454
PluTI	GGCGCC	1 cut(s)	458
Psp6I	CCWGG	5 cut(s)	225, 323, 362, 500, 515
PspGI	CCWGG	5 cut(s)	225, 323, 362, 500, 515
PspN4I	GGNNCC	2 cut(s)	18, 456
PspPI	GGNCC	1 cut(s)	498
PsuI	RGATCY	2 cut(s)	47, 284
PsyI	GACNNNGTC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	55
SacII	CCGCGG	1 cut(s)	453
SatI	GCNGC	2 cut(s)	43, 453
Sau3AI	GATC	5 cut(s)	6, 47, 276, 284, 469
Sau96I	GGNCC	1 cut(s)	498
ScrFI	CCNGG	5 cut(s)	227, 325, 364, 502, 517
SfoI	GGCGCC	1 cut(s)	456
Sfr303I	CCGCGG	1 cut(s)	453
SgrBI	CCGCGG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	3 cut(s)	140, 157, 397
SsiI	CCGC	5 cut(s)	45, 108, 424, 450, 452
SspDI	GGCGCC	1 cut(s)	454
StyD4I	CCNGG	5 cut(s)	225, 323, 362, 500, 515
TaaI	ACNGT	1 cut(s)	155
TasI	AATT	3 cut(s)	140, 157, 397
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	3 cut(s)	21, 312, 318
Tth111I	GACNNNGTC	1 cut(s)	413
Van91I	CCANNNNNTGG	1 cut(s)	495
VpaK11BI	GGWCC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.